data_5T2S
#
_model_server_result.job_id            p9vnMZkm3lKbUNno8BZjow 
_model_server_result.datetime_utc      '2025-02-28 18:07:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    5T2S 
#
_exptl.entry_id    5T2S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.01 
_cell.angle_gamma         90 
_cell.entry_id            5T2S 
_cell.length_a            64.52 
_cell.length_b            87.26 
_cell.length_c            66.15 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T2S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,P,Q 1 1 
C,D,G,H,I,J,K,L,M,N,O,R,S 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C SER 4 B SER 4 1_555 B N TPO 5 B TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C TPO 5 B TPO 5 1_555 B N ASP 6 B ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 D C SER 4 D SER 4 1_555 D N TPO 5 D TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 D C TPO 5 D TPO 5 1_555 D N ASP 6 D ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5T2S 
_atom_sites.fract_transf_matrix[1][1]    0.015499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001087 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015154 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 401 669 GOL GOL . 
F 3 GOL A 1 402 678 GOL GOL . 
G 3 GOL C 1 401 663 GOL GOL . 
H 3 GOL C 1 402 666 GOL GOL . 
I 3 GOL C 1 403 668 GOL GOL . 
J 3 GOL C 1 404 670 GOL GOL . 
K 3 GOL C 1 405 671 GOL GOL . 
L 3 GOL C 1 406 673 GOL GOL . 
M 3 GOL C 1 407 674 GOL GOL . 
N 3 GOL C 1 408 677 GOL GOL . 
O 3 GOL D 1 101 672 GOL GOL . 
P 4 HOH A 1 501 9 HOH HOH . 
P 4 HOH A 2 502 63 HOH HOH . 
P 4 HOH A 3 503 88 HOH HOH . 
P 4 HOH A 4 504 181 HOH HOH . 
P 4 HOH A 5 505 141 HOH HOH . 
P 4 HOH A 6 506 62 HOH HOH . 
P 4 HOH A 7 507 142 HOH HOH . 
P 4 HOH A 8 508 12 HOH HOH . 
P 4 HOH A 9 509 85 HOH HOH . 
P 4 HOH A 10 510 131 HOH HOH . 
P 4 HOH A 11 511 8 HOH HOH . 
P 4 HOH A 12 512 89 HOH HOH . 
P 4 HOH A 13 513 7 HOH HOH . 
P 4 HOH A 14 514 94 HOH HOH . 
P 4 HOH A 15 515 158 HOH HOH . 
P 4 HOH A 16 516 29 HOH HOH . 
P 4 HOH A 17 517 15 HOH HOH . 
P 4 HOH A 18 518 22 HOH HOH . 
P 4 HOH A 19 519 35 HOH HOH . 
P 4 HOH A 20 520 45 HOH HOH . 
P 4 HOH A 21 521 20 HOH HOH . 
P 4 HOH A 22 522 100 HOH HOH . 
P 4 HOH A 23 523 77 HOH HOH . 
P 4 HOH A 24 524 40 HOH HOH . 
P 4 HOH A 25 525 49 HOH HOH . 
P 4 HOH A 26 526 41 HOH HOH . 
P 4 HOH A 27 527 73 HOH HOH . 
P 4 HOH A 28 528 150 HOH HOH . 
P 4 HOH A 29 529 171 HOH HOH . 
P 4 HOH A 30 530 115 HOH HOH . 
P 4 HOH A 31 531 17 HOH HOH . 
P 4 HOH A 32 532 122 HOH HOH . 
P 4 HOH A 33 533 21 HOH HOH . 
P 4 HOH A 34 534 43 HOH HOH . 
P 4 HOH A 35 535 97 HOH HOH . 
P 4 HOH A 36 536 83 HOH HOH . 
P 4 HOH A 37 537 108 HOH HOH . 
P 4 HOH A 38 538 24 HOH HOH . 
P 4 HOH A 39 539 16 HOH HOH . 
P 4 HOH A 40 540 159 HOH HOH . 
P 4 HOH A 41 541 106 HOH HOH . 
P 4 HOH A 42 542 136 HOH HOH . 
P 4 HOH A 43 543 183 HOH HOH . 
P 4 HOH A 44 544 110 HOH HOH . 
P 4 HOH A 45 545 68 HOH HOH . 
P 4 HOH A 46 546 124 HOH HOH . 
P 4 HOH A 47 547 103 HOH HOH . 
P 4 HOH A 48 548 30 HOH HOH . 
P 4 HOH A 49 549 51 HOH HOH . 
P 4 HOH A 50 550 164 HOH HOH . 
P 4 HOH A 51 551 33 HOH HOH . 
P 4 HOH A 52 552 65 HOH HOH . 
P 4 HOH A 53 553 154 HOH HOH . 
P 4 HOH A 54 554 163 HOH HOH . 
P 4 HOH A 55 555 119 HOH HOH . 
P 4 HOH A 56 556 135 HOH HOH . 
P 4 HOH A 57 557 81 HOH HOH . 
P 4 HOH A 58 558 71 HOH HOH . 
P 4 HOH A 59 559 134 HOH HOH . 
P 4 HOH A 60 560 87 HOH HOH . 
P 4 HOH A 61 561 170 HOH HOH . 
P 4 HOH A 62 562 177 HOH HOH . 
P 4 HOH A 63 563 42 HOH HOH . 
P 4 HOH A 64 564 186 HOH HOH . 
P 4 HOH A 65 565 69 HOH HOH . 
P 4 HOH A 66 566 167 HOH HOH . 
P 4 HOH A 67 567 112 HOH HOH . 
P 4 HOH A 68 568 126 HOH HOH . 
P 4 HOH A 69 569 182 HOH HOH . 
P 4 HOH A 70 570 168 HOH HOH . 
Q 4 HOH B 1 101 157 HOH HOH . 
R 4 HOH C 1 501 104 HOH HOH . 
R 4 HOH C 2 502 56 HOH HOH . 
R 4 HOH C 3 503 38 HOH HOH . 
R 4 HOH C 4 504 11 HOH HOH . 
R 4 HOH C 5 505 19 HOH HOH . 
R 4 HOH C 6 506 179 HOH HOH . 
R 4 HOH C 7 507 5 HOH HOH . 
R 4 HOH C 8 508 1 HOH HOH . 
R 4 HOH C 9 509 107 HOH HOH . 
R 4 HOH C 10 510 102 HOH HOH . 
R 4 HOH C 11 511 36 HOH HOH . 
R 4 HOH C 12 512 64 HOH HOH . 
R 4 HOH C 13 513 117 HOH HOH . 
R 4 HOH C 14 514 93 HOH HOH . 
R 4 HOH C 15 515 61 HOH HOH . 
R 4 HOH C 16 516 92 HOH HOH . 
R 4 HOH C 17 517 59 HOH HOH . 
R 4 HOH C 18 518 72 HOH HOH . 
R 4 HOH C 19 519 2 HOH HOH . 
R 4 HOH C 20 520 10 HOH HOH . 
R 4 HOH C 21 521 174 HOH HOH . 
R 4 HOH C 22 522 31 HOH HOH . 
R 4 HOH C 23 523 3 HOH HOH . 
R 4 HOH C 24 524 34 HOH HOH . 
R 4 HOH C 25 525 32 HOH HOH . 
R 4 HOH C 26 526 133 HOH HOH . 
R 4 HOH C 27 527 130 HOH HOH . 
R 4 HOH C 28 528 162 HOH HOH . 
R 4 HOH C 29 529 23 HOH HOH . 
R 4 HOH C 30 530 113 HOH HOH . 
R 4 HOH C 31 531 4 HOH HOH . 
R 4 HOH C 32 532 13 HOH HOH . 
R 4 HOH C 33 533 166 HOH HOH . 
R 4 HOH C 34 534 79 HOH HOH . 
R 4 HOH C 35 535 28 HOH HOH . 
R 4 HOH C 36 536 52 HOH HOH . 
R 4 HOH C 37 537 25 HOH HOH . 
R 4 HOH C 38 538 27 HOH HOH . 
R 4 HOH C 39 539 46 HOH HOH . 
R 4 HOH C 40 540 48 HOH HOH . 
R 4 HOH C 41 541 66 HOH HOH . 
R 4 HOH C 42 542 99 HOH HOH . 
R 4 HOH C 43 543 58 HOH HOH . 
R 4 HOH C 44 544 123 HOH HOH . 
R 4 HOH C 45 545 161 HOH HOH . 
R 4 HOH C 46 546 54 HOH HOH . 
R 4 HOH C 47 547 96 HOH HOH . 
R 4 HOH C 48 548 76 HOH HOH . 
R 4 HOH C 49 549 70 HOH HOH . 
R 4 HOH C 50 550 18 HOH HOH . 
R 4 HOH C 51 551 165 HOH HOH . 
R 4 HOH C 52 552 82 HOH HOH . 
R 4 HOH C 53 553 74 HOH HOH . 
R 4 HOH C 54 554 14 HOH HOH . 
R 4 HOH C 55 555 145 HOH HOH . 
R 4 HOH C 56 556 47 HOH HOH . 
R 4 HOH C 57 557 121 HOH HOH . 
R 4 HOH C 58 558 26 HOH HOH . 
R 4 HOH C 59 559 78 HOH HOH . 
R 4 HOH C 60 560 139 HOH HOH . 
R 4 HOH C 61 561 149 HOH HOH . 
R 4 HOH C 62 562 98 HOH HOH . 
R 4 HOH C 63 563 128 HOH HOH . 
R 4 HOH C 64 564 44 HOH HOH . 
R 4 HOH C 65 565 140 HOH HOH . 
R 4 HOH C 66 566 151 HOH HOH . 
R 4 HOH C 67 567 109 HOH HOH . 
R 4 HOH C 68 568 55 HOH HOH . 
R 4 HOH C 69 569 175 HOH HOH . 
R 4 HOH C 70 570 105 HOH HOH . 
R 4 HOH C 71 571 118 HOH HOH . 
R 4 HOH C 72 572 127 HOH HOH . 
R 4 HOH C 73 573 114 HOH HOH . 
R 4 HOH C 74 574 173 HOH HOH . 
R 4 HOH C 75 575 80 HOH HOH . 
R 4 HOH C 76 576 90 HOH HOH . 
R 4 HOH C 77 577 143 HOH HOH . 
R 4 HOH C 78 578 60 HOH HOH . 
R 4 HOH C 79 579 39 HOH HOH . 
R 4 HOH C 80 580 111 HOH HOH . 
R 4 HOH C 81 581 132 HOH HOH . 
R 4 HOH C 82 582 138 HOH HOH . 
R 4 HOH C 83 583 53 HOH HOH . 
R 4 HOH C 84 584 146 HOH HOH . 
R 4 HOH C 85 585 50 HOH HOH . 
R 4 HOH C 86 586 120 HOH HOH . 
R 4 HOH C 87 587 169 HOH HOH . 
R 4 HOH C 88 588 147 HOH HOH . 
R 4 HOH C 89 589 101 HOH HOH . 
R 4 HOH C 90 590 185 HOH HOH . 
R 4 HOH C 91 591 176 HOH HOH . 
R 4 HOH C 92 592 116 HOH HOH . 
R 4 HOH C 93 593 180 HOH HOH . 
R 4 HOH C 94 594 152 HOH HOH . 
R 4 HOH C 95 595 178 HOH HOH . 
R 4 HOH C 96 596 184 HOH HOH . 
R 4 HOH C 97 597 75 HOH HOH . 
R 4 HOH C 98 598 91 HOH HOH . 
R 4 HOH C 99 599 156 HOH HOH . 
S 4 HOH D 1 201 57 HOH HOH . 
S 4 HOH D 2 202 67 HOH HOH . 
S 4 HOH D 3 203 86 HOH HOH . 
S 4 HOH D 4 204 160 HOH HOH . 
S 4 HOH D 5 205 137 HOH HOH . 
S 4 HOH D 6 206 37 HOH HOH . 
S 4 HOH D 7 207 172 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 21.289 36.309 13.923 1 51.82 ? C1 GOL 402 C 1 
HETATM 2 O O1 GOL . . . H 3 22.203 35.405 14.503 1 54.61 ? O1 GOL 402 C 1 
HETATM 3 C C2 GOL . . . H 3 21.353 37.639 14.662 1 48.53 ? C2 GOL 402 C 1 
HETATM 4 O O2 GOL . . . H 3 22.703 38.006 14.813 1 50.05 ? O2 GOL 402 C 1 
HETATM 5 C C3 GOL . . . H 3 20.658 38.729 13.855 1 51.53 ? C3 GOL 402 C 1 
HETATM 6 O O3 GOL . . . H 3 19.608 39.307 14.601 1 62 ? O3 GOL 402 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#