data_5T36 # _model_server_result.job_id kzFDzFpWZY9wI9oMEnWu8g _model_server_result.datetime_utc '2024-11-24 19:13:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5T36 # _exptl.entry_id 5T36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.856 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-chloro-2-[({(1S,2S)-2-[(2,2-dimethylpropanoyl)amino]cyclopentyl}methyl)amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T36 _cell.length_a 77.009 _cell.length_b 77.009 _cell.length_c 123.24 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 Cl N2 O3' _chem_comp.formula_weight 352.856 _chem_comp.id 755 _chem_comp.mon_nstd_flag . _chem_comp.name '4-chloro-2-[({(1S,2S)-2-[(2,2-dimethylpropanoyl)amino]cyclopentyl}methyl)amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C13 755 sing 1 n n C8 C5 755 sing 2 n n C7 C5 755 sing 3 n n C6 C5 755 sing 4 n n C13 C14 755 doub 5 n y C13 C12 755 sing 6 n y C5 C4 755 sing 7 n n C14 C15 755 sing 8 n y C12 C11 755 doub 9 n y C4 O 755 doub 10 n n C4 N 755 sing 11 n n C15 C16 755 doub 12 n y C11 C16 755 sing 13 n y C11 N1 755 sing 14 n n N C3 755 sing 15 n n C16 C17 755 sing 16 n n C10 N1 755 sing 17 n n C10 C9 755 sing 18 n n C3 C9 755 sing 19 n n C3 C2 755 sing 20 n n C17 O2 755 doub 21 n n C17 O1 755 sing 22 n n C9 C 755 sing 23 n n C2 C1 755 sing 24 n n C C1 755 sing 25 n n O1 H1 755 sing 26 n n C7 H2 755 sing 27 n n C7 H3 755 sing 28 n n C7 H4 755 sing 29 n n C6 H5 755 sing 30 n n C6 H6 755 sing 31 n n C6 H7 755 sing 32 n n C1 H8 755 sing 33 n n C1 H9 755 sing 34 n n N1 H10 755 sing 35 n n C3 H11 755 sing 36 n n C2 H12 755 sing 37 n n C2 H13 755 sing 38 n n C14 H14 755 sing 39 n n C12 H15 755 sing 40 n n C15 H16 755 sing 41 n n C10 H17 755 sing 42 n n C10 H18 755 sing 43 n n C9 H19 755 sing 44 n n C H20 755 sing 45 n n C H21 755 sing 46 n n N H22 755 sing 47 n n C8 H23 755 sing 48 n n C8 H24 755 sing 49 n n C8 H25 755 sing 50 n n # _atom_sites.entry_id 5T36 _atom_sites.fract_transf_matrix[1][1] 0.012985 _atom_sites.fract_transf_matrix[1][2] 0.007497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 755 A 1 201 1 755 SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 HOH A 1 301 16 HOH HOH . G 6 HOH A 2 302 57 HOH HOH . G 6 HOH A 3 303 56 HOH HOH . G 6 HOH A 4 304 1 HOH HOH . G 6 HOH A 5 305 25 HOH HOH . G 6 HOH A 6 306 59 HOH HOH . G 6 HOH A 7 307 8 HOH HOH . G 6 HOH A 8 308 5 HOH HOH . G 6 HOH A 9 309 73 HOH HOH . G 6 HOH A 10 310 4 HOH HOH . G 6 HOH A 11 311 10 HOH HOH . G 6 HOH A 12 312 27 HOH HOH . G 6 HOH A 13 313 58 HOH HOH . G 6 HOH A 14 314 44 HOH HOH . G 6 HOH A 15 315 45 HOH HOH . G 6 HOH A 16 316 64 HOH HOH . G 6 HOH A 17 317 37 HOH HOH . G 6 HOH A 18 318 35 HOH HOH . G 6 HOH A 19 319 40 HOH HOH . G 6 HOH A 20 320 14 HOH HOH . G 6 HOH A 21 321 43 HOH HOH . G 6 HOH A 22 322 32 HOH HOH . G 6 HOH A 23 323 7 HOH HOH . G 6 HOH A 24 324 39 HOH HOH . G 6 HOH A 25 325 65 HOH HOH . G 6 HOH A 26 326 47 HOH HOH . G 6 HOH A 27 327 36 HOH HOH . G 6 HOH A 28 328 60 HOH HOH . G 6 HOH A 29 329 68 HOH HOH . G 6 HOH A 30 330 3 HOH HOH . G 6 HOH A 31 331 26 HOH HOH . G 6 HOH A 32 332 12 HOH HOH . G 6 HOH A 33 333 11 HOH HOH . G 6 HOH A 34 334 31 HOH HOH . G 6 HOH A 35 335 18 HOH HOH . G 6 HOH A 36 336 62 HOH HOH . G 6 HOH A 37 337 74 HOH HOH . G 6 HOH A 38 338 72 HOH HOH . G 6 HOH A 39 339 75 HOH HOH . G 6 HOH A 40 340 76 HOH HOH . G 6 HOH A 41 341 2 HOH HOH . G 6 HOH A 42 342 30 HOH HOH . G 6 HOH A 43 343 20 HOH HOH . G 6 HOH A 44 344 15 HOH HOH . G 6 HOH A 45 345 46 HOH HOH . G 6 HOH A 46 346 13 HOH HOH . G 6 HOH A 47 347 42 HOH HOH . G 6 HOH A 48 348 6 HOH HOH . G 6 HOH A 49 349 54 HOH HOH . G 6 HOH A 50 350 51 HOH HOH . G 6 HOH A 51 351 34 HOH HOH . G 6 HOH A 52 352 49 HOH HOH . G 6 HOH A 53 353 22 HOH HOH . G 6 HOH A 54 354 66 HOH HOH . G 6 HOH A 55 355 50 HOH HOH . G 6 HOH A 56 356 29 HOH HOH . G 6 HOH A 57 357 48 HOH HOH . G 6 HOH A 58 358 63 HOH HOH . G 6 HOH A 59 359 19 HOH HOH . G 6 HOH A 60 360 53 HOH HOH . G 6 HOH A 61 361 17 HOH HOH . G 6 HOH A 62 362 9 HOH HOH . G 6 HOH A 63 363 38 HOH HOH . G 6 HOH A 64 364 69 HOH HOH . G 6 HOH A 65 365 41 HOH HOH . G 6 HOH A 66 366 21 HOH HOH . G 6 HOH A 67 367 23 HOH HOH . G 6 HOH A 68 368 61 HOH HOH . G 6 HOH A 69 369 70 HOH HOH . G 6 HOH A 70 370 71 HOH HOH . G 6 HOH A 71 371 52 HOH HOH . G 6 HOH A 72 372 33 HOH HOH . G 6 HOH A 73 373 28 HOH HOH . G 6 HOH A 74 374 55 HOH HOH . G 6 HOH A 75 375 24 HOH HOH . G 6 HOH A 76 376 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 755 . . . B 2 15.81 16.983 33.754 1 24.58 ? O1 755 201 A 1 HETATM 2 C C7 755 . . . B 2 10.7 14.883 28.2 1 20.91 ? C7 755 201 A 1 HETATM 3 O O2 755 . . . B 2 17.227 18.581 33.046 1 25.5 ? O2 755 201 A 1 HETATM 4 C C6 755 . . . B 2 8.409 14.033 28.702 1 20.85 ? C6 755 201 A 1 HETATM 5 C C1 755 . . . B 2 11.102 13.532 34.155 1 23.23 ? C1 755 201 A 1 HETATM 6 N N1 755 . . . B 2 13.908 16.291 31.982 1 21.35 ? N1 755 201 A 1 HETATM 7 C C5 755 . . . B 2 9.317 15.272 28.756 1 20.2 ? C5 755 201 A 1 HETATM 8 C C4 755 . . . B 2 9.46 15.788 30.211 1 21.02 ? C4 755 201 A 1 HETATM 9 C C3 755 . . . B 2 10.25 15.158 32.514 1 21.24 ? C3 755 201 A 1 HETATM 10 C C2 755 . . . B 2 9.858 13.948 33.37 1 21.88 ? C2 755 201 A 1 HETATM 11 CL CL 755 . . . B 2 15.289 16.302 27.057 1 23.39 ? CL 755 201 A 1 HETATM 12 C C13 755 . . . B 2 15.592 16.683 28.708 1 20.79 ? C13 755 201 A 1 HETATM 13 C C14 755 . . . B 2 16.776 17.329 29.074 1 20.72 ? C14 755 201 A 1 HETATM 14 C C12 755 . . . B 2 14.651 16.346 29.684 1 21.45 ? C12 755 201 A 1 HETATM 15 C C11 755 . . . B 2 14.88 16.648 31.034 1 21.47 ? C11 755 201 A 1 HETATM 16 C C16 755 . . . B 2 16.07 17.297 31.402 1 22.31 ? C16 755 201 A 1 HETATM 17 C C17 755 . . . B 2 16.375 17.646 32.808 1 23.76 ? C17 755 201 A 1 HETATM 18 C C15 755 . . . B 2 17.01 17.634 30.419 1 21.94 ? C15 755 201 A 1 HETATM 19 C C10 755 . . . B 2 12.546 15.998 31.659 1 22.16 ? C10 755 201 A 1 HETATM 20 C C9 755 . . . B 2 11.735 15.439 32.825 1 22.23 ? C9 755 201 A 1 HETATM 21 C C 755 . . . B 2 12.277 14.12 33.381 1 23.09 ? C 755 201 A 1 HETATM 22 N N 755 . . . B 2 10.017 14.876 31.106 1 20.75 ? N 755 201 A 1 HETATM 23 O O 755 . . . B 2 9.107 16.924 30.542 1 21.89 ? O 755 201 A 1 HETATM 24 C C8 755 . . . B 2 8.737 16.36 27.836 1 20.98 ? C8 755 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #