data_5T36 # _model_server_result.job_id 7suT7fWwW_mvykE3pJWAGg _model_server_result.datetime_utc '2024-11-08 20:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5T36 # _exptl.entry_id 5T36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T36 _cell.length_a 77.009 _cell.length_b 77.009 _cell.length_c 123.24 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 120 n n C1 C2 BOG sing 121 n n C1 O5 BOG sing 122 n n C1 H1 BOG sing 123 n n O1 C1' BOG sing 124 n n C2 O2 BOG sing 125 n n C2 C3 BOG sing 126 n n C2 H2 BOG sing 127 n n O2 HO2 BOG sing 128 n n C3 O3 BOG sing 129 n n C3 C4 BOG sing 130 n n C3 H3 BOG sing 131 n n O3 HO3 BOG sing 132 n n C4 O4 BOG sing 133 n n C4 C5 BOG sing 134 n n C4 H4 BOG sing 135 n n O4 HO4 BOG sing 136 n n C5 O5 BOG sing 137 n n C5 C6 BOG sing 138 n n C5 H5 BOG sing 139 n n C6 O6 BOG sing 140 n n C6 H61 BOG sing 141 n n C6 H62 BOG sing 142 n n O6 HO6 BOG sing 143 n n C1' C2' BOG sing 144 n n C1' "H1'1" BOG sing 145 n n C1' "H1'2" BOG sing 146 n n C2' C3' BOG sing 147 n n C2' "H2'1" BOG sing 148 n n C2' "H2'2" BOG sing 149 n n C3' C4' BOG sing 150 n n C3' "H3'1" BOG sing 151 n n C3' "H3'2" BOG sing 152 n n C4' C5' BOG sing 153 n n C4' "H4'1" BOG sing 154 n n C4' "H4'2" BOG sing 155 n n C5' C6' BOG sing 156 n n C5' "H5'1" BOG sing 157 n n C5' "H5'2" BOG sing 158 n n C6' C7' BOG sing 159 n n C6' "H6'1" BOG sing 160 n n C6' "H6'2" BOG sing 161 n n C7' C8' BOG sing 162 n n C7' "H7'1" BOG sing 163 n n C7' "H7'2" BOG sing 164 n n C8' "H8'1" BOG sing 165 n n C8' "H8'2" BOG sing 166 n n C8' "H8'3" BOG sing 167 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5T36 _atom_sites.fract_transf_matrix[1][1] 0.012985 _atom_sites.fract_transf_matrix[1][2] 0.007497 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 755 A 1 201 1 755 SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 BOG A 1 203 2 BOG BOG . E 4 BOG A 1 204 3 BOG BOG . F 5 PG4 A 1 205 4 PG4 PG4 . G 6 HOH A 1 301 16 HOH HOH . G 6 HOH A 2 302 57 HOH HOH . G 6 HOH A 3 303 56 HOH HOH . G 6 HOH A 4 304 1 HOH HOH . G 6 HOH A 5 305 25 HOH HOH . G 6 HOH A 6 306 59 HOH HOH . G 6 HOH A 7 307 8 HOH HOH . G 6 HOH A 8 308 5 HOH HOH . G 6 HOH A 9 309 73 HOH HOH . G 6 HOH A 10 310 4 HOH HOH . G 6 HOH A 11 311 10 HOH HOH . G 6 HOH A 12 312 27 HOH HOH . G 6 HOH A 13 313 58 HOH HOH . G 6 HOH A 14 314 44 HOH HOH . G 6 HOH A 15 315 45 HOH HOH . G 6 HOH A 16 316 64 HOH HOH . G 6 HOH A 17 317 37 HOH HOH . G 6 HOH A 18 318 35 HOH HOH . G 6 HOH A 19 319 40 HOH HOH . G 6 HOH A 20 320 14 HOH HOH . G 6 HOH A 21 321 43 HOH HOH . G 6 HOH A 22 322 32 HOH HOH . G 6 HOH A 23 323 7 HOH HOH . G 6 HOH A 24 324 39 HOH HOH . G 6 HOH A 25 325 65 HOH HOH . G 6 HOH A 26 326 47 HOH HOH . G 6 HOH A 27 327 36 HOH HOH . G 6 HOH A 28 328 60 HOH HOH . G 6 HOH A 29 329 68 HOH HOH . G 6 HOH A 30 330 3 HOH HOH . G 6 HOH A 31 331 26 HOH HOH . G 6 HOH A 32 332 12 HOH HOH . G 6 HOH A 33 333 11 HOH HOH . G 6 HOH A 34 334 31 HOH HOH . G 6 HOH A 35 335 18 HOH HOH . G 6 HOH A 36 336 62 HOH HOH . G 6 HOH A 37 337 74 HOH HOH . G 6 HOH A 38 338 72 HOH HOH . G 6 HOH A 39 339 75 HOH HOH . G 6 HOH A 40 340 76 HOH HOH . G 6 HOH A 41 341 2 HOH HOH . G 6 HOH A 42 342 30 HOH HOH . G 6 HOH A 43 343 20 HOH HOH . G 6 HOH A 44 344 15 HOH HOH . G 6 HOH A 45 345 46 HOH HOH . G 6 HOH A 46 346 13 HOH HOH . G 6 HOH A 47 347 42 HOH HOH . G 6 HOH A 48 348 6 HOH HOH . G 6 HOH A 49 349 54 HOH HOH . G 6 HOH A 50 350 51 HOH HOH . G 6 HOH A 51 351 34 HOH HOH . G 6 HOH A 52 352 49 HOH HOH . G 6 HOH A 53 353 22 HOH HOH . G 6 HOH A 54 354 66 HOH HOH . G 6 HOH A 55 355 50 HOH HOH . G 6 HOH A 56 356 29 HOH HOH . G 6 HOH A 57 357 48 HOH HOH . G 6 HOH A 58 358 63 HOH HOH . G 6 HOH A 59 359 19 HOH HOH . G 6 HOH A 60 360 53 HOH HOH . G 6 HOH A 61 361 17 HOH HOH . G 6 HOH A 62 362 9 HOH HOH . G 6 HOH A 63 363 38 HOH HOH . G 6 HOH A 64 364 69 HOH HOH . G 6 HOH A 65 365 41 HOH HOH . G 6 HOH A 66 366 21 HOH HOH . G 6 HOH A 67 367 23 HOH HOH . G 6 HOH A 68 368 61 HOH HOH . G 6 HOH A 69 369 70 HOH HOH . G 6 HOH A 70 370 71 HOH HOH . G 6 HOH A 71 371 52 HOH HOH . G 6 HOH A 72 372 33 HOH HOH . G 6 HOH A 73 373 28 HOH HOH . G 6 HOH A 74 374 55 HOH HOH . G 6 HOH A 75 375 24 HOH HOH . G 6 HOH A 76 376 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 4 10.052 19.998 9.877 1 36.38 ? C1 BOG 203 A 1 HETATM 2 O O1 BOG . . . D 4 10.005 19.204 11.061 1 36.25 ? O1 BOG 203 A 1 HETATM 3 C C2 BOG . . . D 4 10.055 19.097 8.642 1 36.2 ? C2 BOG 203 A 1 HETATM 4 O O2 BOG . . . D 4 11.239 18.294 8.635 1 35.78 ? O2 BOG 203 A 1 HETATM 5 C C3 BOG . . . D 4 10.003 19.929 7.36 1 36.58 ? C3 BOG 203 A 1 HETATM 6 O O3 BOG . . . D 4 9.804 19.067 6.234 1 36.13 ? O3 BOG 203 A 1 HETATM 7 C C4 BOG . . . D 4 8.893 20.98 7.405 1 37.09 ? C4 BOG 203 A 1 HETATM 8 O O4 BOG . . . D 4 9.05 21.873 6.295 1 37.46 ? O4 BOG 203 A 1 HETATM 9 C C5 BOG . . . D 4 8.926 21.764 8.721 1 37.14 ? C5 BOG 203 A 1 HETATM 10 O O5 BOG . . . D 4 8.912 20.863 9.835 1 37.12 ? O5 BOG 203 A 1 HETATM 11 C C6 BOG . . . D 4 7.751 22.73 8.846 1 36.93 ? C6 BOG 203 A 1 HETATM 12 O O6 BOG . . . D 4 6.535 22.012 9.091 1 37.29 ? O6 BOG 203 A 1 HETATM 13 C C1' BOG . . . D 4 10.636 19.85 12.167 1 37.01 ? C1' BOG 203 A 1 HETATM 14 C C2' BOG . . . D 4 10.323 19.087 13.449 1 37.01 ? C2' BOG 203 A 1 HETATM 15 C C3' BOG . . . D 4 10.079 20.04 14.612 1 37.6 ? C3' BOG 203 A 1 HETATM 16 C C4' BOG . . . D 4 10.404 19.369 15.941 1 37.61 ? C4' BOG 203 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #