data_5T3G
#
_model_server_result.job_id            xLAbopV6RHw3acv-n4fDpA 
_model_server_result.datetime_utc      '2024-11-28 21:18:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t3g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    5T3G 
#
_exptl.entry_id    5T3G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              123.016 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            selenourea 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T3G 
_cell.length_a            57.615 
_cell.length_b            57.615 
_cell.length_c            150.808 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T3G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf9 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.018 ? 
#
_chem_comp.formula           'C H4 N2 Se' 
_chem_comp.formula_weight    123.016 
_chem_comp.id                SEY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              selenourea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SE C SEY doub 269 n n 
N2 C SEY sing 270 n n 
C N1 SEY sing 271 n n 
N2 H2 SEY sing 272 n n 
N1 H3 SEY sing 273 n n 
N1 H4 SEY sing 274 n n 
N2 H1 SEY sing 275 n n 
#
_atom_sites.entry_id                     5T3G 
_atom_sites.fract_transf_matrix[1][1]    0.017357 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017357 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SEY A 1 301 1 SEY SEU . 
C 2 SEY A 1 302 2 SEY SEU . 
D 2 SEY A 1 303 3 SEY SEU . 
E 2 SEY A 1 304 4 SEY SEU . 
F 2 SEY A 1 305 5 SEY SEU . 
G 2 SEY A 1 306 6 SEY SEU . 
H 2 SEY A 1 307 7 SEY SEU . 
I 2 SEY A 1 308 8 SEY SEU . 
J 2 SEY A 1 309 9 SEY SEU . 
K 2 SEY A 1 310 10 SEY SEU . 
L 2 SEY A 1 311 11 SEY SEU . 
M 2 SEY A 1 312 12 SEY SEU . 
N 2 SEY A 1 313 13 SEY SEU . 
O 3 TLA A 1 314 1 TLA TLA . 
P 4 HOH A 1 401 148 HOH HOH . 
P 4 HOH A 2 402 28 HOH HOH . 
P 4 HOH A 3 403 129 HOH HOH . 
P 4 HOH A 4 404 171 HOH HOH . 
P 4 HOH A 5 405 52 HOH HOH . 
P 4 HOH A 6 406 177 HOH HOH . 
P 4 HOH A 7 407 35 HOH HOH . 
P 4 HOH A 8 408 3 HOH HOH . 
P 4 HOH A 9 409 196 HOH HOH . 
P 4 HOH A 10 410 103 HOH HOH . 
P 4 HOH A 11 411 24 HOH HOH . 
P 4 HOH A 12 412 163 HOH HOH . 
P 4 HOH A 13 413 36 HOH HOH . 
P 4 HOH A 14 414 69 HOH HOH . 
P 4 HOH A 15 415 43 HOH HOH . 
P 4 HOH A 16 416 30 HOH HOH . 
P 4 HOH A 17 417 89 HOH HOH . 
P 4 HOH A 18 418 191 HOH HOH . 
P 4 HOH A 19 419 140 HOH HOH . 
P 4 HOH A 20 420 80 HOH HOH . 
P 4 HOH A 21 421 4 HOH HOH . 
P 4 HOH A 22 422 139 HOH HOH . 
P 4 HOH A 23 423 90 HOH HOH . 
P 4 HOH A 24 424 49 HOH HOH . 
P 4 HOH A 25 425 10 HOH HOH . 
P 4 HOH A 26 426 162 HOH HOH . 
P 4 HOH A 27 427 128 HOH HOH . 
P 4 HOH A 28 428 160 HOH HOH . 
P 4 HOH A 29 429 25 HOH HOH . 
P 4 HOH A 30 430 159 HOH HOH . 
P 4 HOH A 31 431 84 HOH HOH . 
P 4 HOH A 32 432 125 HOH HOH . 
P 4 HOH A 33 433 144 HOH HOH . 
P 4 HOH A 34 434 146 HOH HOH . 
P 4 HOH A 35 435 6 HOH HOH . 
P 4 HOH A 36 436 73 HOH HOH . 
P 4 HOH A 37 437 174 HOH HOH . 
P 4 HOH A 38 438 83 HOH HOH . 
P 4 HOH A 39 439 161 HOH HOH . 
P 4 HOH A 40 440 194 HOH HOH . 
P 4 HOH A 41 441 33 HOH HOH . 
P 4 HOH A 42 442 2 HOH HOH . 
P 4 HOH A 43 443 101 HOH HOH . 
P 4 HOH A 44 444 7 HOH HOH . 
P 4 HOH A 45 445 189 HOH HOH . 
P 4 HOH A 46 446 184 HOH HOH . 
P 4 HOH A 47 447 63 HOH HOH . 
P 4 HOH A 48 448 34 HOH HOH . 
P 4 HOH A 49 449 8 HOH HOH . 
P 4 HOH A 50 450 65 HOH HOH . 
P 4 HOH A 51 451 26 HOH HOH . 
P 4 HOH A 52 452 98 HOH HOH . 
P 4 HOH A 53 453 17 HOH HOH . 
P 4 HOH A 54 454 102 HOH HOH . 
P 4 HOH A 55 455 86 HOH HOH . 
P 4 HOH A 56 456 175 HOH HOH . 
P 4 HOH A 57 457 132 HOH HOH . 
P 4 HOH A 58 458 66 HOH HOH . 
P 4 HOH A 59 459 121 HOH HOH . 
P 4 HOH A 60 460 113 HOH HOH . 
P 4 HOH A 61 461 27 HOH HOH . 
P 4 HOH A 62 462 39 HOH HOH . 
P 4 HOH A 63 463 127 HOH HOH . 
P 4 HOH A 64 464 178 HOH HOH . 
P 4 HOH A 65 465 58 HOH HOH . 
P 4 HOH A 66 466 94 HOH HOH . 
P 4 HOH A 67 467 182 HOH HOH . 
P 4 HOH A 68 468 51 HOH HOH . 
P 4 HOH A 69 469 62 HOH HOH . 
P 4 HOH A 70 470 29 HOH HOH . 
P 4 HOH A 71 471 14 HOH HOH . 
P 4 HOH A 72 472 61 HOH HOH . 
P 4 HOH A 73 473 56 HOH HOH . 
P 4 HOH A 74 474 54 HOH HOH . 
P 4 HOH A 75 475 42 HOH HOH . 
P 4 HOH A 76 476 107 HOH HOH . 
P 4 HOH A 77 477 150 HOH HOH . 
P 4 HOH A 78 478 95 HOH HOH . 
P 4 HOH A 79 479 31 HOH HOH . 
P 4 HOH A 80 480 38 HOH HOH . 
P 4 HOH A 81 481 20 HOH HOH . 
P 4 HOH A 82 482 137 HOH HOH . 
P 4 HOH A 83 483 120 HOH HOH . 
P 4 HOH A 84 484 44 HOH HOH . 
P 4 HOH A 85 485 13 HOH HOH . 
P 4 HOH A 86 486 119 HOH HOH . 
P 4 HOH A 87 487 168 HOH HOH . 
P 4 HOH A 88 488 157 HOH HOH . 
P 4 HOH A 89 489 16 HOH HOH . 
P 4 HOH A 90 490 87 HOH HOH . 
P 4 HOH A 91 491 12 HOH HOH . 
P 4 HOH A 92 492 59 HOH HOH . 
P 4 HOH A 93 493 37 HOH HOH . 
P 4 HOH A 94 494 147 HOH HOH . 
P 4 HOH A 95 495 185 HOH HOH . 
P 4 HOH A 96 496 93 HOH HOH . 
P 4 HOH A 97 497 47 HOH HOH . 
P 4 HOH A 98 498 15 HOH HOH . 
P 4 HOH A 99 499 134 HOH HOH . 
P 4 HOH A 100 500 165 HOH HOH . 
P 4 HOH A 101 501 111 HOH HOH . 
P 4 HOH A 102 502 78 HOH HOH . 
P 4 HOH A 103 503 133 HOH HOH . 
P 4 HOH A 104 504 60 HOH HOH . 
P 4 HOH A 105 505 114 HOH HOH . 
P 4 HOH A 106 506 156 HOH HOH . 
P 4 HOH A 107 507 179 HOH HOH . 
P 4 HOH A 108 508 1 HOH HOH . 
P 4 HOH A 109 509 46 HOH HOH . 
P 4 HOH A 110 510 11 HOH HOH . 
P 4 HOH A 111 511 186 HOH HOH . 
P 4 HOH A 112 512 183 HOH HOH . 
P 4 HOH A 113 513 124 HOH HOH . 
P 4 HOH A 114 514 131 HOH HOH . 
P 4 HOH A 115 515 118 HOH HOH . 
P 4 HOH A 116 516 151 HOH HOH . 
P 4 HOH A 117 517 105 HOH HOH . 
P 4 HOH A 118 518 88 HOH HOH . 
P 4 HOH A 119 519 75 HOH HOH . 
P 4 HOH A 120 520 32 HOH HOH . 
P 4 HOH A 121 521 57 HOH HOH . 
P 4 HOH A 122 522 45 HOH HOH . 
P 4 HOH A 123 523 79 HOH HOH . 
P 4 HOH A 124 524 91 HOH HOH . 
P 4 HOH A 125 525 153 HOH HOH . 
P 4 HOH A 126 526 5 HOH HOH . 
P 4 HOH A 127 527 71 HOH HOH . 
P 4 HOH A 128 528 77 HOH HOH . 
P 4 HOH A 129 529 108 HOH HOH . 
P 4 HOH A 130 530 64 HOH HOH . 
P 4 HOH A 131 531 104 HOH HOH . 
P 4 HOH A 132 532 9 HOH HOH . 
P 4 HOH A 133 533 82 HOH HOH . 
P 4 HOH A 134 534 50 HOH HOH . 
P 4 HOH A 135 535 23 HOH HOH . 
P 4 HOH A 136 536 176 HOH HOH . 
P 4 HOH A 137 537 70 HOH HOH . 
P 4 HOH A 138 538 53 HOH HOH . 
P 4 HOH A 139 539 55 HOH HOH . 
P 4 HOH A 140 540 187 HOH HOH . 
P 4 HOH A 141 541 92 HOH HOH . 
P 4 HOH A 142 542 126 HOH HOH . 
P 4 HOH A 143 543 41 HOH HOH . 
P 4 HOH A 144 544 169 HOH HOH . 
P 4 HOH A 145 545 166 HOH HOH . 
P 4 HOH A 146 546 173 HOH HOH . 
P 4 HOH A 147 547 180 HOH HOH . 
P 4 HOH A 148 548 48 HOH HOH . 
P 4 HOH A 149 549 81 HOH HOH . 
P 4 HOH A 150 550 22 HOH HOH . 
P 4 HOH A 151 551 67 HOH HOH . 
P 4 HOH A 152 552 72 HOH HOH . 
P 4 HOH A 153 553 123 HOH HOH . 
P 4 HOH A 154 554 143 HOH HOH . 
P 4 HOH A 155 555 74 HOH HOH . 
P 4 HOH A 156 556 18 HOH HOH . 
P 4 HOH A 157 557 172 HOH HOH . 
P 4 HOH A 158 558 21 HOH HOH . 
P 4 HOH A 159 559 40 HOH HOH . 
P 4 HOH A 160 560 149 HOH HOH . 
P 4 HOH A 161 561 135 HOH HOH . 
P 4 HOH A 162 562 188 HOH HOH . 
P 4 HOH A 163 563 192 HOH HOH . 
P 4 HOH A 164 564 109 HOH HOH . 
P 4 HOH A 165 565 116 HOH HOH . 
P 4 HOH A 166 566 170 HOH HOH . 
P 4 HOH A 167 567 154 HOH HOH . 
P 4 HOH A 168 568 96 HOH HOH . 
P 4 HOH A 169 569 142 HOH HOH . 
P 4 HOH A 170 570 99 HOH HOH . 
P 4 HOH A 171 571 76 HOH HOH . 
P 4 HOH A 172 572 85 HOH HOH . 
P 4 HOH A 173 573 158 HOH HOH . 
P 4 HOH A 174 574 190 HOH HOH . 
P 4 HOH A 175 575 115 HOH HOH . 
P 4 HOH A 176 576 19 HOH HOH . 
P 4 HOH A 177 577 193 HOH HOH . 
P 4 HOH A 178 578 167 HOH HOH . 
P 4 HOH A 179 579 110 HOH HOH . 
P 4 HOH A 180 580 97 HOH HOH . 
P 4 HOH A 181 581 145 HOH HOH . 
P 4 HOH A 182 582 164 HOH HOH . 
P 4 HOH A 183 583 152 HOH HOH . 
P 4 HOH A 184 584 117 HOH HOH . 
P 4 HOH A 185 585 112 HOH HOH . 
P 4 HOH A 186 586 130 HOH HOH . 
P 4 HOH A 187 587 122 HOH HOH . 
P 4 HOH A 188 588 141 HOH HOH . 
P 4 HOH A 189 589 155 HOH HOH . 
P 4 HOH A 190 590 138 HOH HOH . 
P 4 HOH A 191 591 181 HOH HOH . 
P 4 HOH A 192 592 136 HOH HOH . 
P 4 HOH A 193 593 195 HOH HOH . 
P 4 HOH A 194 594 68 HOH HOH . 
P 4 HOH A 195 595 100 HOH HOH . 
P 4 HOH A 196 596 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE SEY . . . I 2 -3.027 7.57 59.189 0.32 32.35 ? SE SEY 308 A 1 
HETATM 2 C C SEY . . . I 2 -4.516 6.967 60.152 0.32 9.72 ? C SEY 308 A 1 
HETATM 3 N N2 SEY . . . I 2 -4.636 5.697 60.441 0.32 19.27 ? N2 SEY 308 A 1 
HETATM 4 N N1 SEY . . . I 2 -5.43 7.822 60.561 0.32 16.9 ? N1 SEY 308 A 1 
#
_model_server_stats.io_time_ms              86 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#