data_5T3H
#
_model_server_result.job_id            7lQ-vwvixXWgjMDrPLq5Kg 
_model_server_result.datetime_utc      '2024-10-17 14:12:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    5T3H 
#
_exptl.entry_id    5T3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              123.016 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            selenourea 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T3H 
_cell.length_a            53.878 
_cell.length_b            56.64 
_cell.length_c            65.378 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc5 B CA CA . A CA 301 1_555 Q O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 B CA CA . A CA 301 1_555 Q O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C H4 N2 Se' 
_chem_comp.formula_weight    123.016 
_chem_comp.id                SEY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              selenourea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5T3H 
_atom_sites.fract_transf_matrix[1][1]    0.01856 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015296 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 301 CA CA . 
C 3 BEN A 1 302 302 BEN BEN . 
D 4 SEY A 1 303 303 SEY SEY . 
E 4 SEY A 1 304 304 SEY SEY . 
F 4 SEY A 1 305 305 SEY SEY . 
G 4 SEY A 1 306 306 SEY SEY . 
H 4 SEY A 1 307 307 SEY SEY . 
I 4 SEY A 1 308 308 SEY SEY . 
J 4 SEY A 1 309 309 SEY SEY . 
K 4 SEY A 1 310 310 SEY SEY . 
L 4 SEY A 1 311 311 SEY SEY . 
M 4 SEY A 1 312 312 SEY SEY . 
N 5 SO4 A 1 313 313 SO4 SO4 . 
O 5 SO4 A 1 314 314 SO4 SO4 . 
P 6 GOL A 1 315 315 GOL GOL . 
Q 7 HOH A 1 401 401 HOH HOH . 
Q 7 HOH A 2 402 402 HOH HOH . 
Q 7 HOH A 3 403 403 HOH HOH . 
Q 7 HOH A 4 404 408 HOH HOH . 
Q 7 HOH A 5 405 404 HOH HOH . 
Q 7 HOH A 6 406 407 HOH HOH . 
Q 7 HOH A 7 407 411 HOH HOH . 
Q 7 HOH A 8 408 412 HOH HOH . 
Q 7 HOH A 9 409 405 HOH HOH . 
Q 7 HOH A 10 410 418 HOH HOH . 
Q 7 HOH A 11 411 410 HOH HOH . 
Q 7 HOH A 12 412 414 HOH HOH . 
Q 7 HOH A 13 413 415 HOH HOH . 
Q 7 HOH A 14 414 419 HOH HOH . 
Q 7 HOH A 15 415 413 HOH HOH . 
Q 7 HOH A 16 416 416 HOH HOH . 
Q 7 HOH A 17 417 420 HOH HOH . 
Q 7 HOH A 18 418 406 HOH HOH . 
Q 7 HOH A 19 419 421 HOH HOH . 
Q 7 HOH A 20 420 424 HOH HOH . 
Q 7 HOH A 21 421 425 HOH HOH . 
Q 7 HOH A 22 422 426 HOH HOH . 
Q 7 HOH A 23 423 422 HOH HOH . 
Q 7 HOH A 24 424 434 HOH HOH . 
Q 7 HOH A 25 425 428 HOH HOH . 
Q 7 HOH A 26 426 432 HOH HOH . 
Q 7 HOH A 27 427 427 HOH HOH . 
Q 7 HOH A 28 428 430 HOH HOH . 
Q 7 HOH A 29 429 429 HOH HOH . 
Q 7 HOH A 30 430 431 HOH HOH . 
Q 7 HOH A 31 431 437 HOH HOH . 
Q 7 HOH A 32 432 433 HOH HOH . 
Q 7 HOH A 33 433 440 HOH HOH . 
Q 7 HOH A 34 434 439 HOH HOH . 
Q 7 HOH A 35 435 443 HOH HOH . 
Q 7 HOH A 36 436 435 HOH HOH . 
Q 7 HOH A 37 437 441 HOH HOH . 
Q 7 HOH A 38 438 442 HOH HOH . 
Q 7 HOH A 39 439 445 HOH HOH . 
Q 7 HOH A 40 440 438 HOH HOH . 
Q 7 HOH A 41 441 436 HOH HOH . 
Q 7 HOH A 42 442 446 HOH HOH . 
Q 7 HOH A 43 443 447 HOH HOH . 
Q 7 HOH A 44 444 448 HOH HOH . 
Q 7 HOH A 45 445 417 HOH HOH . 
Q 7 HOH A 46 446 449 HOH HOH . 
Q 7 HOH A 47 447 444 HOH HOH . 
Q 7 HOH A 48 448 454 HOH HOH . 
Q 7 HOH A 49 449 458 HOH HOH . 
Q 7 HOH A 50 450 451 HOH HOH . 
Q 7 HOH A 51 451 453 HOH HOH . 
Q 7 HOH A 52 452 450 HOH HOH . 
Q 7 HOH A 53 453 461 HOH HOH . 
Q 7 HOH A 54 454 452 HOH HOH . 
Q 7 HOH A 55 455 457 HOH HOH . 
Q 7 HOH A 56 456 460 HOH HOH . 
Q 7 HOH A 57 457 456 HOH HOH . 
Q 7 HOH A 58 458 464 HOH HOH . 
Q 7 HOH A 59 459 455 HOH HOH . 
Q 7 HOH A 60 460 463 HOH HOH . 
Q 7 HOH A 61 461 459 HOH HOH . 
Q 7 HOH A 62 462 467 HOH HOH . 
Q 7 HOH A 63 463 462 HOH HOH . 
Q 7 HOH A 64 464 423 HOH HOH . 
Q 7 HOH A 65 465 465 HOH HOH . 
Q 7 HOH A 66 466 475 HOH HOH . 
Q 7 HOH A 67 467 468 HOH HOH . 
Q 7 HOH A 68 468 472 HOH HOH . 
Q 7 HOH A 69 469 474 HOH HOH . 
Q 7 HOH A 70 470 478 HOH HOH . 
Q 7 HOH A 71 471 470 HOH HOH . 
Q 7 HOH A 72 472 473 HOH HOH . 
Q 7 HOH A 73 473 471 HOH HOH . 
Q 7 HOH A 74 474 477 HOH HOH . 
Q 7 HOH A 75 475 469 HOH HOH . 
Q 7 HOH A 76 476 466 HOH HOH . 
Q 7 HOH A 77 477 479 HOH HOH . 
Q 7 HOH A 78 478 409 HOH HOH . 
Q 7 HOH A 79 479 476 HOH HOH . 
Q 7 HOH A 80 480 480 HOH HOH . 
Q 7 HOH A 81 481 484 HOH HOH . 
Q 7 HOH A 82 482 508 HOH HOH . 
Q 7 HOH A 83 483 483 HOH HOH . 
Q 7 HOH A 84 484 485 HOH HOH . 
Q 7 HOH A 85 485 486 HOH HOH . 
Q 7 HOH A 86 486 481 HOH HOH . 
Q 7 HOH A 87 487 487 HOH HOH . 
Q 7 HOH A 88 488 488 HOH HOH . 
Q 7 HOH A 89 489 482 HOH HOH . 
Q 7 HOH A 90 490 490 HOH HOH . 
Q 7 HOH A 91 491 489 HOH HOH . 
Q 7 HOH A 92 492 495 HOH HOH . 
Q 7 HOH A 93 493 491 HOH HOH . 
Q 7 HOH A 94 494 493 HOH HOH . 
Q 7 HOH A 95 495 496 HOH HOH . 
Q 7 HOH A 96 496 494 HOH HOH . 
Q 7 HOH A 97 497 492 HOH HOH . 
Q 7 HOH A 98 498 497 HOH HOH . 
Q 7 HOH A 99 499 499 HOH HOH . 
Q 7 HOH A 100 500 512 HOH HOH . 
Q 7 HOH A 101 501 498 HOH HOH . 
Q 7 HOH A 102 502 505 HOH HOH . 
Q 7 HOH A 103 503 507 HOH HOH . 
Q 7 HOH A 104 504 501 HOH HOH . 
Q 7 HOH A 105 505 502 HOH HOH . 
Q 7 HOH A 106 506 503 HOH HOH . 
Q 7 HOH A 107 507 504 HOH HOH . 
Q 7 HOH A 108 508 517 HOH HOH . 
Q 7 HOH A 109 509 500 HOH HOH . 
Q 7 HOH A 110 510 514 HOH HOH . 
Q 7 HOH A 111 511 510 HOH HOH . 
Q 7 HOH A 112 512 515 HOH HOH . 
Q 7 HOH A 113 513 511 HOH HOH . 
Q 7 HOH A 114 514 522 HOH HOH . 
Q 7 HOH A 115 515 518 HOH HOH . 
Q 7 HOH A 116 516 513 HOH HOH . 
Q 7 HOH A 117 517 520 HOH HOH . 
Q 7 HOH A 118 518 516 HOH HOH . 
Q 7 HOH A 119 519 523 HOH HOH . 
Q 7 HOH A 120 520 529 HOH HOH . 
Q 7 HOH A 121 521 519 HOH HOH . 
Q 7 HOH A 122 522 506 HOH HOH . 
Q 7 HOH A 123 523 524 HOH HOH . 
Q 7 HOH A 124 524 526 HOH HOH . 
Q 7 HOH A 125 525 527 HOH HOH . 
Q 7 HOH A 126 526 525 HOH HOH . 
Q 7 HOH A 127 527 528 HOH HOH . 
Q 7 HOH A 128 528 521 HOH HOH . 
Q 7 HOH A 129 529 531 HOH HOH . 
Q 7 HOH A 130 530 530 HOH HOH . 
Q 7 HOH A 131 531 532 HOH HOH . 
Q 7 HOH A 132 532 535 HOH HOH . 
Q 7 HOH A 133 533 533 HOH HOH . 
Q 7 HOH A 134 534 536 HOH HOH . 
Q 7 HOH A 135 535 537 HOH HOH . 
Q 7 HOH A 136 536 538 HOH HOH . 
Q 7 HOH A 137 537 539 HOH HOH . 
Q 7 HOH A 138 538 509 HOH HOH . 
Q 7 HOH A 139 539 540 HOH HOH . 
Q 7 HOH A 140 540 534 HOH HOH . 
Q 7 HOH A 141 541 543 HOH HOH . 
Q 7 HOH A 142 542 542 HOH HOH . 
Q 7 HOH A 143 543 541 HOH HOH . 
Q 7 HOH A 144 544 544 HOH HOH . 
Q 7 HOH A 145 545 545 HOH HOH . 
Q 7 HOH A 146 546 552 HOH HOH . 
Q 7 HOH A 147 547 546 HOH HOH . 
Q 7 HOH A 148 548 547 HOH HOH . 
Q 7 HOH A 149 549 548 HOH HOH . 
Q 7 HOH A 150 550 549 HOH HOH . 
Q 7 HOH A 151 551 550 HOH HOH . 
Q 7 HOH A 152 552 554 HOH HOH . 
Q 7 HOH A 153 553 551 HOH HOH . 
Q 7 HOH A 154 554 553 HOH HOH . 
Q 7 HOH A 155 555 555 HOH HOH . 
Q 7 HOH A 156 556 556 HOH HOH . 
Q 7 HOH A 157 557 557 HOH HOH . 
Q 7 HOH A 158 558 559 HOH HOH . 
Q 7 HOH A 159 559 558 HOH HOH . 
Q 7 HOH A 160 560 560 HOH HOH . 
Q 7 HOH A 161 561 561 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE SEY . . . L 4 38.55 13.58 30.959 0.37 38.12 ? SE SEY 311 A 1 
HETATM 2 C C SEY . . . L 4 37.548 13.528 32.534 0.37 24.04 ? C SEY 311 A 1 
HETATM 3 N N2 SEY . . . L 4 36.312 13.996 32.548 0.37 16.77 ? N2 SEY 311 A 1 
HETATM 4 N N1 SEY . . . L 4 38.076 13.021 33.632 0.37 24.2 ? N1 SEY 311 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#