data_5T3J
#
_model_server_result.job_id            lLBdAJKWdH4IUTbE3KPlmA 
_model_server_result.datetime_utc      '2024-10-17 14:20:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t3j 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5T3J 
#
_exptl.entry_id    5T3J 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              123.016 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            selenourea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5T3J 
_cell.length_a            119.635 
_cell.length_b            119.635 
_cell.length_c            92.906 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5T3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 59.8175 103.606949 0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C H4 N2 Se' 
_chem_comp.formula_weight    123.016 
_chem_comp.id                SEY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              selenourea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SE C SEY doub 294 n n 
N2 C SEY sing 295 n n 
C N1 SEY sing 296 n n 
N2 H2 SEY sing 297 n n 
N1 H3 SEY sing 298 n n 
N1 H4 SEY sing 299 n n 
N2 H1 SEY sing 300 n n 
#
_atom_sites.entry_id                     5T3J 
_atom_sites.fract_transf_matrix[1][1]    0.008359 
_atom_sites.fract_transf_matrix[1][2]    0.004826 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010764 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SEY A 1 401 1 SEY SEU . 
C 3 PO4 A 1 402 1 PO4 PO4 . 
D 4 HOH A 1 501 8 HOH HOH . 
D 4 HOH A 2 502 21 HOH HOH . 
D 4 HOH A 3 503 28 HOH HOH . 
D 4 HOH A 4 504 4 HOH HOH . 
D 4 HOH A 5 505 66 HOH HOH . 
D 4 HOH A 6 506 43 HOH HOH . 
D 4 HOH A 7 507 5 HOH HOH . 
D 4 HOH A 8 508 42 HOH HOH . 
D 4 HOH A 9 509 23 HOH HOH . 
D 4 HOH A 10 510 38 HOH HOH . 
D 4 HOH A 11 511 44 HOH HOH . 
D 4 HOH A 12 512 69 HOH HOH . 
D 4 HOH A 13 513 48 HOH HOH . 
D 4 HOH A 14 514 10 HOH HOH . 
D 4 HOH A 15 515 2 HOH HOH . 
D 4 HOH A 16 516 65 HOH HOH . 
D 4 HOH A 17 517 19 HOH HOH . 
D 4 HOH A 18 518 18 HOH HOH . 
D 4 HOH A 19 519 16 HOH HOH . 
D 4 HOH A 20 520 39 HOH HOH . 
D 4 HOH A 21 521 29 HOH HOH . 
D 4 HOH A 22 522 15 HOH HOH . 
D 4 HOH A 23 523 30 HOH HOH . 
D 4 HOH A 24 524 51 HOH HOH . 
D 4 HOH A 25 525 31 HOH HOH . 
D 4 HOH A 26 526 75 HOH HOH . 
D 4 HOH A 27 527 54 HOH HOH . 
D 4 HOH A 28 528 45 HOH HOH . 
D 4 HOH A 29 529 36 HOH HOH . 
D 4 HOH A 30 530 25 HOH HOH . 
D 4 HOH A 31 531 9 HOH HOH . 
D 4 HOH A 32 532 37 HOH HOH . 
D 4 HOH A 33 533 26 HOH HOH . 
D 4 HOH A 34 534 3 HOH HOH . 
D 4 HOH A 35 535 57 HOH HOH . 
D 4 HOH A 36 536 34 HOH HOH . 
D 4 HOH A 37 537 46 HOH HOH . 
D 4 HOH A 38 538 14 HOH HOH . 
D 4 HOH A 39 539 79 HOH HOH . 
D 4 HOH A 40 540 12 HOH HOH . 
D 4 HOH A 41 541 33 HOH HOH . 
D 4 HOH A 42 542 6 HOH HOH . 
D 4 HOH A 43 543 72 HOH HOH . 
D 4 HOH A 44 544 17 HOH HOH . 
D 4 HOH A 45 545 20 HOH HOH . 
D 4 HOH A 46 546 7 HOH HOH . 
D 4 HOH A 47 547 41 HOH HOH . 
D 4 HOH A 48 548 35 HOH HOH . 
D 4 HOH A 49 549 11 HOH HOH . 
D 4 HOH A 50 550 74 HOH HOH . 
D 4 HOH A 51 551 27 HOH HOH . 
D 4 HOH A 52 552 22 HOH HOH . 
D 4 HOH A 53 553 47 HOH HOH . 
D 4 HOH A 54 554 77 HOH HOH . 
D 4 HOH A 55 555 58 HOH HOH . 
D 4 HOH A 56 556 59 HOH HOH . 
D 4 HOH A 57 557 52 HOH HOH . 
D 4 HOH A 58 558 49 HOH HOH . 
D 4 HOH A 59 559 63 HOH HOH . 
D 4 HOH A 60 560 50 HOH HOH . 
D 4 HOH A 61 561 32 HOH HOH . 
D 4 HOH A 62 562 24 HOH HOH . 
D 4 HOH A 63 563 71 HOH HOH . 
D 4 HOH A 64 564 60 HOH HOH . 
D 4 HOH A 65 565 64 HOH HOH . 
D 4 HOH A 66 566 68 HOH HOH . 
D 4 HOH A 67 567 61 HOH HOH . 
D 4 HOH A 68 568 78 HOH HOH . 
D 4 HOH A 69 569 40 HOH HOH . 
D 4 HOH A 70 570 62 HOH HOH . 
D 4 HOH A 71 571 73 HOH HOH . 
D 4 HOH A 72 572 76 HOH HOH . 
D 4 HOH A 73 573 56 HOH HOH . 
D 4 HOH A 74 574 1 HOH HOH . 
D 4 HOH A 75 575 13 HOH HOH . 
D 4 HOH A 76 576 70 HOH HOH . 
D 4 HOH A 77 577 67 HOH HOH . 
D 4 HOH A 78 578 53 HOH HOH . 
D 4 HOH A 79 579 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE SEY . . . B 2 -5.376 50.208 72.72 0.73 51.99 ? SE SEY 401 A 1 
HETATM 2 C C SEY . . . B 2 -5.233 49.147 74.261 0.73 42.08 ? C SEY 401 A 1 
HETATM 3 N N2 SEY . . . B 2 -5.433 47.849 74.184 0.73 39.35 ? N2 SEY 401 A 1 
HETATM 4 N N1 SEY . . . B 2 -4.933 49.704 75.424 0.73 39.02 ? N1 SEY 401 A 1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
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