data_5T3J # _model_server_result.job_id gGEE1QTisu4f8zv0ePDCEQ _model_server_result.datetime_utc '2024-11-25 04:52:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5T3J # _exptl.entry_id 5T3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T3J _cell.length_a 119.635 _cell.length_b 119.635 _cell.length_c 92.906 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 59.8175 103.606949 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5T3J _atom_sites.fract_transf_matrix[1][1] 0.008359 _atom_sites.fract_transf_matrix[1][2] 0.004826 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SEY A 1 401 1 SEY SEU . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 8 HOH HOH . D 4 HOH A 2 502 21 HOH HOH . D 4 HOH A 3 503 28 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 66 HOH HOH . D 4 HOH A 6 506 43 HOH HOH . D 4 HOH A 7 507 5 HOH HOH . D 4 HOH A 8 508 42 HOH HOH . D 4 HOH A 9 509 23 HOH HOH . D 4 HOH A 10 510 38 HOH HOH . D 4 HOH A 11 511 44 HOH HOH . D 4 HOH A 12 512 69 HOH HOH . D 4 HOH A 13 513 48 HOH HOH . D 4 HOH A 14 514 10 HOH HOH . D 4 HOH A 15 515 2 HOH HOH . D 4 HOH A 16 516 65 HOH HOH . D 4 HOH A 17 517 19 HOH HOH . D 4 HOH A 18 518 18 HOH HOH . D 4 HOH A 19 519 16 HOH HOH . D 4 HOH A 20 520 39 HOH HOH . D 4 HOH A 21 521 29 HOH HOH . D 4 HOH A 22 522 15 HOH HOH . D 4 HOH A 23 523 30 HOH HOH . D 4 HOH A 24 524 51 HOH HOH . D 4 HOH A 25 525 31 HOH HOH . D 4 HOH A 26 526 75 HOH HOH . D 4 HOH A 27 527 54 HOH HOH . D 4 HOH A 28 528 45 HOH HOH . D 4 HOH A 29 529 36 HOH HOH . D 4 HOH A 30 530 25 HOH HOH . D 4 HOH A 31 531 9 HOH HOH . D 4 HOH A 32 532 37 HOH HOH . D 4 HOH A 33 533 26 HOH HOH . D 4 HOH A 34 534 3 HOH HOH . D 4 HOH A 35 535 57 HOH HOH . D 4 HOH A 36 536 34 HOH HOH . D 4 HOH A 37 537 46 HOH HOH . D 4 HOH A 38 538 14 HOH HOH . D 4 HOH A 39 539 79 HOH HOH . D 4 HOH A 40 540 12 HOH HOH . D 4 HOH A 41 541 33 HOH HOH . D 4 HOH A 42 542 6 HOH HOH . D 4 HOH A 43 543 72 HOH HOH . D 4 HOH A 44 544 17 HOH HOH . D 4 HOH A 45 545 20 HOH HOH . D 4 HOH A 46 546 7 HOH HOH . D 4 HOH A 47 547 41 HOH HOH . D 4 HOH A 48 548 35 HOH HOH . D 4 HOH A 49 549 11 HOH HOH . D 4 HOH A 50 550 74 HOH HOH . D 4 HOH A 51 551 27 HOH HOH . D 4 HOH A 52 552 22 HOH HOH . D 4 HOH A 53 553 47 HOH HOH . D 4 HOH A 54 554 77 HOH HOH . D 4 HOH A 55 555 58 HOH HOH . D 4 HOH A 56 556 59 HOH HOH . D 4 HOH A 57 557 52 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 63 HOH HOH . D 4 HOH A 60 560 50 HOH HOH . D 4 HOH A 61 561 32 HOH HOH . D 4 HOH A 62 562 24 HOH HOH . D 4 HOH A 63 563 71 HOH HOH . D 4 HOH A 64 564 60 HOH HOH . D 4 HOH A 65 565 64 HOH HOH . D 4 HOH A 66 566 68 HOH HOH . D 4 HOH A 67 567 61 HOH HOH . D 4 HOH A 68 568 78 HOH HOH . D 4 HOH A 69 569 40 HOH HOH . D 4 HOH A 70 570 62 HOH HOH . D 4 HOH A 71 571 73 HOH HOH . D 4 HOH A 72 572 76 HOH HOH . D 4 HOH A 73 573 56 HOH HOH . D 4 HOH A 74 574 1 HOH HOH . D 4 HOH A 75 575 13 HOH HOH . D 4 HOH A 76 576 70 HOH HOH . D 4 HOH A 77 577 67 HOH HOH . D 4 HOH A 78 578 53 HOH HOH . D 4 HOH A 79 579 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 18.581 45.718 81.225 0.79 76.91 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . C 3 19.819 46.251 80.538 0.79 74.59 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . C 3 17.369 46.336 80.562 0.79 72.73 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . C 3 18.532 44.209 81.091 0.79 73.88 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . C 3 18.62 46.086 82.691 0.79 71.87 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #