data_5T3L
#
_model_server_result.job_id            N1MKyxFGYgiXsHu14n0WfQ 
_model_server_result.datetime_utc      '2024-11-25 05:14:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5T3L 
#
_exptl.entry_id    5T3L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              123.016 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            selenourea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T3L 
_cell.length_a            24.384 
_cell.length_b            41.479 
_cell.length_c            65.996 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C H4 N2 Se' 
_chem_comp.formula_weight    123.016 
_chem_comp.id                SEY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              selenourea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SE C SEY doub 152 n n 
N2 C SEY sing 153 n n 
C N1 SEY sing 154 n n 
N2 H2 SEY sing 155 n n 
N1 H3 SEY sing 156 n n 
N1 H4 SEY sing 157 n n 
N2 H1 SEY sing 158 n n 
#
_atom_sites.entry_id                     5T3L 
_atom_sites.fract_transf_matrix[1][1]    0.04101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024109 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SEY B 1 101 101 SEY SEY . 
D 2 SEY B 1 102 102 SEY SEY . 
E 3 HOH A 1 101 101 HOH HOH . 
E 3 HOH A 2 102 102 HOH HOH . 
E 3 HOH A 3 103 103 HOH HOH . 
E 3 HOH A 4 104 104 HOH HOH . 
E 3 HOH A 5 105 105 HOH HOH . 
E 3 HOH A 6 106 106 HOH HOH . 
E 3 HOH A 7 107 107 HOH HOH . 
E 3 HOH A 8 108 108 HOH HOH . 
E 3 HOH A 9 109 109 HOH HOH . 
E 3 HOH A 10 110 110 HOH HOH . 
E 3 HOH A 11 111 111 HOH HOH . 
E 3 HOH A 12 112 112 HOH HOH . 
E 3 HOH A 13 113 113 HOH HOH . 
E 3 HOH A 14 114 114 HOH HOH . 
E 3 HOH A 15 115 115 HOH HOH . 
E 3 HOH A 16 116 116 HOH HOH . 
E 3 HOH A 17 117 117 HOH HOH . 
E 3 HOH A 18 118 118 HOH HOH . 
E 3 HOH A 19 119 119 HOH HOH . 
E 3 HOH A 20 120 120 HOH HOH . 
E 3 HOH A 21 121 121 HOH HOH . 
E 3 HOH A 22 122 122 HOH HOH . 
E 3 HOH A 23 123 123 HOH HOH . 
E 3 HOH A 24 124 124 HOH HOH . 
E 3 HOH A 25 125 125 HOH HOH . 
E 3 HOH A 26 126 126 HOH HOH . 
E 3 HOH A 27 127 127 HOH HOH . 
E 3 HOH A 28 128 128 HOH HOH . 
E 3 HOH A 29 129 129 HOH HOH . 
E 3 HOH A 30 130 130 HOH HOH . 
E 3 HOH A 31 131 131 HOH HOH . 
E 3 HOH A 32 132 132 HOH HOH . 
E 3 HOH A 33 133 133 HOH HOH . 
E 3 HOH A 34 134 134 HOH HOH . 
E 3 HOH A 35 135 135 HOH HOH . 
E 3 HOH A 36 136 136 HOH HOH . 
E 3 HOH A 37 137 137 HOH HOH . 
E 3 HOH A 38 138 138 HOH HOH . 
E 3 HOH A 39 139 139 HOH HOH . 
E 3 HOH A 40 140 140 HOH HOH . 
E 3 HOH A 41 141 141 HOH HOH . 
E 3 HOH A 42 142 142 HOH HOH . 
E 3 HOH A 43 143 143 HOH HOH . 
E 3 HOH A 44 144 144 HOH HOH . 
E 3 HOH A 45 145 145 HOH HOH . 
E 3 HOH A 46 146 146 HOH HOH . 
E 3 HOH A 47 147 147 HOH HOH . 
E 3 HOH A 48 148 148 HOH HOH . 
E 3 HOH A 49 149 149 HOH HOH . 
E 3 HOH A 50 150 150 HOH HOH . 
E 3 HOH A 51 151 151 HOH HOH . 
E 3 HOH A 52 152 152 HOH HOH . 
E 3 HOH A 53 153 153 HOH HOH . 
E 3 HOH A 54 154 154 HOH HOH . 
E 3 HOH A 55 155 155 HOH HOH . 
F 3 HOH B 1 201 201 HOH HOH . 
F 3 HOH B 2 202 202 HOH HOH . 
F 3 HOH B 3 203 203 HOH HOH . 
F 3 HOH B 4 204 204 HOH HOH . 
F 3 HOH B 5 205 205 HOH HOH . 
F 3 HOH B 6 206 206 HOH HOH . 
F 3 HOH B 7 207 207 HOH HOH . 
F 3 HOH B 8 208 208 HOH HOH . 
F 3 HOH B 9 209 209 HOH HOH . 
F 3 HOH B 10 210 210 HOH HOH . 
F 3 HOH B 11 211 211 HOH HOH . 
F 3 HOH B 12 212 212 HOH HOH . 
F 3 HOH B 13 213 213 HOH HOH . 
F 3 HOH B 14 214 214 HOH HOH . 
F 3 HOH B 15 215 215 HOH HOH . 
F 3 HOH B 16 216 216 HOH HOH . 
F 3 HOH B 17 217 217 HOH HOH . 
F 3 HOH B 18 218 218 HOH HOH . 
F 3 HOH B 19 219 219 HOH HOH . 
F 3 HOH B 20 220 220 HOH HOH . 
F 3 HOH B 21 221 221 HOH HOH . 
F 3 HOH B 22 222 222 HOH HOH . 
F 3 HOH B 23 223 223 HOH HOH . 
F 3 HOH B 24 224 224 HOH HOH . 
F 3 HOH B 25 225 225 HOH HOH . 
F 3 HOH B 26 226 226 HOH HOH . 
F 3 HOH B 27 227 227 HOH HOH . 
F 3 HOH B 28 228 228 HOH HOH . 
F 3 HOH B 29 229 229 HOH HOH . 
F 3 HOH B 30 230 230 HOH HOH . 
F 3 HOH B 31 231 231 HOH HOH . 
F 3 HOH B 32 232 232 HOH HOH . 
F 3 HOH B 33 233 233 HOH HOH . 
F 3 HOH B 34 234 234 HOH HOH . 
F 3 HOH B 35 235 235 HOH HOH . 
F 3 HOH B 36 236 236 HOH HOH . 
F 3 HOH B 37 237 237 HOH HOH . 
F 3 HOH B 38 238 238 HOH HOH . 
F 3 HOH B 39 239 239 HOH HOH . 
F 3 HOH B 40 240 240 HOH HOH . 
F 3 HOH B 41 241 241 HOH HOH . 
F 3 HOH B 42 242 242 HOH HOH . 
F 3 HOH B 43 243 243 HOH HOH . 
F 3 HOH B 44 244 244 HOH HOH . 
F 3 HOH B 45 245 256 HOH HOH . 
F 3 HOH B 46 246 245 HOH HOH . 
F 3 HOH B 47 247 246 HOH HOH . 
F 3 HOH B 48 248 247 HOH HOH . 
F 3 HOH B 49 249 248 HOH HOH . 
F 3 HOH B 50 250 249 HOH HOH . 
F 3 HOH B 51 251 250 HOH HOH . 
F 3 HOH B 52 252 251 HOH HOH . 
F 3 HOH B 53 253 252 HOH HOH . 
F 3 HOH B 54 254 253 HOH HOH . 
F 3 HOH B 55 255 254 HOH HOH . 
F 3 HOH B 56 256 255 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 SE SE SEY . . . D 2 13.814 4.706 18.148 0.55 27.57 ? SE SEY 102 B 1 
HETATM 2 C C SEY . . . D 2 13.687 3.595 16.637 0.55 17.18 ? C SEY 102 B 1 
HETATM 3 N N2 SEY . . . D 2 12.703 2.777 16.537 0.55 21.15 ? N2 SEY 102 B 1 
HETATM 4 N N1 SEY . . . D 2 14.587 3.672 15.654 0.55 8.24 ? N1 SEY 102 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#