data_5T3P # _model_server_result.job_id K3FPFfX1_oLC_J74V4Nbrw _model_server_result.datetime_utc '2024-11-22 18:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5T3P # _exptl.entry_id 5T3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T3P _cell.length_a 113.73 _cell.length_b 113.73 _cell.length_c 108.2 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5T3P _atom_sites.fract_transf_matrix[1][1] 0.008793 _atom_sites.fract_transf_matrix[1][2] 0.005076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO A 1 301 1 EDO EDO . E 2 EDO A 1 302 3 EDO EDO . F 2 EDO A 1 303 7 EDO EDO . G 2 EDO A 1 304 8 EDO EDO . H 2 EDO B 1 301 4 EDO EDO . I 2 EDO B 1 302 5 EDO EDO . J 2 EDO B 1 303 6 EDO EDO . K 2 EDO C 1 301 2 EDO EDO . L 2 EDO C 1 302 9 EDO EDO . M 2 EDO C 1 303 10 EDO EDO . N 3 HOH A 1 401 235 HOH HOH . N 3 HOH A 2 402 290 HOH HOH . N 3 HOH A 3 403 56 HOH HOH . N 3 HOH A 4 404 178 HOH HOH . N 3 HOH A 5 405 160 HOH HOH . N 3 HOH A 6 406 337 HOH HOH . N 3 HOH A 7 407 140 HOH HOH . N 3 HOH A 8 408 24 HOH HOH . N 3 HOH A 9 409 117 HOH HOH . N 3 HOH A 10 410 310 HOH HOH . N 3 HOH A 11 411 122 HOH HOH . N 3 HOH A 12 412 126 HOH HOH . N 3 HOH A 13 413 66 HOH HOH . N 3 HOH A 14 414 162 HOH HOH . N 3 HOH A 15 415 18 HOH HOH . N 3 HOH A 16 416 183 HOH HOH . N 3 HOH A 17 417 30 HOH HOH . N 3 HOH A 18 418 170 HOH HOH . N 3 HOH A 19 419 15 HOH HOH . N 3 HOH A 20 420 90 HOH HOH . N 3 HOH A 21 421 214 HOH HOH . N 3 HOH A 22 422 106 HOH HOH . N 3 HOH A 23 423 134 HOH HOH . N 3 HOH A 24 424 241 HOH HOH . N 3 HOH A 25 425 233 HOH HOH . N 3 HOH A 26 426 157 HOH HOH . N 3 HOH A 27 427 224 HOH HOH . N 3 HOH A 28 428 216 HOH HOH . N 3 HOH A 29 429 53 HOH HOH . N 3 HOH A 30 430 277 HOH HOH . N 3 HOH A 31 431 48 HOH HOH . N 3 HOH A 32 432 180 HOH HOH . N 3 HOH A 33 433 135 HOH HOH . N 3 HOH A 34 434 64 HOH HOH . N 3 HOH A 35 435 77 HOH HOH . N 3 HOH A 36 436 76 HOH HOH . N 3 HOH A 37 437 69 HOH HOH . N 3 HOH A 38 438 203 HOH HOH . N 3 HOH A 39 439 144 HOH HOH . N 3 HOH A 40 440 221 HOH HOH . N 3 HOH A 41 441 316 HOH HOH . N 3 HOH A 42 442 84 HOH HOH . N 3 HOH A 43 443 51 HOH HOH . N 3 HOH A 44 444 208 HOH HOH . N 3 HOH A 45 445 71 HOH HOH . N 3 HOH A 46 446 83 HOH HOH . N 3 HOH A 47 447 124 HOH HOH . N 3 HOH A 48 448 49 HOH HOH . N 3 HOH A 49 449 169 HOH HOH . N 3 HOH A 50 450 61 HOH HOH . N 3 HOH A 51 451 55 HOH HOH . N 3 HOH A 52 452 138 HOH HOH . N 3 HOH A 53 453 145 HOH HOH . N 3 HOH A 54 454 234 HOH HOH . N 3 HOH A 55 455 59 HOH HOH . N 3 HOH A 56 456 116 HOH HOH . N 3 HOH A 57 457 159 HOH HOH . N 3 HOH A 58 458 81 HOH HOH . N 3 HOH A 59 459 305 HOH HOH . N 3 HOH A 60 460 125 HOH HOH . N 3 HOH A 61 461 300 HOH HOH . N 3 HOH A 62 462 68 HOH HOH . N 3 HOH A 63 463 44 HOH HOH . N 3 HOH A 64 464 153 HOH HOH . N 3 HOH A 65 465 195 HOH HOH . N 3 HOH A 66 466 301 HOH HOH . N 3 HOH A 67 467 78 HOH HOH . N 3 HOH A 68 468 285 HOH HOH . N 3 HOH A 69 469 25 HOH HOH . N 3 HOH A 70 470 37 HOH HOH . N 3 HOH A 71 471 249 HOH HOH . N 3 HOH A 72 472 215 HOH HOH . N 3 HOH A 73 473 181 HOH HOH . N 3 HOH A 74 474 201 HOH HOH . N 3 HOH A 75 475 213 HOH HOH . N 3 HOH A 76 476 36 HOH HOH . N 3 HOH A 77 477 103 HOH HOH . N 3 HOH A 78 478 202 HOH HOH . N 3 HOH A 79 479 317 HOH HOH . N 3 HOH A 80 480 7 HOH HOH . N 3 HOH A 81 481 79 HOH HOH . N 3 HOH A 82 482 262 HOH HOH . N 3 HOH A 83 483 276 HOH HOH . N 3 HOH A 84 484 226 HOH HOH . N 3 HOH A 85 485 198 HOH HOH . N 3 HOH A 86 486 46 HOH HOH . N 3 HOH A 87 487 336 HOH HOH . N 3 HOH A 88 488 133 HOH HOH . N 3 HOH A 89 489 80 HOH HOH . N 3 HOH A 90 490 261 HOH HOH . N 3 HOH A 91 491 174 HOH HOH . N 3 HOH A 92 492 252 HOH HOH . N 3 HOH A 93 493 114 HOH HOH . N 3 HOH A 94 494 309 HOH HOH . N 3 HOH A 95 495 255 HOH HOH . N 3 HOH A 96 496 272 HOH HOH . N 3 HOH A 97 497 99 HOH HOH . N 3 HOH A 98 498 335 HOH HOH . N 3 HOH A 99 499 232 HOH HOH . N 3 HOH A 100 500 158 HOH HOH . N 3 HOH A 101 501 282 HOH HOH . N 3 HOH A 102 502 222 HOH HOH . O 3 HOH B 1 401 155 HOH HOH . O 3 HOH B 2 402 218 HOH HOH . O 3 HOH B 3 403 219 HOH HOH . O 3 HOH B 4 404 97 HOH HOH . O 3 HOH B 5 405 323 HOH HOH . O 3 HOH B 6 406 322 HOH HOH . O 3 HOH B 7 407 147 HOH HOH . O 3 HOH B 8 408 293 HOH HOH . O 3 HOH B 9 409 92 HOH HOH . O 3 HOH B 10 410 228 HOH HOH . O 3 HOH B 11 411 33 HOH HOH . O 3 HOH B 12 412 242 HOH HOH . O 3 HOH B 13 413 45 HOH HOH . O 3 HOH B 14 414 139 HOH HOH . O 3 HOH B 15 415 108 HOH HOH . O 3 HOH B 16 416 118 HOH HOH . O 3 HOH B 17 417 324 HOH HOH . O 3 HOH B 18 418 88 HOH HOH . O 3 HOH B 19 419 62 HOH HOH . O 3 HOH B 20 420 13 HOH HOH . O 3 HOH B 21 421 152 HOH HOH . O 3 HOH B 22 422 74 HOH HOH . O 3 HOH B 23 423 236 HOH HOH . O 3 HOH B 24 424 42 HOH HOH . O 3 HOH B 25 425 6 HOH HOH . O 3 HOH B 26 426 5 HOH HOH . O 3 HOH B 27 427 41 HOH HOH . O 3 HOH B 28 428 65 HOH HOH . O 3 HOH B 29 429 205 HOH HOH . O 3 HOH B 30 430 151 HOH HOH . O 3 HOH B 31 431 186 HOH HOH . O 3 HOH B 32 432 280 HOH HOH . O 3 HOH B 33 433 223 HOH HOH . O 3 HOH B 34 434 217 HOH HOH . O 3 HOH B 35 435 115 HOH HOH . O 3 HOH B 36 436 299 HOH HOH . O 3 HOH B 37 437 54 HOH HOH . O 3 HOH B 38 438 26 HOH HOH . O 3 HOH B 39 439 67 HOH HOH . O 3 HOH B 40 440 161 HOH HOH . O 3 HOH B 41 441 137 HOH HOH . O 3 HOH B 42 442 238 HOH HOH . O 3 HOH B 43 443 89 HOH HOH . O 3 HOH B 44 444 196 HOH HOH . O 3 HOH B 45 445 206 HOH HOH . O 3 HOH B 46 446 308 HOH HOH . O 3 HOH B 47 447 105 HOH HOH . O 3 HOH B 48 448 197 HOH HOH . O 3 HOH B 49 449 72 HOH HOH . O 3 HOH B 50 450 248 HOH HOH . O 3 HOH B 51 451 60 HOH HOH . O 3 HOH B 52 452 166 HOH HOH . O 3 HOH B 53 453 211 HOH HOH . O 3 HOH B 54 454 268 HOH HOH . O 3 HOH B 55 455 3 HOH HOH . O 3 HOH B 56 456 22 HOH HOH . O 3 HOH B 57 457 332 HOH HOH . O 3 HOH B 58 458 251 HOH HOH . O 3 HOH B 59 459 35 HOH HOH . O 3 HOH B 60 460 20 HOH HOH . O 3 HOH B 61 461 47 HOH HOH . O 3 HOH B 62 462 34 HOH HOH . O 3 HOH B 63 463 131 HOH HOH . O 3 HOH B 64 464 148 HOH HOH . O 3 HOH B 65 465 187 HOH HOH . O 3 HOH B 66 466 264 HOH HOH . O 3 HOH B 67 467 167 HOH HOH . O 3 HOH B 68 468 12 HOH HOH . O 3 HOH B 69 469 29 HOH HOH . O 3 HOH B 70 470 82 HOH HOH . O 3 HOH B 71 471 31 HOH HOH . O 3 HOH B 72 472 102 HOH HOH . O 3 HOH B 73 473 58 HOH HOH . O 3 HOH B 74 474 312 HOH HOH . O 3 HOH B 75 475 177 HOH HOH . O 3 HOH B 76 476 182 HOH HOH . O 3 HOH B 77 477 302 HOH HOH . O 3 HOH B 78 478 267 HOH HOH . O 3 HOH B 79 479 314 HOH HOH . O 3 HOH B 80 480 225 HOH HOH . O 3 HOH B 81 481 168 HOH HOH . O 3 HOH B 82 482 190 HOH HOH . O 3 HOH B 83 483 250 HOH HOH . O 3 HOH B 84 484 9 HOH HOH . O 3 HOH B 85 485 156 HOH HOH . O 3 HOH B 86 486 209 HOH HOH . O 3 HOH B 87 487 284 HOH HOH . O 3 HOH B 88 488 176 HOH HOH . O 3 HOH B 89 489 107 HOH HOH . O 3 HOH B 90 490 43 HOH HOH . O 3 HOH B 91 491 111 HOH HOH . O 3 HOH B 92 492 311 HOH HOH . O 3 HOH B 93 493 270 HOH HOH . O 3 HOH B 94 494 269 HOH HOH . O 3 HOH B 95 495 184 HOH HOH . O 3 HOH B 96 496 104 HOH HOH . O 3 HOH B 97 497 260 HOH HOH . O 3 HOH B 98 498 271 HOH HOH . O 3 HOH B 99 499 101 HOH HOH . O 3 HOH B 100 500 100 HOH HOH . O 3 HOH B 101 501 325 HOH HOH . O 3 HOH B 102 502 96 HOH HOH . O 3 HOH B 103 503 320 HOH HOH . O 3 HOH B 104 504 94 HOH HOH . O 3 HOH B 105 505 231 HOH HOH . O 3 HOH B 106 506 191 HOH HOH . O 3 HOH B 107 507 313 HOH HOH . O 3 HOH B 108 508 173 HOH HOH . O 3 HOH B 109 509 321 HOH HOH . O 3 HOH B 110 510 279 HOH HOH . O 3 HOH B 111 511 194 HOH HOH . O 3 HOH B 112 512 278 HOH HOH . O 3 HOH B 113 513 294 HOH HOH . P 3 HOH C 1 401 212 HOH HOH . P 3 HOH C 2 402 136 HOH HOH . P 3 HOH C 3 403 164 HOH HOH . P 3 HOH C 4 404 230 HOH HOH . P 3 HOH C 5 405 75 HOH HOH . P 3 HOH C 6 406 11 HOH HOH . P 3 HOH C 7 407 306 HOH HOH . P 3 HOH C 8 408 141 HOH HOH . P 3 HOH C 9 409 73 HOH HOH . P 3 HOH C 10 410 38 HOH HOH . P 3 HOH C 11 411 146 HOH HOH . P 3 HOH C 12 412 229 HOH HOH . P 3 HOH C 13 413 189 HOH HOH . P 3 HOH C 14 414 237 HOH HOH . P 3 HOH C 15 415 296 HOH HOH . P 3 HOH C 16 416 16 HOH HOH . P 3 HOH C 17 417 154 HOH HOH . P 3 HOH C 18 418 28 HOH HOH . P 3 HOH C 19 419 210 HOH HOH . P 3 HOH C 20 420 52 HOH HOH . P 3 HOH C 21 421 8 HOH HOH . P 3 HOH C 22 422 85 HOH HOH . P 3 HOH C 23 423 330 HOH HOH . P 3 HOH C 24 424 2 HOH HOH . P 3 HOH C 25 425 32 HOH HOH . P 3 HOH C 26 426 19 HOH HOH . P 3 HOH C 27 427 239 HOH HOH . P 3 HOH C 28 428 91 HOH HOH . P 3 HOH C 29 429 112 HOH HOH . P 3 HOH C 30 430 130 HOH HOH . P 3 HOH C 31 431 149 HOH HOH . P 3 HOH C 32 432 87 HOH HOH . P 3 HOH C 33 433 328 HOH HOH . P 3 HOH C 34 434 27 HOH HOH . P 3 HOH C 35 435 123 HOH HOH . P 3 HOH C 36 436 21 HOH HOH . P 3 HOH C 37 437 286 HOH HOH . P 3 HOH C 38 438 227 HOH HOH . P 3 HOH C 39 439 4 HOH HOH . P 3 HOH C 40 440 163 HOH HOH . P 3 HOH C 41 441 258 HOH HOH . P 3 HOH C 42 442 93 HOH HOH . P 3 HOH C 43 443 127 HOH HOH . P 3 HOH C 44 444 70 HOH HOH . P 3 HOH C 45 445 150 HOH HOH . P 3 HOH C 46 446 57 HOH HOH . P 3 HOH C 47 447 175 HOH HOH . P 3 HOH C 48 448 14 HOH HOH . P 3 HOH C 49 449 40 HOH HOH . P 3 HOH C 50 450 266 HOH HOH . P 3 HOH C 51 451 165 HOH HOH . P 3 HOH C 52 452 192 HOH HOH . P 3 HOH C 53 453 246 HOH HOH . P 3 HOH C 54 454 199 HOH HOH . P 3 HOH C 55 455 50 HOH HOH . P 3 HOH C 56 456 17 HOH HOH . P 3 HOH C 57 457 185 HOH HOH . P 3 HOH C 58 458 307 HOH HOH . P 3 HOH C 59 459 327 HOH HOH . P 3 HOH C 60 460 10 HOH HOH . P 3 HOH C 61 461 188 HOH HOH . P 3 HOH C 62 462 129 HOH HOH . P 3 HOH C 63 463 119 HOH HOH . P 3 HOH C 64 464 207 HOH HOH . P 3 HOH C 65 465 274 HOH HOH . P 3 HOH C 66 466 244 HOH HOH . P 3 HOH C 67 467 109 HOH HOH . P 3 HOH C 68 468 200 HOH HOH . P 3 HOH C 69 469 319 HOH HOH . P 3 HOH C 70 470 179 HOH HOH . P 3 HOH C 71 471 120 HOH HOH . P 3 HOH C 72 472 326 HOH HOH . P 3 HOH C 73 473 95 HOH HOH . P 3 HOH C 74 474 63 HOH HOH . P 3 HOH C 75 475 220 HOH HOH . P 3 HOH C 76 476 1 HOH HOH . P 3 HOH C 77 477 113 HOH HOH . P 3 HOH C 78 478 193 HOH HOH . P 3 HOH C 79 479 331 HOH HOH . P 3 HOH C 80 480 297 HOH HOH . P 3 HOH C 81 481 318 HOH HOH . P 3 HOH C 82 482 288 HOH HOH . P 3 HOH C 83 483 263 HOH HOH . P 3 HOH C 84 484 172 HOH HOH . P 3 HOH C 85 485 245 HOH HOH . P 3 HOH C 86 486 142 HOH HOH . P 3 HOH C 87 487 171 HOH HOH . P 3 HOH C 88 488 128 HOH HOH . P 3 HOH C 89 489 334 HOH HOH . P 3 HOH C 90 490 204 HOH HOH . P 3 HOH C 91 491 110 HOH HOH . P 3 HOH C 92 492 132 HOH HOH . P 3 HOH C 93 493 240 HOH HOH . P 3 HOH C 94 494 333 HOH HOH . P 3 HOH C 95 495 329 HOH HOH . P 3 HOH C 96 496 338 HOH HOH . P 3 HOH C 97 497 259 HOH HOH . P 3 HOH C 98 498 303 HOH HOH . P 3 HOH C 99 499 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 43.292 66.23 48.124 1 53.2 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . D 2 43.618 67.346 48.947 1 45.32 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . D 2 44.428 65.218 48.211 1 53.85 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . D 2 44.046 64.111 49.016 1 44.94 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #