data_5T47 # _model_server_result.job_id -X-FGNGsIJwczVZT3Hx8MA _model_server_result.datetime_utc '2024-11-19 13:16:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5T47 # _exptl.entry_id 5T47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.7 _cell.angle_beta 103.94 _cell.angle_gamma 116.08 _cell.entry_id 5T47 _cell.length_a 46.295 _cell.length_b 49.714 _cell.length_c 58.627 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H 1 1 C,D,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5T47 _atom_sites.fract_transf_matrix[1][1] 0.021601 _atom_sites.fract_transf_matrix[1][2] 0.010574 _atom_sites.fract_transf_matrix[1][3] 0.010043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022396 _atom_sites.fract_transf_matrix[2][3] 0.009025 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL C 1 301 1 GOL GOL . F 3 GOL C 1 302 2 GOL GOL . G 4 HOH A 1 301 88 HOH HOH . G 4 HOH A 2 302 97 HOH HOH . G 4 HOH A 3 303 143 HOH HOH . G 4 HOH A 4 304 109 HOH HOH . G 4 HOH A 5 305 85 HOH HOH . G 4 HOH A 6 306 16 HOH HOH . G 4 HOH A 7 307 148 HOH HOH . G 4 HOH A 8 308 86 HOH HOH . G 4 HOH A 9 309 28 HOH HOH . G 4 HOH A 10 310 155 HOH HOH . G 4 HOH A 11 311 81 HOH HOH . G 4 HOH A 12 312 87 HOH HOH . G 4 HOH A 13 313 19 HOH HOH . G 4 HOH A 14 314 6 HOH HOH . G 4 HOH A 15 315 64 HOH HOH . G 4 HOH A 16 316 67 HOH HOH . G 4 HOH A 17 317 112 HOH HOH . G 4 HOH A 18 318 122 HOH HOH . G 4 HOH A 19 319 13 HOH HOH . G 4 HOH A 20 320 72 HOH HOH . G 4 HOH A 21 321 18 HOH HOH . G 4 HOH A 22 322 89 HOH HOH . G 4 HOH A 23 323 29 HOH HOH . G 4 HOH A 24 324 60 HOH HOH . G 4 HOH A 25 325 45 HOH HOH . G 4 HOH A 26 326 33 HOH HOH . G 4 HOH A 27 327 32 HOH HOH . G 4 HOH A 28 328 126 HOH HOH . G 4 HOH A 29 329 34 HOH HOH . G 4 HOH A 30 330 63 HOH HOH . G 4 HOH A 31 331 50 HOH HOH . G 4 HOH A 32 332 82 HOH HOH . G 4 HOH A 33 333 80 HOH HOH . G 4 HOH A 34 334 119 HOH HOH . G 4 HOH A 35 335 71 HOH HOH . G 4 HOH A 36 336 66 HOH HOH . G 4 HOH A 37 337 31 HOH HOH . G 4 HOH A 38 338 52 HOH HOH . G 4 HOH A 39 339 35 HOH HOH . G 4 HOH A 40 340 153 HOH HOH . G 4 HOH A 41 341 65 HOH HOH . G 4 HOH A 42 342 49 HOH HOH . G 4 HOH A 43 343 42 HOH HOH . G 4 HOH A 44 344 58 HOH HOH . G 4 HOH A 45 345 56 HOH HOH . G 4 HOH A 46 346 39 HOH HOH . G 4 HOH A 47 347 142 HOH HOH . G 4 HOH A 48 348 77 HOH HOH . G 4 HOH A 49 349 57 HOH HOH . G 4 HOH A 50 350 117 HOH HOH . G 4 HOH A 51 351 76 HOH HOH . G 4 HOH A 52 352 133 HOH HOH . G 4 HOH A 53 353 116 HOH HOH . G 4 HOH A 54 354 136 HOH HOH . G 4 HOH A 55 355 94 HOH HOH . G 4 HOH A 56 356 91 HOH HOH . G 4 HOH A 57 357 123 HOH HOH . G 4 HOH A 58 358 83 HOH HOH . H 4 HOH B 1 701 90 HOH HOH . H 4 HOH B 2 702 84 HOH HOH . H 4 HOH B 3 703 101 HOH HOH . H 4 HOH B 4 704 27 HOH HOH . H 4 HOH B 5 705 121 HOH HOH . H 4 HOH B 6 706 146 HOH HOH . H 4 HOH B 7 707 137 HOH HOH . H 4 HOH B 8 708 157 HOH HOH . H 4 HOH B 9 709 73 HOH HOH . H 4 HOH B 10 710 149 HOH HOH . H 4 HOH B 11 711 41 HOH HOH . H 4 HOH B 12 712 151 HOH HOH . H 4 HOH B 13 713 150 HOH HOH . H 4 HOH B 14 714 95 HOH HOH . H 4 HOH B 15 715 131 HOH HOH . I 4 HOH C 1 401 23 HOH HOH . I 4 HOH C 2 402 62 HOH HOH . I 4 HOH C 3 403 53 HOH HOH . I 4 HOH C 4 404 55 HOH HOH . I 4 HOH C 5 405 68 HOH HOH . I 4 HOH C 6 406 127 HOH HOH . I 4 HOH C 7 407 2 HOH HOH . I 4 HOH C 8 408 100 HOH HOH . I 4 HOH C 9 409 70 HOH HOH . I 4 HOH C 10 410 44 HOH HOH . I 4 HOH C 11 411 37 HOH HOH . I 4 HOH C 12 412 99 HOH HOH . I 4 HOH C 13 413 128 HOH HOH . I 4 HOH C 14 414 74 HOH HOH . I 4 HOH C 15 415 10 HOH HOH . I 4 HOH C 16 416 21 HOH HOH . I 4 HOH C 17 417 1 HOH HOH . I 4 HOH C 18 418 61 HOH HOH . I 4 HOH C 19 419 147 HOH HOH . I 4 HOH C 20 420 3 HOH HOH . I 4 HOH C 21 421 9 HOH HOH . I 4 HOH C 22 422 30 HOH HOH . I 4 HOH C 23 423 145 HOH HOH . I 4 HOH C 24 424 118 HOH HOH . I 4 HOH C 25 425 47 HOH HOH . I 4 HOH C 26 426 7 HOH HOH . I 4 HOH C 27 427 96 HOH HOH . I 4 HOH C 28 428 14 HOH HOH . I 4 HOH C 29 429 43 HOH HOH . I 4 HOH C 30 430 4 HOH HOH . I 4 HOH C 31 431 140 HOH HOH . I 4 HOH C 32 432 98 HOH HOH . I 4 HOH C 33 433 5 HOH HOH . I 4 HOH C 34 434 154 HOH HOH . I 4 HOH C 35 435 110 HOH HOH . I 4 HOH C 36 436 111 HOH HOH . I 4 HOH C 37 437 113 HOH HOH . I 4 HOH C 38 438 54 HOH HOH . I 4 HOH C 39 439 24 HOH HOH . I 4 HOH C 40 440 48 HOH HOH . I 4 HOH C 41 441 46 HOH HOH . I 4 HOH C 42 442 105 HOH HOH . I 4 HOH C 43 443 152 HOH HOH . I 4 HOH C 44 444 78 HOH HOH . I 4 HOH C 45 445 114 HOH HOH . I 4 HOH C 46 446 51 HOH HOH . I 4 HOH C 47 447 59 HOH HOH . I 4 HOH C 48 448 141 HOH HOH . I 4 HOH C 49 449 124 HOH HOH . I 4 HOH C 50 450 92 HOH HOH . I 4 HOH C 51 451 120 HOH HOH . I 4 HOH C 52 452 106 HOH HOH . I 4 HOH C 53 453 11 HOH HOH . I 4 HOH C 54 454 132 HOH HOH . I 4 HOH C 55 455 135 HOH HOH . I 4 HOH C 56 456 108 HOH HOH . I 4 HOH C 57 457 107 HOH HOH . I 4 HOH C 58 458 79 HOH HOH . J 4 HOH D 1 701 115 HOH HOH . J 4 HOH D 2 702 104 HOH HOH . J 4 HOH D 3 703 139 HOH HOH . J 4 HOH D 4 704 125 HOH HOH . J 4 HOH D 5 705 102 HOH HOH . J 4 HOH D 6 706 26 HOH HOH . J 4 HOH D 7 707 75 HOH HOH . J 4 HOH D 8 708 15 HOH HOH . J 4 HOH D 9 709 22 HOH HOH . J 4 HOH D 10 710 134 HOH HOH . J 4 HOH D 11 711 12 HOH HOH . J 4 HOH D 12 712 8 HOH HOH . J 4 HOH D 13 713 17 HOH HOH . J 4 HOH D 14 714 93 HOH HOH . J 4 HOH D 15 715 144 HOH HOH . J 4 HOH D 16 716 138 HOH HOH . J 4 HOH D 17 717 130 HOH HOH . J 4 HOH D 18 718 38 HOH HOH . J 4 HOH D 19 719 69 HOH HOH . J 4 HOH D 20 720 156 HOH HOH . J 4 HOH D 21 721 20 HOH HOH . J 4 HOH D 22 722 25 HOH HOH . J 4 HOH D 23 723 129 HOH HOH . J 4 HOH D 24 724 36 HOH HOH . J 4 HOH D 25 725 40 HOH HOH . J 4 HOH D 26 726 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 16.855 -36.075 23.613 1 66.57 ? C1 GOL 302 C 1 HETATM 2 O O1 GOL . . . F 3 18.147 -35.612 23.294 1 66.53 ? O1 GOL 302 C 1 HETATM 3 C C2 GOL . . . F 3 16.536 -35.736 25.065 1 66.38 ? C2 GOL 302 C 1 HETATM 4 O O2 GOL . . . F 3 15.711 -34.595 25.115 1 65.31 ? O2 GOL 302 C 1 HETATM 5 C C3 GOL . . . F 3 15.854 -36.898 25.78 1 67.29 ? C3 GOL 302 C 1 HETATM 6 O O3 GOL . . . F 3 16.736 -37.461 26.725 1 68.08 ? O3 GOL 302 C 1 HETATM 7 H H11 GOL . . . F 3 16.123 -35.606 22.956 1 79.89 ? H11 GOL 302 C 1 HETATM 8 H H12 GOL . . . F 3 16.803 -37.154 23.466 1 79.89 ? H12 GOL 302 C 1 HETATM 9 H HO1 GOL . . . F 3 18.377 -35.888 22.382 1 79.84 ? HO1 GOL 302 C 1 HETATM 10 H H2 GOL . . . F 3 17.474 -35.525 25.578 1 79.65 ? H2 GOL 302 C 1 HETATM 11 H HO2 GOL . . . F 3 14.852 -34.794 24.685 1 78.38 ? HO2 GOL 302 C 1 HETATM 12 H H31 GOL . . . F 3 14.954 -36.544 26.283 1 80.75 ? H31 GOL 302 C 1 HETATM 13 H H32 GOL . . . F 3 15.561 -37.656 25.054 1 80.75 ? H32 GOL 302 C 1 HETATM 14 H HO3 GOL . . . F 3 16.231 -37.741 27.517 1 81.7 ? HO3 GOL 302 C 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 482 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #