data_5T48
#
_model_server_result.job_id            hJpZ7FSJ1QYnVMGLQaQYTA 
_model_server_result.datetime_utc      '2025-06-28 14:05:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t48 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5T48 
#
_exptl.entry_id    5T48 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.215 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T48 
_cell.length_a            45.622 
_cell.length_b            66.196 
_cell.length_c            75.618 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T48 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H19 N5 O14 P3 1' 
_chem_comp.formula_weight    538.215 
_chem_comp.id                MGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A MGP sing 237 n n 
PA O2A MGP doub 238 n n 
PA O3A MGP sing 239 n n 
PA O5' MGP sing 240 n n 
O3A PB MGP sing 241 n n 
O5' C5' MGP sing 242 n n 
PB O1B MGP sing 243 n n 
PB O2B MGP doub 244 n n 
PB O3B MGP sing 245 n n 
O3B PC MGP sing 246 n n 
PC O1C MGP sing 247 n n 
PC O2C MGP doub 248 n n 
PC O3C MGP sing 249 n n 
C5' C4' MGP sing 250 n n 
C5' H5' MGP sing 251 n n 
C5' "H5'A" MGP sing 252 n n 
C4' O4' MGP sing 253 n n 
C4' C3' MGP sing 254 n n 
C4' H4' MGP sing 255 n n 
O4' C1' MGP sing 256 n n 
C3' O3' MGP sing 257 n n 
C3' C2' MGP sing 258 n n 
C3' H3' MGP sing 259 n n 
O3' HO3' MGP sing 260 n n 
C2' O2' MGP sing 261 n n 
C2' C1' MGP sing 262 n n 
C2' H2' MGP sing 263 n n 
O2' HO2' MGP sing 264 n n 
C1' N9 MGP sing 265 n n 
C1' H1' MGP sing 266 n n 
N9 C8 MGP sing 267 n y 
N9 C4 MGP sing 268 n y 
C8 N7 MGP doub 269 n y 
C8 H8 MGP sing 270 n n 
N7 CM7 MGP sing 271 n n 
N7 C5 MGP sing 272 n y 
CM7 HM7 MGP sing 273 n n 
CM7 HM7A MGP sing 274 n n 
CM7 HM7B MGP sing 275 n n 
C5 C6 MGP sing 276 n n 
C5 C4 MGP doub 277 n y 
C6 O6 MGP doub 278 n n 
C6 N1 MGP sing 279 n n 
N1 C2 MGP sing 280 n n 
N1 HN1 MGP sing 281 n n 
C2 N2 MGP sing 282 n n 
C2 N3 MGP doub 283 n n 
N2 HN2 MGP sing 284 n n 
N2 HN2A MGP sing 285 n n 
N3 C4 MGP sing 286 n n 
O1A H16 MGP sing 287 n n 
O1B H17 MGP sing 288 n n 
O1C H18 MGP sing 289 n n 
O3C H19 MGP sing 290 n n 
#
_atom_sites.entry_id                     5T48 
_atom_sites.fract_transf_matrix[1][1]    0.021919 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015107 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGP A 1 301 1 MGP MGP . 
D 4 HOH A 1 401 26 HOH HOH . 
D 4 HOH A 2 402 19 HOH HOH . 
D 4 HOH A 3 403 12 HOH HOH . 
D 4 HOH A 4 404 30 HOH HOH . 
D 4 HOH A 5 405 15 HOH HOH . 
D 4 HOH A 6 406 17 HOH HOH . 
D 4 HOH A 7 407 34 HOH HOH . 
D 4 HOH A 8 408 11 HOH HOH . 
D 4 HOH A 9 409 21 HOH HOH . 
D 4 HOH A 10 410 6 HOH HOH . 
D 4 HOH A 11 411 4 HOH HOH . 
D 4 HOH A 12 412 5 HOH HOH . 
D 4 HOH A 13 413 2 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 10 HOH HOH . 
D 4 HOH A 16 416 8 HOH HOH . 
D 4 HOH A 17 417 23 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 22 HOH HOH . 
D 4 HOH A 20 420 7 HOH HOH . 
D 4 HOH A 21 421 20 HOH HOH . 
D 4 HOH A 22 422 1 HOH HOH . 
D 4 HOH A 23 423 32 HOH HOH . 
D 4 HOH A 24 424 35 HOH HOH . 
D 4 HOH A 25 425 31 HOH HOH . 
D 4 HOH A 26 426 33 HOH HOH . 
D 4 HOH A 27 427 25 HOH HOH . 
D 4 HOH A 28 428 16 HOH HOH . 
D 4 HOH A 29 429 24 HOH HOH . 
E 4 HOH B 1 701 13 HOH HOH . 
E 4 HOH B 2 702 3 HOH HOH . 
E 4 HOH B 3 703 9 HOH HOH . 
E 4 HOH B 4 704 27 HOH HOH . 
E 4 HOH B 5 705 28 HOH HOH . 
E 4 HOH B 6 706 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA MGP . . . C 3 -3.47 -3.293 12.866 1 83.02 ? PA MGP 301 A 1 
HETATM 2 O O1A MGP . . . C 3 -2.74 -4.08 13.944 1 86.06 -1 O1A MGP 301 A 1 
HETATM 3 O O2A MGP . . . C 3 -4.44 -4.182 12.19 1 78.15 ? O2A MGP 301 A 1 
HETATM 4 O O3A MGP . . . C 3 -4.235 -2.081 13.56 1 97.33 ? O3A MGP 301 A 1 
HETATM 5 O O5' MGP . . . C 3 -2.361 -2.651 11.887 1 78.21 ? O5' MGP 301 A 1 
HETATM 6 P PB MGP . . . C 3 -4.635 -0.625 13.055 1 112.91 ? PB MGP 301 A 1 
HETATM 7 O O1B MGP . . . C 3 -3.424 0.292 13.174 1 111.38 -1 O1B MGP 301 A 1 
HETATM 8 O O2B MGP . . . C 3 -5.753 -0.088 13.862 1 113.49 ? O2B MGP 301 A 1 
HETATM 9 O O3B MGP . . . C 3 -5.059 -0.707 11.523 1 133.78 ? O3B MGP 301 A 1 
HETATM 10 P PC MGP . . . C 3 -5.54 0.41 10.496 1 153.17 ? PC MGP 301 A 1 
HETATM 11 O O1C MGP . . . C 3 -4.555 1.569 10.63 1 160.22 -1 O1C MGP 301 A 1 
HETATM 12 O O2C MGP . . . C 3 -5.589 -0.152 9.12 1 156.38 ? O2C MGP 301 A 1 
HETATM 13 O O3C MGP . . . C 3 -6.903 0.891 10.989 1 159.97 -1 O3C MGP 301 A 1 
HETATM 14 C C5' MGP . . . C 3 -2.417 -2.862 10.463 1 71.47 ? C5' MGP 301 A 1 
HETATM 15 C C4' MGP . . . C 3 -1.011 -2.929 9.921 1 67.09 ? C4' MGP 301 A 1 
HETATM 16 O O4' MGP . . . C 3 -0.221 -3.817 10.743 1 61.11 ? O4' MGP 301 A 1 
HETATM 17 C C3' MGP . . . C 3 -0.912 -3.462 8.494 1 64.29 ? C3' MGP 301 A 1 
HETATM 18 O O3' MGP . . . C 3 -0.866 -2.375 7.578 1 68.96 ? O3' MGP 301 A 1 
HETATM 19 C C2' MGP . . . C 3 0.397 -4.256 8.51 1 61.8 ? C2' MGP 301 A 1 
HETATM 20 O O2' MGP . . . C 3 1.528 -3.426 8.273 1 61.99 ? O2' MGP 301 A 1 
HETATM 21 C C1' MGP . . . C 3 0.408 -4.795 9.94 1 60.21 ? C1' MGP 301 A 1 
HETATM 22 N N9 MGP . . . C 3 -0.318 -6.066 10.106 1 55.22 ? N9 MGP 301 A 1 
HETATM 23 C C8 MGP . . . C 3 -1.46 -6.212 10.782 1 53.85 ? C8 MGP 301 A 1 
HETATM 24 N N7 MGP . . . C 3 -1.824 -7.48 10.753 1 51.67 1 N7 MGP 301 A 1 
HETATM 25 C CM7 MGP . . . C 3 -3.026 -8.019 11.405 1 47.85 ? CM7 MGP 301 A 1 
HETATM 26 C C5 MGP . . . C 3 -0.888 -8.199 10.025 1 52.38 ? C5 MGP 301 A 1 
HETATM 27 C C6 MGP . . . C 3 -0.77 -9.573 9.665 1 56.71 ? C6 MGP 301 A 1 
HETATM 28 O O6 MGP . . . C 3 -1.527 -10.504 9.934 1 54.9 ? O6 MGP 301 A 1 
HETATM 29 N N1 MGP . . . C 3 0.371 -9.779 8.911 1 61.17 ? N1 MGP 301 A 1 
HETATM 30 C C2 MGP . . . C 3 1.277 -8.819 8.547 1 60.6 ? C2 MGP 301 A 1 
HETATM 31 N N2 MGP . . . C 3 2.323 -9.215 7.822 1 65.27 ? N2 MGP 301 A 1 
HETATM 32 N N3 MGP . . . C 3 1.161 -7.538 8.886 1 56.48 ? N3 MGP 301 A 1 
HETATM 33 C C4 MGP . . . C 3 0.064 -7.292 9.62 1 54.42 ? C4 MGP 301 A 1 
HETATM 34 H H5' MGP . . . C 3 -2.949 -2.009 10.045 1 85.77 ? H5' MGP 301 A 1 
HETATM 35 H "H5'A" MGP . . . C 3 -2.972 -3.763 10.204 1 85.77 ? "H5'A" MGP 301 A 1 
HETATM 36 H H4' MGP . . . C 3 -0.509 -1.97 10.037 1 80.51 ? H4' MGP 301 A 1 
HETATM 37 H H3' MGP . . . C 3 -1.769 -4.09 8.255 1 77.14 ? H3' MGP 301 A 1 
HETATM 38 H HO3' MGP . . . C 3 -1.317 -2.666 6.742 1 82.75 ? HO3' MGP 301 A 1 
HETATM 39 H H2' MGP . . . C 3 0.363 -5.068 7.786 1 74.16 ? H2' MGP 301 A 1 
HETATM 40 H HO2' MGP . . . C 3 2.007 -3.827 7.501 1 74.39 ? HO2' MGP 301 A 1 
HETATM 41 H H1' MGP . . . C 3 1.415 -4.959 10.321 1 72.25 ? H1' MGP 301 A 1 
HETATM 42 H H8 MGP . . . C 3 -2.008 -5.413 11.279 1 64.62 ? H8 MGP 301 A 1 
HETATM 43 H HM7 MGP . . . C 3 -3.864 -7.343 11.24 1 57.42 ? HM7 MGP 301 A 1 
HETATM 44 H HM7A MGP . . . C 3 -3.304 -8.98 10.975 1 57.42 ? HM7A MGP 301 A 1 
HETATM 45 H HM7B MGP . . . C 3 -2.88 -8.156 12.475 1 57.42 ? HM7B MGP 301 A 1 
HETATM 46 H HN1 MGP . . . C 3 0.515 -10.741 8.62 1 73.4 ? HN1 MGP 301 A 1 
HETATM 47 H HN2 MGP . . . C 3 2.479 -10.175 7.532 1 78.32 ? HN2 MGP 301 A 1 
HETATM 48 H HN2A MGP . . . C 3 3.02 -8.537 7.53 1 78.32 ? HN2A MGP 301 A 1 
HETATM 49 H H16 MGP . . . C 3 -3.012 -4.407 14.842 1 85.57 ? H16 MGP 301 A 1 
HETATM 50 H H17 MGP . . . C 3 -3.333 1.025 13.837 1 112 ? H17 MGP 301 A 1 
HETATM 51 H H18 MGP . . . C 3 -4.62 2.325 9.99 1 164.02 ? H18 MGP 301 A 1 
HETATM 52 H H19 MGP . . . C 3 -7.572 1.382 10.443 1 163.51 ? H19 MGP 301 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           52 
#