data_5T4K # _model_server_result.job_id 6801zCASmrYg73Pftajkbw _model_server_result.datetime_utc '2024-11-15 00:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5T4K # _exptl.entry_id 5T4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.279 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-5-fluoro-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T4K _cell.length_a 96.63 _cell.length_b 127.53 _cell.length_c 67.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H20 F N2 O7 P' _chem_comp.formula_weight 366.279 _chem_comp.id 76U _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-5-fluoro-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O P 76U doub 1 n n O2 P 76U sing 2 n n P O1 76U sing 3 n n P O3 76U sing 4 n n O3 C 76U sing 5 n n C2 N 76U doub 6 n y C2 C1 76U sing 7 n y C C1 76U sing 8 n n N C3 76U sing 9 n y C1 C6 76U doub 10 n y C3 C4 76U sing 11 n n C3 C5 76U doub 12 n y C6 C5 76U sing 13 n y C6 C7 76U sing 14 n n C5 O4 76U sing 15 n n C7 N1 76U sing 16 n n N1 C8 76U sing 17 n n C8 C9 76U sing 18 n n C8 C10 76U sing 19 n n C9 F1 76U sing 20 n n C10 C11 76U sing 21 n n C11 C12 76U sing 22 n n O5 C12 76U doub 23 n n C12 O6 76U sing 24 n n C4 H1 76U sing 25 n n C4 H2 76U sing 26 n n C4 H3 76U sing 27 n n C2 H4 76U sing 28 n n O1 H5 76U sing 29 n n O2 H6 76U sing 30 n n C11 H7 76U sing 31 n n C11 H8 76U sing 32 n n C H9 76U sing 33 n n C H10 76U sing 34 n n O4 H11 76U sing 35 n n C7 H12 76U sing 36 n n C7 H13 76U sing 37 n n N1 H14 76U sing 38 n n C8 H16 76U sing 39 n n C9 H17 76U sing 40 n n C9 H18 76U sing 41 n n C10 H19 76U sing 42 n n C10 H20 76U sing 43 n n O6 H21 76U sing 44 n n # _atom_sites.entry_id 5T4K _atom_sites.fract_transf_matrix[1][1] 0.010349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 76U A 1 501 1 76U AIV . C 3 HOH A 1 601 88 HOH HOH . C 3 HOH A 2 602 122 HOH HOH . C 3 HOH A 3 603 40 HOH HOH . C 3 HOH A 4 604 46 HOH HOH . C 3 HOH A 5 605 118 HOH HOH . C 3 HOH A 6 606 28 HOH HOH . C 3 HOH A 7 607 39 HOH HOH . C 3 HOH A 8 608 131 HOH HOH . C 3 HOH A 9 609 139 HOH HOH . C 3 HOH A 10 610 74 HOH HOH . C 3 HOH A 11 611 63 HOH HOH . C 3 HOH A 12 612 120 HOH HOH . C 3 HOH A 13 613 164 HOH HOH . C 3 HOH A 14 614 1 HOH HOH . C 3 HOH A 15 615 77 HOH HOH . C 3 HOH A 16 616 163 HOH HOH . C 3 HOH A 17 617 2 HOH HOH . C 3 HOH A 18 618 12 HOH HOH . C 3 HOH A 19 619 166 HOH HOH . C 3 HOH A 20 620 148 HOH HOH . C 3 HOH A 21 621 4 HOH HOH . C 3 HOH A 22 622 103 HOH HOH . C 3 HOH A 23 623 98 HOH HOH . C 3 HOH A 24 624 65 HOH HOH . C 3 HOH A 25 625 75 HOH HOH . C 3 HOH A 26 626 16 HOH HOH . C 3 HOH A 27 627 9 HOH HOH . C 3 HOH A 28 628 22 HOH HOH . C 3 HOH A 29 629 128 HOH HOH . C 3 HOH A 30 630 15 HOH HOH . C 3 HOH A 31 631 107 HOH HOH . C 3 HOH A 32 632 71 HOH HOH . C 3 HOH A 33 633 17 HOH HOH . C 3 HOH A 34 634 76 HOH HOH . C 3 HOH A 35 635 123 HOH HOH . C 3 HOH A 36 636 5 HOH HOH . C 3 HOH A 37 637 13 HOH HOH . C 3 HOH A 38 638 3 HOH HOH . C 3 HOH A 39 639 100 HOH HOH . C 3 HOH A 40 640 18 HOH HOH . C 3 HOH A 41 641 60 HOH HOH . C 3 HOH A 42 642 6 HOH HOH . C 3 HOH A 43 643 11 HOH HOH . C 3 HOH A 44 644 177 HOH HOH . C 3 HOH A 45 645 32 HOH HOH . C 3 HOH A 46 646 52 HOH HOH . C 3 HOH A 47 647 14 HOH HOH . C 3 HOH A 48 648 80 HOH HOH . C 3 HOH A 49 649 142 HOH HOH . C 3 HOH A 50 650 172 HOH HOH . C 3 HOH A 51 651 153 HOH HOH . C 3 HOH A 52 652 165 HOH HOH . C 3 HOH A 53 653 79 HOH HOH . C 3 HOH A 54 654 26 HOH HOH . C 3 HOH A 55 655 101 HOH HOH . C 3 HOH A 56 656 8 HOH HOH . C 3 HOH A 57 657 102 HOH HOH . C 3 HOH A 58 658 30 HOH HOH . C 3 HOH A 59 659 24 HOH HOH . C 3 HOH A 60 660 170 HOH HOH . C 3 HOH A 61 661 38 HOH HOH . C 3 HOH A 62 662 99 HOH HOH . C 3 HOH A 63 663 31 HOH HOH . C 3 HOH A 64 664 36 HOH HOH . C 3 HOH A 65 665 179 HOH HOH . C 3 HOH A 66 666 178 HOH HOH . C 3 HOH A 67 667 20 HOH HOH . C 3 HOH A 68 668 41 HOH HOH . C 3 HOH A 69 669 90 HOH HOH . C 3 HOH A 70 670 78 HOH HOH . C 3 HOH A 71 671 25 HOH HOH . C 3 HOH A 72 672 86 HOH HOH . C 3 HOH A 73 673 87 HOH HOH . C 3 HOH A 74 674 35 HOH HOH . C 3 HOH A 75 675 21 HOH HOH . C 3 HOH A 76 676 48 HOH HOH . C 3 HOH A 77 677 54 HOH HOH . C 3 HOH A 78 678 29 HOH HOH . C 3 HOH A 79 679 59 HOH HOH . C 3 HOH A 80 680 43 HOH HOH . C 3 HOH A 81 681 68 HOH HOH . C 3 HOH A 82 682 53 HOH HOH . C 3 HOH A 83 683 62 HOH HOH . C 3 HOH A 84 684 7 HOH HOH . C 3 HOH A 85 685 50 HOH HOH . C 3 HOH A 86 686 51 HOH HOH . C 3 HOH A 87 687 121 HOH HOH . C 3 HOH A 88 688 27 HOH HOH . C 3 HOH A 89 689 33 HOH HOH . C 3 HOH A 90 690 69 HOH HOH . C 3 HOH A 91 691 126 HOH HOH . C 3 HOH A 92 692 10 HOH HOH . C 3 HOH A 93 693 37 HOH HOH . C 3 HOH A 94 694 110 HOH HOH . C 3 HOH A 95 695 55 HOH HOH . C 3 HOH A 96 696 180 HOH HOH . C 3 HOH A 97 697 66 HOH HOH . C 3 HOH A 98 698 19 HOH HOH . C 3 HOH A 99 699 70 HOH HOH . C 3 HOH A 100 700 119 HOH HOH . C 3 HOH A 101 701 113 HOH HOH . C 3 HOH A 102 702 57 HOH HOH . C 3 HOH A 103 703 85 HOH HOH . C 3 HOH A 104 704 58 HOH HOH . C 3 HOH A 105 705 45 HOH HOH . C 3 HOH A 106 706 108 HOH HOH . C 3 HOH A 107 707 49 HOH HOH . C 3 HOH A 108 708 91 HOH HOH . C 3 HOH A 109 709 42 HOH HOH . C 3 HOH A 110 710 82 HOH HOH . C 3 HOH A 111 711 92 HOH HOH . C 3 HOH A 112 712 95 HOH HOH . C 3 HOH A 113 713 47 HOH HOH . C 3 HOH A 114 714 133 HOH HOH . C 3 HOH A 115 715 130 HOH HOH . C 3 HOH A 116 716 93 HOH HOH . C 3 HOH A 117 717 137 HOH HOH . C 3 HOH A 118 718 81 HOH HOH . C 3 HOH A 119 719 109 HOH HOH . C 3 HOH A 120 720 127 HOH HOH . C 3 HOH A 121 721 154 HOH HOH . C 3 HOH A 122 722 56 HOH HOH . C 3 HOH A 123 723 94 HOH HOH . C 3 HOH A 124 724 143 HOH HOH . C 3 HOH A 125 725 138 HOH HOH . C 3 HOH A 126 726 61 HOH HOH . C 3 HOH A 127 727 167 HOH HOH . C 3 HOH A 128 728 44 HOH HOH . C 3 HOH A 129 729 141 HOH HOH . C 3 HOH A 130 730 83 HOH HOH . C 3 HOH A 131 731 96 HOH HOH . C 3 HOH A 132 732 23 HOH HOH . C 3 HOH A 133 733 124 HOH HOH . C 3 HOH A 134 734 104 HOH HOH . C 3 HOH A 135 735 158 HOH HOH . C 3 HOH A 136 736 34 HOH HOH . C 3 HOH A 137 737 112 HOH HOH . C 3 HOH A 138 738 97 HOH HOH . C 3 HOH A 139 739 147 HOH HOH . C 3 HOH A 140 740 135 HOH HOH . C 3 HOH A 141 741 64 HOH HOH . C 3 HOH A 142 742 145 HOH HOH . C 3 HOH A 143 743 84 HOH HOH . C 3 HOH A 144 744 149 HOH HOH . C 3 HOH A 145 745 171 HOH HOH . C 3 HOH A 146 746 150 HOH HOH . C 3 HOH A 147 747 117 HOH HOH . C 3 HOH A 148 748 73 HOH HOH . C 3 HOH A 149 749 152 HOH HOH . C 3 HOH A 150 750 169 HOH HOH . C 3 HOH A 151 751 67 HOH HOH . C 3 HOH A 152 752 129 HOH HOH . C 3 HOH A 153 753 89 HOH HOH . C 3 HOH A 154 754 146 HOH HOH . C 3 HOH A 155 755 111 HOH HOH . C 3 HOH A 156 756 144 HOH HOH . C 3 HOH A 157 757 136 HOH HOH . C 3 HOH A 158 758 168 HOH HOH . C 3 HOH A 159 759 174 HOH HOH . C 3 HOH A 160 760 157 HOH HOH . C 3 HOH A 161 761 132 HOH HOH . C 3 HOH A 162 762 106 HOH HOH . C 3 HOH A 163 763 115 HOH HOH . C 3 HOH A 164 764 182 HOH HOH . C 3 HOH A 165 765 134 HOH HOH . C 3 HOH A 166 766 161 HOH HOH . C 3 HOH A 167 767 176 HOH HOH . C 3 HOH A 168 768 151 HOH HOH . C 3 HOH A 169 769 159 HOH HOH . C 3 HOH A 170 770 173 HOH HOH . C 3 HOH A 171 771 160 HOH HOH . C 3 HOH A 172 772 162 HOH HOH . C 3 HOH A 173 773 72 HOH HOH . C 3 HOH A 174 774 140 HOH HOH . C 3 HOH A 175 775 155 HOH HOH . C 3 HOH A 176 776 116 HOH HOH . C 3 HOH A 177 777 105 HOH HOH . C 3 HOH A 178 778 114 HOH HOH . C 3 HOH A 179 779 156 HOH HOH . C 3 HOH A 180 780 125 HOH HOH . C 3 HOH A 181 781 175 HOH HOH . C 3 HOH A 182 782 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 76U . . . B 2 -23.763 -11.1 8.984 1 38.29 ? C1 76U 501 A 1 HETATM 2 C C3 76U . . . B 2 -25.852 -12.504 10.103 1 36.96 ? C3 76U 501 A 1 HETATM 3 C C4 76U . . . B 2 -27.036 -13.312 10.675 1 30.4 ? C4 76U 501 A 1 HETATM 4 C C2 76U . . . B 2 -24.573 -11.907 8.229 1 36.27 ? C2 76U 501 A 1 HETATM 5 C C5 76U . . . B 2 -25.076 -11.708 10.96 1 37.25 ? C5 76U 501 A 1 HETATM 6 C C6 76U . . . B 2 -24.013 -10.991 10.421 1 36.82 ? C6 76U 501 A 1 HETATM 7 O O1 76U . . . B 2 -20.755 -8.333 7.298 1 24.8 ? O1 76U 501 A 1 HETATM 8 O O2 76U . . . B 2 -22.628 -6.935 6.54 1 26.59 ? O2 76U 501 A 1 HETATM 9 C C11 76U . . . B 2 -24.434 -8.953 15.025 1 38.81 ? C11 76U 501 A 1 HETATM 10 C C12 76U . . . B 2 -25.49 -8.312 16.094 1 30.35 ? C12 76U 501 A 1 HETATM 11 O O 76U . . . B 2 -22.132 -9.148 5.479 1 38.69 ? O 76U 501 A 1 HETATM 12 P P 76U . . . B 2 -22.115 -8.381 6.779 1 39.19 ? P 76U 501 A 1 HETATM 13 O O3 76U . . . B 2 -23.041 -9.095 7.807 1 43.84 ? O3 76U 501 A 1 HETATM 14 C C 76U . . . B 2 -22.595 -10.342 8.329 1 41.2 ? C 76U 501 A 1 HETATM 15 N N 76U . . . B 2 -25.576 -12.575 8.779 1 33.81 ? N 76U 501 A 1 HETATM 16 O O4 76U . . . B 2 -25.39 -11.635 12.433 1 36.15 ? O4 76U 501 A 1 HETATM 17 C C7 76U . . . B 2 -23.107 -10.084 11.327 1 40.95 ? C7 76U 501 A 1 HETATM 18 N N1 76U . . . B 2 -23.888 -9.21 12.087 1 43.97 ? N1 76U 501 A 1 HETATM 19 C C8 76U . . . B 2 -23.021 -8.423 12.938 1 42.84 ? C8 76U 501 A 1 HETATM 20 C C9 76U . . . B 2 -21.976 -9.324 13.534 1 35.31 ? C9 76U 501 A 1 HETATM 21 F F1 76U . . . B 2 -20.95 -8.547 14.048 1 38.81 ? F1 76U 501 A 1 HETATM 22 C C10 76U . . . B 2 -23.818 -7.828 14.022 1 43.12 ? C10 76U 501 A 1 HETATM 23 O O5 76U . . . B 2 -26.257 -7.311 15.731 1 29.41 ? O5 76U 501 A 1 HETATM 24 O O6 76U . . . B 2 -25.569 -8.804 17.316 1 28.02 ? O6 76U 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #