data_5T4S
#
_model_server_result.job_id            PdTNdga5ktg9wZQZ2UECcQ 
_model_server_result.datetime_utc      '2025-03-04 08:34:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    5T4S 
#
_exptl.entry_id    5T4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T4S 
_cell.length_a            139.927 
_cell.length_b            139.927 
_cell.length_c            139.927 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 51 1_555 A SG CYS 57 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 216 A CYS 217 1_555 A SG CYS 220 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 258 A CYS 259 1_555 A SG CYS 295 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 B SG CYS 50 B CYS 51 1_555 B SG CYS 57 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 B SG CYS 216 B CYS 217 1_555 B SG CYS 220 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 258 B CYS 259 1_555 B SG CYS 295 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 74 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 B ND2 ASN 74 B ASN 75 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 269 n n 
C1 O1 NAG sing 270 n n 
C1 O5 NAG sing 271 n n 
C1 H1 NAG sing 272 n n 
C2 C3 NAG sing 273 n n 
C2 N2 NAG sing 274 n n 
C2 H2 NAG sing 275 n n 
C3 C4 NAG sing 276 n n 
C3 O3 NAG sing 277 n n 
C3 H3 NAG sing 278 n n 
C4 C5 NAG sing 279 n n 
C4 O4 NAG sing 280 n n 
C4 H4 NAG sing 281 n n 
C5 C6 NAG sing 282 n n 
C5 O5 NAG sing 283 n n 
C5 H5 NAG sing 284 n n 
C6 O6 NAG sing 285 n n 
C6 H61 NAG sing 286 n n 
C6 H62 NAG sing 287 n n 
C7 C8 NAG sing 288 n n 
C7 N2 NAG sing 289 n n 
C7 O7 NAG doub 290 n n 
C8 H81 NAG sing 291 n n 
C8 H82 NAG sing 292 n n 
C8 H83 NAG sing 293 n n 
N2 HN2 NAG sing 294 n n 
O1 HO1 NAG sing 295 n n 
O3 HO3 NAG sing 296 n n 
O4 HO4 NAG sing 297 n n 
O6 HO6 NAG sing 298 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5T4S 
_atom_sites.fract_transf_matrix[1][1]    0.007147 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 400 NAG NAG . 
D 3 PG6 A 1 402 600 PG6 PG6 . 
E 4 DMS A 1 403 700 DMS DMS . 
F 4 DMS A 1 404 701 DMS DMS . 
G 2 NAG B 1 401 410 NAG NAG . 
H 5 77O B 1 402 500 77O LIG . 
I 6 PGE B 1 403 610 PGE PGE . 
J 7 HOH A 1 501 11 HOH HOH . 
J 7 HOH A 2 502 5 HOH HOH . 
J 7 HOH A 3 503 50 HOH HOH . 
J 7 HOH A 4 504 87 HOH HOH . 
J 7 HOH A 5 505 49 HOH HOH . 
J 7 HOH A 6 506 90 HOH HOH . 
J 7 HOH A 7 507 35 HOH HOH . 
J 7 HOH A 8 508 14 HOH HOH . 
J 7 HOH A 9 509 59 HOH HOH . 
J 7 HOH A 10 510 7 HOH HOH . 
J 7 HOH A 11 511 16 HOH HOH . 
J 7 HOH A 12 512 99 HOH HOH . 
J 7 HOH A 13 513 47 HOH HOH . 
J 7 HOH A 14 514 83 HOH HOH . 
J 7 HOH A 15 515 29 HOH HOH . 
J 7 HOH A 16 516 41 HOH HOH . 
J 7 HOH A 17 517 9 HOH HOH . 
J 7 HOH A 18 518 92 HOH HOH . 
J 7 HOH A 19 519 95 HOH HOH . 
J 7 HOH A 20 520 8 HOH HOH . 
J 7 HOH A 21 521 51 HOH HOH . 
J 7 HOH A 22 522 33 HOH HOH . 
J 7 HOH A 23 523 10 HOH HOH . 
J 7 HOH A 24 524 24 HOH HOH . 
J 7 HOH A 25 525 31 HOH HOH . 
J 7 HOH A 26 526 69 HOH HOH . 
J 7 HOH A 27 527 84 HOH HOH . 
J 7 HOH A 28 528 54 HOH HOH . 
J 7 HOH A 29 529 32 HOH HOH . 
J 7 HOH A 30 530 60 HOH HOH . 
J 7 HOH A 31 531 38 HOH HOH . 
J 7 HOH A 32 532 96 HOH HOH . 
J 7 HOH A 33 533 86 HOH HOH . 
J 7 HOH A 34 534 2 HOH HOH . 
J 7 HOH A 35 535 91 HOH HOH . 
J 7 HOH A 36 536 94 HOH HOH . 
J 7 HOH A 37 537 78 HOH HOH . 
J 7 HOH A 38 538 82 HOH HOH . 
J 7 HOH A 39 539 42 HOH HOH . 
J 7 HOH A 40 540 22 HOH HOH . 
J 7 HOH A 41 541 75 HOH HOH . 
J 7 HOH A 42 542 85 HOH HOH . 
J 7 HOH A 43 543 23 HOH HOH . 
J 7 HOH A 44 544 12 HOH HOH . 
J 7 HOH A 45 545 43 HOH HOH . 
J 7 HOH A 46 546 70 HOH HOH . 
J 7 HOH A 47 547 132 HOH HOH . 
J 7 HOH A 48 548 17 HOH HOH . 
J 7 HOH A 49 549 128 HOH HOH . 
J 7 HOH A 50 550 66 HOH HOH . 
J 7 HOH A 51 551 36 HOH HOH . 
J 7 HOH A 52 552 93 HOH HOH . 
J 7 HOH A 53 553 101 HOH HOH . 
J 7 HOH A 54 554 98 HOH HOH . 
J 7 HOH A 55 555 81 HOH HOH . 
J 7 HOH A 56 556 79 HOH HOH . 
J 7 HOH A 57 557 27 HOH HOH . 
J 7 HOH A 58 558 88 HOH HOH . 
J 7 HOH A 59 559 89 HOH HOH . 
J 7 HOH A 60 560 126 HOH HOH . 
J 7 HOH A 61 561 133 HOH HOH . 
J 7 HOH A 62 562 25 HOH HOH . 
J 7 HOH A 63 563 19 HOH HOH . 
J 7 HOH A 64 564 55 HOH HOH . 
J 7 HOH A 65 565 65 HOH HOH . 
J 7 HOH A 66 566 57 HOH HOH . 
J 7 HOH A 67 567 72 HOH HOH . 
J 7 HOH A 68 568 6 HOH HOH . 
J 7 HOH A 69 569 40 HOH HOH . 
J 7 HOH A 70 570 44 HOH HOH . 
J 7 HOH A 71 571 76 HOH HOH . 
J 7 HOH A 72 572 37 HOH HOH . 
J 7 HOH A 73 573 13 HOH HOH . 
J 7 HOH A 74 574 100 HOH HOH . 
J 7 HOH A 75 575 97 HOH HOH . 
J 7 HOH A 76 576 80 HOH HOH . 
K 7 HOH B 1 501 73 HOH HOH . 
K 7 HOH B 2 502 46 HOH HOH . 
K 7 HOH B 3 503 104 HOH HOH . 
K 7 HOH B 4 504 1 HOH HOH . 
K 7 HOH B 5 505 113 HOH HOH . 
K 7 HOH B 6 506 116 HOH HOH . 
K 7 HOH B 7 507 117 HOH HOH . 
K 7 HOH B 8 508 123 HOH HOH . 
K 7 HOH B 9 509 34 HOH HOH . 
K 7 HOH B 10 510 21 HOH HOH . 
K 7 HOH B 11 511 74 HOH HOH . 
K 7 HOH B 12 512 18 HOH HOH . 
K 7 HOH B 13 513 28 HOH HOH . 
K 7 HOH B 14 514 137 HOH HOH . 
K 7 HOH B 15 515 125 HOH HOH . 
K 7 HOH B 16 516 30 HOH HOH . 
K 7 HOH B 17 517 68 HOH HOH . 
K 7 HOH B 18 518 102 HOH HOH . 
K 7 HOH B 19 519 63 HOH HOH . 
K 7 HOH B 20 520 56 HOH HOH . 
K 7 HOH B 21 521 139 HOH HOH . 
K 7 HOH B 22 522 62 HOH HOH . 
K 7 HOH B 23 523 15 HOH HOH . 
K 7 HOH B 24 524 112 HOH HOH . 
K 7 HOH B 25 525 58 HOH HOH . 
K 7 HOH B 26 526 39 HOH HOH . 
K 7 HOH B 27 527 134 HOH HOH . 
K 7 HOH B 28 528 26 HOH HOH . 
K 7 HOH B 29 529 106 HOH HOH . 
K 7 HOH B 30 530 61 HOH HOH . 
K 7 HOH B 31 531 67 HOH HOH . 
K 7 HOH B 32 532 108 HOH HOH . 
K 7 HOH B 33 533 121 HOH HOH . 
K 7 HOH B 34 534 103 HOH HOH . 
K 7 HOH B 35 535 131 HOH HOH . 
K 7 HOH B 36 536 3 HOH HOH . 
K 7 HOH B 37 537 45 HOH HOH . 
K 7 HOH B 38 538 122 HOH HOH . 
K 7 HOH B 39 539 71 HOH HOH . 
K 7 HOH B 40 540 114 HOH HOH . 
K 7 HOH B 41 541 111 HOH HOH . 
K 7 HOH B 42 542 109 HOH HOH . 
K 7 HOH B 43 543 64 HOH HOH . 
K 7 HOH B 44 544 105 HOH HOH . 
K 7 HOH B 45 545 4 HOH HOH . 
K 7 HOH B 46 546 115 HOH HOH . 
K 7 HOH B 47 547 107 HOH HOH . 
K 7 HOH B 48 548 119 HOH HOH . 
K 7 HOH B 49 549 118 HOH HOH . 
K 7 HOH B 50 550 124 HOH HOH . 
K 7 HOH B 51 551 142 HOH HOH . 
K 7 HOH B 52 552 52 HOH HOH . 
K 7 HOH B 53 553 77 HOH HOH . 
K 7 HOH B 54 554 141 HOH HOH . 
K 7 HOH B 55 555 110 HOH HOH . 
K 7 HOH B 56 556 120 HOH HOH . 
K 7 HOH B 57 557 129 HOH HOH . 
K 7 HOH B 58 558 135 HOH HOH . 
K 7 HOH B 59 559 53 HOH HOH . 
K 7 HOH B 60 560 48 HOH HOH . 
K 7 HOH B 61 561 140 HOH HOH . 
K 7 HOH B 62 562 136 HOH HOH . 
K 7 HOH B 63 563 127 HOH HOH . 
K 7 HOH B 64 564 138 HOH HOH . 
K 7 HOH B 65 565 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 2 41.157 -14.041 -26.391 1 92.67 ? C1 NAG 401 B 1 
HETATM 2 C C2 NAG . . . G 2 42.651 -14.304 -26.609 1 100.95 ? C2 NAG 401 B 1 
HETATM 3 C C3 NAG . . . G 2 43.456 -13.059 -26.224 1 101.71 ? C3 NAG 401 B 1 
HETATM 4 C C4 NAG . . . G 2 42.953 -11.792 -26.931 1 105.87 ? C4 NAG 401 B 1 
HETATM 5 C C5 NAG . . . G 2 41.417 -11.671 -27.003 1 105.32 ? C5 NAG 401 B 1 
HETATM 6 C C6 NAG . . . G 2 41.008 -10.729 -28.136 1 105.54 ? C6 NAG 401 B 1 
HETATM 7 C C7 NAG . . . G 2 43.092 -16.732 -26.368 1 107.53 ? C7 NAG 401 B 1 
HETATM 8 C C8 NAG . . . G 2 43.618 -17.779 -25.43 1 106.28 ? C8 NAG 401 B 1 
HETATM 9 N N2 NAG . . . G 2 43.107 -15.482 -25.881 1 104.92 ? N2 NAG 401 B 1 
HETATM 10 O O3 NAG . . . G 2 44.839 -13.251 -26.546 1 97.35 ? O3 NAG 401 B 1 
HETATM 11 O O4 NAG . . . G 2 43.48 -10.646 -26.25 1 109.02 ? O4 NAG 401 B 1 
HETATM 12 O O5 NAG . . . G 2 40.749 -12.935 -27.218 1 100.21 ? O5 NAG 401 B 1 
HETATM 13 O O6 NAG . . . G 2 41.352 -9.366 -27.821 1 106.38 ? O6 NAG 401 B 1 
HETATM 14 O O7 NAG . . . G 2 42.684 -17.031 -27.485 1 105.31 ? O7 NAG 401 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#