data_5T5B # _model_server_result.job_id 75_Oc15TLm-XmzeNdX-KnQ _model_server_result.datetime_utc '2024-11-25 09:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5T5B # _exptl.entry_id 5T5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.17 _cell.angle_gamma 90 _cell.entry_id 5T5B _cell.length_a 40.931 _cell.length_b 159.047 _cell.length_c 100.606 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,L,M,N,R 1 1 C,D,E,H,I,J,K,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.11 ? disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 B SG CYS 137 L CYS 135 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 C SG CYS 22 A CYS 22 1_555 C SG CYS 98 A CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.095 ? disulf ? disulf7 C SG CYS 22 A CYS 22 1_555 C SG CYS 98 A CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.096 ? disulf ? disulf8 C SG CYS 158 A CYS 140 1_555 C SG CYS 214 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 D SG CYS 22 B CYS 23 1_555 D SG CYS 87 B CYS 88 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.062 ? disulf ? disulf10 D SG CYS 22 B CYS 23 1_555 D SG CYS 87 B CYS 88 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.062 ? disulf ? disulf11 D SG CYS 137 B CYS 135 1_555 D SG CYS 196 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5T5B _atom_sites.fract_transf_matrix[1][1] 0.024431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL L 1 301 301 GOL GOL . H 4 GOL A 1 301 301 GOL GOL . I 4 GOL A 1 302 302 GOL GOL . J 4 GOL A 1 303 303 GOL GOL . K 4 GOL B 1 301 301 GOL GOL . L 4 GOL E 1 201 201 GOL GOL . M 5 HOH H 1 301 301 HOH HOH . M 5 HOH H 2 302 302 HOH HOH . M 5 HOH H 3 303 303 HOH HOH . M 5 HOH H 4 304 304 HOH HOH . M 5 HOH H 5 305 305 HOH HOH . M 5 HOH H 6 306 306 HOH HOH . M 5 HOH H 7 307 307 HOH HOH . M 5 HOH H 8 308 308 HOH HOH . M 5 HOH H 9 309 309 HOH HOH . M 5 HOH H 10 310 310 HOH HOH . M 5 HOH H 11 311 311 HOH HOH . M 5 HOH H 12 312 312 HOH HOH . M 5 HOH H 13 313 313 HOH HOH . M 5 HOH H 14 314 314 HOH HOH . M 5 HOH H 15 315 315 HOH HOH . M 5 HOH H 16 316 316 HOH HOH . M 5 HOH H 17 317 317 HOH HOH . M 5 HOH H 18 318 318 HOH HOH . M 5 HOH H 19 319 319 HOH HOH . M 5 HOH H 20 320 320 HOH HOH . M 5 HOH H 21 321 321 HOH HOH . M 5 HOH H 22 322 322 HOH HOH . M 5 HOH H 23 323 323 HOH HOH . M 5 HOH H 24 324 324 HOH HOH . M 5 HOH H 25 325 325 HOH HOH . M 5 HOH H 26 326 326 HOH HOH . M 5 HOH H 27 327 327 HOH HOH . M 5 HOH H 28 328 328 HOH HOH . M 5 HOH H 29 329 329 HOH HOH . M 5 HOH H 30 330 330 HOH HOH . M 5 HOH H 31 331 331 HOH HOH . M 5 HOH H 32 332 332 HOH HOH . M 5 HOH H 33 333 333 HOH HOH . M 5 HOH H 34 334 334 HOH HOH . M 5 HOH H 35 335 335 HOH HOH . M 5 HOH H 36 336 336 HOH HOH . M 5 HOH H 37 337 337 HOH HOH . M 5 HOH H 38 338 338 HOH HOH . M 5 HOH H 39 339 339 HOH HOH . M 5 HOH H 40 340 340 HOH HOH . M 5 HOH H 41 341 341 HOH HOH . M 5 HOH H 42 342 342 HOH HOH . M 5 HOH H 43 343 343 HOH HOH . M 5 HOH H 44 344 344 HOH HOH . M 5 HOH H 45 345 345 HOH HOH . M 5 HOH H 46 346 346 HOH HOH . M 5 HOH H 47 347 347 HOH HOH . M 5 HOH H 48 348 348 HOH HOH . M 5 HOH H 49 349 349 HOH HOH . M 5 HOH H 50 350 350 HOH HOH . M 5 HOH H 51 351 351 HOH HOH . M 5 HOH H 52 352 352 HOH HOH . M 5 HOH H 53 353 353 HOH HOH . M 5 HOH H 54 354 354 HOH HOH . M 5 HOH H 55 355 355 HOH HOH . M 5 HOH H 56 356 356 HOH HOH . M 5 HOH H 57 357 357 HOH HOH . M 5 HOH H 58 358 358 HOH HOH . M 5 HOH H 59 359 359 HOH HOH . M 5 HOH H 60 360 360 HOH HOH . M 5 HOH H 61 361 361 HOH HOH . M 5 HOH H 62 362 362 HOH HOH . M 5 HOH H 63 363 363 HOH HOH . M 5 HOH H 64 364 364 HOH HOH . M 5 HOH H 65 365 365 HOH HOH . M 5 HOH H 66 366 366 HOH HOH . M 5 HOH H 67 367 367 HOH HOH . M 5 HOH H 68 368 368 HOH HOH . M 5 HOH H 69 369 369 HOH HOH . M 5 HOH H 70 370 370 HOH HOH . M 5 HOH H 71 371 371 HOH HOH . M 5 HOH H 72 372 372 HOH HOH . N 5 HOH L 1 401 401 HOH HOH . N 5 HOH L 2 402 402 HOH HOH . N 5 HOH L 3 403 403 HOH HOH . N 5 HOH L 4 404 404 HOH HOH . N 5 HOH L 5 405 405 HOH HOH . N 5 HOH L 6 406 406 HOH HOH . N 5 HOH L 7 407 407 HOH HOH . N 5 HOH L 8 408 408 HOH HOH . N 5 HOH L 9 409 409 HOH HOH . N 5 HOH L 10 410 410 HOH HOH . N 5 HOH L 11 411 411 HOH HOH . N 5 HOH L 12 412 412 HOH HOH . N 5 HOH L 13 413 413 HOH HOH . N 5 HOH L 14 414 414 HOH HOH . N 5 HOH L 15 415 415 HOH HOH . N 5 HOH L 16 416 416 HOH HOH . N 5 HOH L 17 417 417 HOH HOH . N 5 HOH L 18 418 418 HOH HOH . N 5 HOH L 19 419 419 HOH HOH . N 5 HOH L 20 420 420 HOH HOH . N 5 HOH L 21 421 421 HOH HOH . N 5 HOH L 22 422 422 HOH HOH . N 5 HOH L 23 423 423 HOH HOH . N 5 HOH L 24 424 424 HOH HOH . N 5 HOH L 25 425 425 HOH HOH . N 5 HOH L 26 426 426 HOH HOH . N 5 HOH L 27 427 427 HOH HOH . N 5 HOH L 28 428 428 HOH HOH . O 5 HOH A 1 401 401 HOH HOH . O 5 HOH A 2 402 402 HOH HOH . O 5 HOH A 3 403 403 HOH HOH . O 5 HOH A 4 404 404 HOH HOH . O 5 HOH A 5 405 405 HOH HOH . O 5 HOH A 6 406 406 HOH HOH . O 5 HOH A 7 407 407 HOH HOH . O 5 HOH A 8 408 408 HOH HOH . O 5 HOH A 9 409 409 HOH HOH . O 5 HOH A 10 410 410 HOH HOH . O 5 HOH A 11 411 411 HOH HOH . O 5 HOH A 12 412 412 HOH HOH . O 5 HOH A 13 413 413 HOH HOH . O 5 HOH A 14 414 414 HOH HOH . O 5 HOH A 15 415 415 HOH HOH . O 5 HOH A 16 416 416 HOH HOH . O 5 HOH A 17 417 417 HOH HOH . O 5 HOH A 18 418 418 HOH HOH . O 5 HOH A 19 419 419 HOH HOH . O 5 HOH A 20 420 420 HOH HOH . O 5 HOH A 21 421 421 HOH HOH . O 5 HOH A 22 422 422 HOH HOH . O 5 HOH A 23 423 423 HOH HOH . O 5 HOH A 24 424 424 HOH HOH . O 5 HOH A 25 425 425 HOH HOH . O 5 HOH A 26 426 426 HOH HOH . O 5 HOH A 27 427 427 HOH HOH . O 5 HOH A 28 428 428 HOH HOH . O 5 HOH A 29 429 429 HOH HOH . O 5 HOH A 30 430 430 HOH HOH . O 5 HOH A 31 431 431 HOH HOH . O 5 HOH A 32 432 432 HOH HOH . O 5 HOH A 33 433 433 HOH HOH . O 5 HOH A 34 434 434 HOH HOH . O 5 HOH A 35 435 435 HOH HOH . O 5 HOH A 36 436 436 HOH HOH . O 5 HOH A 37 437 437 HOH HOH . O 5 HOH A 38 438 438 HOH HOH . O 5 HOH A 39 439 439 HOH HOH . O 5 HOH A 40 440 440 HOH HOH . O 5 HOH A 41 441 441 HOH HOH . O 5 HOH A 42 442 442 HOH HOH . O 5 HOH A 43 443 443 HOH HOH . O 5 HOH A 44 444 444 HOH HOH . O 5 HOH A 45 445 445 HOH HOH . O 5 HOH A 46 446 446 HOH HOH . O 5 HOH A 47 447 447 HOH HOH . O 5 HOH A 48 448 448 HOH HOH . O 5 HOH A 49 449 449 HOH HOH . O 5 HOH A 50 450 450 HOH HOH . O 5 HOH A 51 451 451 HOH HOH . O 5 HOH A 52 452 452 HOH HOH . O 5 HOH A 53 453 453 HOH HOH . O 5 HOH A 54 454 454 HOH HOH . O 5 HOH A 55 455 455 HOH HOH . O 5 HOH A 56 456 456 HOH HOH . O 5 HOH A 57 457 457 HOH HOH . O 5 HOH A 58 458 458 HOH HOH . O 5 HOH A 59 459 459 HOH HOH . O 5 HOH A 60 460 460 HOH HOH . O 5 HOH A 61 461 461 HOH HOH . O 5 HOH A 62 462 462 HOH HOH . O 5 HOH A 63 463 463 HOH HOH . O 5 HOH A 64 464 464 HOH HOH . O 5 HOH A 65 465 465 HOH HOH . O 5 HOH A 66 466 466 HOH HOH . O 5 HOH A 67 467 467 HOH HOH . O 5 HOH A 68 468 468 HOH HOH . O 5 HOH A 69 469 469 HOH HOH . O 5 HOH A 70 470 470 HOH HOH . P 5 HOH B 1 401 401 HOH HOH . P 5 HOH B 2 402 402 HOH HOH . P 5 HOH B 3 403 403 HOH HOH . P 5 HOH B 4 404 404 HOH HOH . P 5 HOH B 5 405 405 HOH HOH . P 5 HOH B 6 406 406 HOH HOH . P 5 HOH B 7 407 407 HOH HOH . P 5 HOH B 8 408 408 HOH HOH . P 5 HOH B 9 409 409 HOH HOH . P 5 HOH B 10 410 410 HOH HOH . P 5 HOH B 11 411 411 HOH HOH . P 5 HOH B 12 412 412 HOH HOH . P 5 HOH B 13 413 413 HOH HOH . P 5 HOH B 14 414 414 HOH HOH . P 5 HOH B 15 415 415 HOH HOH . P 5 HOH B 16 416 416 HOH HOH . P 5 HOH B 17 417 417 HOH HOH . P 5 HOH B 18 418 418 HOH HOH . P 5 HOH B 19 419 419 HOH HOH . P 5 HOH B 20 420 420 HOH HOH . P 5 HOH B 21 421 421 HOH HOH . P 5 HOH B 22 422 422 HOH HOH . P 5 HOH B 23 423 423 HOH HOH . P 5 HOH B 24 424 424 HOH HOH . P 5 HOH B 25 425 425 HOH HOH . P 5 HOH B 26 426 426 HOH HOH . P 5 HOH B 27 427 427 HOH HOH . Q 5 HOH O 1 201 201 HOH HOH . Q 5 HOH O 2 202 202 HOH HOH . Q 5 HOH O 3 203 203 HOH HOH . Q 5 HOH O 4 204 204 HOH HOH . Q 5 HOH O 5 205 205 HOH HOH . Q 5 HOH O 6 206 206 HOH HOH . Q 5 HOH O 7 207 207 HOH HOH . Q 5 HOH O 8 208 208 HOH HOH . Q 5 HOH O 9 209 209 HOH HOH . R 5 HOH E 1 301 301 HOH HOH . R 5 HOH E 2 302 302 HOH HOH . R 5 HOH E 3 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -38.552 -46.278 -25.056 1 83.59 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . H 4 -39.283 -45.193 -25.597 1 77.08 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . H 4 -38.954 -47.617 -25.688 1 85.1 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . H 4 -37.876 -48.131 -26.445 1 89.51 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . H 4 -39.263 -48.624 -24.585 1 74.97 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . H 4 -38.075 -48.871 -23.861 1 60.55 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #