data_5T5G # _model_server_result.job_id J-vYgAZeATPPPyuzexpzYg _model_server_result.datetime_utc '2024-11-05 00:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5T5G # _exptl.entry_id 5T5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.598 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(2-aminoethoxy)-6-methoxy-2-(pyrrolidin-1-yl)-N-[5-(pyrrolidin-1-yl)pentyl]quinazolin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T5G _cell.length_a 88.957 _cell.length_b 88.957 _cell.length_c 34.989 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 79 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 311 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 79 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 311 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.421 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H38 N6 O2' _chem_comp.formula_weight 442.598 _chem_comp.id 75P _chem_comp.mon_nstd_flag . _chem_comp.name 7-(2-aminoethoxy)-6-methoxy-2-(pyrrolidin-1-yl)-N-[5-(pyrrolidin-1-yl)pentyl]quinazolin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAP 75P sing 1 n n CAO CAN 75P sing 2 n n CAP CAQ 75P sing 3 n n CAN NAM 75P sing 4 n n NAM CAQ 75P sing 5 n n NAM CAL 75P sing 6 n n CAL CAK 75P sing 7 n n CAK CAJ 75P sing 8 n n CAJ CAI 75P sing 9 n n CAI CAH 75P sing 10 n n CBD CBE 75P sing 11 n n CBD CBC 75P sing 12 n n CBF CBE 75P sing 13 n n CBF NBB 75P sing 14 n n CBC NBB 75P sing 15 n n NBB C2 75P sing 16 n n CAH NAG 75P sing 17 n n N1 C2 75P doub 18 n y N1 C6 75P sing 19 n y C2 N3 75P sing 20 n y NAG C6 75P sing 21 n n C6 C5 75P doub 22 n y N3 C4 75P doub 23 n y NBA CAZ 75P sing 24 n n C5 C4 75P sing 25 n y C5 CAD 75P sing 26 n y C4 CAV 75P sing 27 n y CAD CAC 75P doub 28 n y CAV CAW 75P doub 29 n y CAC CAW 75P sing 30 n y CAC OAB 75P sing 31 n n CAW OAX 75P sing 32 n n CAY OAX 75P sing 33 n n CAY CAZ 75P sing 34 n n OAB CAA 75P sing 35 n n NBA H1 75P sing 36 n n NBA H2 75P sing 37 n n CAZ H4 75P sing 38 n n CAZ H5 75P sing 39 n n CAY H6 75P sing 40 n n CAY H7 75P sing 41 n n CAA H8 75P sing 42 n n CAA H9 75P sing 43 n n CAA H10 75P sing 44 n n CAD H11 75P sing 45 n n CAV H12 75P sing 46 n n CBF H13 75P sing 47 n n CBF H14 75P sing 48 n n CBE H15 75P sing 49 n n CBE H16 75P sing 50 n n CBD H17 75P sing 51 n n CBD H18 75P sing 52 n n CBC H19 75P sing 53 n n CBC H20 75P sing 54 n n NAG H21 75P sing 55 n n CAH H22 75P sing 56 n n CAH H23 75P sing 57 n n CAI H24 75P sing 58 n n CAI H25 75P sing 59 n n CAJ H26 75P sing 60 n n CAJ H27 75P sing 61 n n CAK H28 75P sing 62 n n CAK H29 75P sing 63 n n CAL H30 75P sing 64 n n CAL H31 75P sing 65 n n CAN H33 75P sing 66 n n CAN H34 75P sing 67 n n CAQ H35 75P sing 68 n n CAQ H36 75P sing 69 n n CAP H37 75P sing 70 n n CAP H38 75P sing 71 n n CAO H39 75P sing 72 n n CAO H40 75P sing 73 n n # _atom_sites.entry_id 5T5G _atom_sites.fract_transf_matrix[1][1] 0.011241 _atom_sites.fract_transf_matrix[1][2] 0.00649 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 401 1 UNX UNX . C 2 UNX A 1 402 2 UNX UNX . D 2 UNX A 1 403 3 UNX UNX . E 2 UNX A 1 404 4 UNX UNX . F 2 UNX A 1 405 5 UNX UNX . G 2 UNX A 1 406 6 UNX UNX . H 3 75P A 1 407 1 75P DRG . I 4 HOH A 1 501 5 HOH HOH . I 4 HOH A 2 502 13 HOH HOH . I 4 HOH A 3 503 11 HOH HOH . I 4 HOH A 4 504 20 HOH HOH . I 4 HOH A 5 505 3 HOH HOH . I 4 HOH A 6 506 21 HOH HOH . I 4 HOH A 7 507 16 HOH HOH . I 4 HOH A 8 508 1 HOH HOH . I 4 HOH A 9 509 7 HOH HOH . I 4 HOH A 10 510 2 HOH HOH . I 4 HOH A 11 511 17 HOH HOH . I 4 HOH A 12 512 10 HOH HOH . I 4 HOH A 13 513 12 HOH HOH . I 4 HOH A 14 514 4 HOH HOH . I 4 HOH A 15 515 23 HOH HOH . I 4 HOH A 16 516 18 HOH HOH . I 4 HOH A 17 517 6 HOH HOH . I 4 HOH A 18 518 15 HOH HOH . I 4 HOH A 19 519 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 75P . . . H 3 42.768 54.314 1.819 1 36.03 ? C4 75P 407 A 1 HETATM 2 C C5 75P . . . H 3 41.474 54.897 1.778 1 37.57 ? C5 75P 407 A 1 HETATM 3 C C6 75P . . . H 3 40.385 53.992 1.504 1 38.14 ? C6 75P 407 A 1 HETATM 4 N N1 75P . . . H 3 40.614 52.7 1.266 1 39.42 ? N1 75P 407 A 1 HETATM 5 N N3 75P . . . H 3 42.983 52.978 1.587 1 36.89 ? N3 75P 407 A 1 HETATM 6 N NBA 75P . . . H 3 46.818 59.259 1.605 1 49.36 ? NBA 75P 407 A 1 HETATM 7 C CAZ 75P . . . H 3 46.991 58.198 2.63 1 42.7 ? CAZ 75P 407 A 1 HETATM 8 C CAY 75P . . . H 3 46.083 57.042 2.352 1 44.26 ? CAY 75P 407 A 1 HETATM 9 O OAX 75P . . . H 3 44.715 57.399 2.473 1 40.18 ? OAX 75P 407 A 1 HETATM 10 C CAW 75P . . . H 3 43.726 56.489 2.236 1 39.43 ? CAW 75P 407 A 1 HETATM 11 C CAC 75P . . . H 3 42.445 57.074 2.186 1 37.41 ? CAC 75P 407 A 1 HETATM 12 O OAB 75P . . . H 3 42.43 58.426 2.403 1 45.42 ? OAB 75P 407 A 1 HETATM 13 C CAA 75P . . . H 3 41.161 59.09 2.456 1 47.05 ? CAA 75P 407 A 1 HETATM 14 C CAD 75P . . . H 3 41.347 56.301 1.961 1 36.73 ? CAD 75P 407 A 1 HETATM 15 C CAV 75P . . . H 3 43.885 55.142 2.062 1 36.65 ? CAV 75P 407 A 1 HETATM 16 C C2 75P . . . H 3 41.884 52.245 1.311 1 38.18 ? C2 75P 407 A 1 HETATM 17 N NBB 75P . . . H 3 42.066 50.927 1.066 1 41.2 ? NBB 75P 407 A 1 HETATM 18 C CBF 75P . . . H 3 40.969 50.047 0.668 1 39.5 ? CBF 75P 407 A 1 HETATM 19 C CBE 75P . . . H 3 41.538 48.68 0.878 1 44.1 ? CBE 75P 407 A 1 HETATM 20 C CBD 75P . . . H 3 42.996 48.837 0.574 1 41.67 ? CBD 75P 407 A 1 HETATM 21 C CBC 75P . . . H 3 43.353 50.223 1.051 1 41.45 ? CBC 75P 407 A 1 HETATM 22 N NAG 75P . A . H 3 39.043 54.464 1.483 0.5 40.76 ? NAG 75P 407 A 1 HETATM 23 N NAG 75P . B . H 3 39.03 54.445 1.516 0.5 43.37 ? NAG 75P 407 A 1 HETATM 24 C CAH 75P . A . H 3 37.903 53.606 1.21 0.5 42.46 ? CAH 75P 407 A 1 HETATM 25 C CAH 75P . B . H 3 37.92 53.663 0.998 0.5 47.61 ? CAH 75P 407 A 1 HETATM 26 C CAI 75P . A . H 3 37.72 53.417 -0.283 0.5 47.07 ? CAI 75P 407 A 1 HETATM 27 C CAI 75P . B . H 3 37.813 53.791 -0.51 0.5 54.21 ? CAI 75P 407 A 1 HETATM 28 C CAJ 75P . A . H 3 37.006 54.588 -0.942 0.5 52.87 ? CAJ 75P 407 A 1 HETATM 29 C CAJ 75P . B . H 3 36.828 54.867 -0.928 0.5 62.56 ? CAJ 75P 407 A 1 HETATM 30 C CAK 75P . A . H 3 37.847 55.415 -1.904 0.5 57.04 ? CAK 75P 407 A 1 HETATM 31 C CAK 75P . B . H 3 37.384 55.888 -1.904 0.5 69.99 ? CAK 75P 407 A 1 HETATM 32 C CAL 75P . A . H 3 37.264 56.805 -2.076 0.5 59.87 ? CAL 75P 407 A 1 HETATM 33 C CAL 75P . B . H 3 36.275 56.519 -2.719 0.5 72.57 ? CAL 75P 407 A 1 HETATM 34 N NAM 75P . A . H 3 36.516 56.988 -3.368 0.5 61.76 ? NAM 75P 407 A 1 HETATM 35 N NAM 75P . B . H 3 36.78 57.344 -3.866 0.5 78.03 ? NAM 75P 407 A 1 HETATM 36 C CAN 75P . A . H 3 36.591 58.382 -3.939 0.5 64.63 ? CAN 75P 407 A 1 HETATM 37 C CAN 75P . B . H 3 37.078 58.781 -3.516 0.5 78.57 ? CAN 75P 407 A 1 HETATM 38 C CAQ 75P . A . H 3 35.04 56.702 -3.325 0.5 61.62 ? CAQ 75P 407 A 1 HETATM 39 C CAQ 75P . B . H 3 35.837 57.388 -5.04 0.5 77.66 ? CAQ 75P 407 A 1 HETATM 40 C CAP 75P . A . H 3 34.539 57.304 -4.611 0.5 62.53 ? CAP 75P 407 A 1 HETATM 41 C CAP 75P . B . H 3 35.81 58.825 -5.479 0.5 76.92 ? CAP 75P 407 A 1 HETATM 42 C CAO 75P . A . H 3 35.382 58.535 -4.835 0.5 63.8 ? CAO 75P 407 A 1 HETATM 43 C CAO 75P . B . H 3 36.064 59.588 -4.273 0.5 76.68 ? CAO 75P 407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #