data_5T5T # _model_server_result.job_id N6KMzytOMRBdWVc4D3jLeg _model_server_result.datetime_utc '2024-12-23 13:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":4000}' # _entry.id 5T5T # _exptl.entry_id 5T5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.78 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-chloro-5-[6-(dimethylamino)-2-methoxypyridin-3-yl]-1H-indole-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T5T _cell.length_a 125.04 _cell.length_b 125.04 _cell.length_c 403.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.52 -108.287816 -67.226667 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C17 H16 Cl N3 O3' _chem_comp.formula_weight 345.78 _chem_comp.id 75O _chem_comp.mon_nstd_flag . _chem_comp.name '6-chloro-5-[6-(dimethylamino)-2-methoxypyridin-3-yl]-1H-indole-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 O1 75O sing 1 n n O1 C7 75O sing 2 n n C7 N2 75O doub 3 n y C7 C6 75O sing 4 n y C1 N1 75O sing 5 n n N2 C3 75O sing 6 n y N3 C15 75O sing 7 n y N3 C12 75O sing 8 n y C13 C12 75O doub 9 n y C13 C14 75O sing 10 n y C15 C16 75O doub 11 n y C12 C11 75O sing 12 n y CL1 C14 75O sing 13 n n C14 C9 75O doub 14 n y C16 C11 75O sing 15 n y C16 C17 75O sing 16 n n C11 C10 75O doub 17 n y O3 C17 75O doub 18 n n C17 O2 75O sing 19 n n C9 C10 75O sing 20 n y C9 C6 75O sing 21 n n C6 C5 75O doub 22 n y C3 N1 75O sing 23 n n C3 C4 75O doub 24 n y N1 C2 75O sing 25 n n C5 C4 75O sing 26 n y N3 H1 75O sing 27 n n C4 H2 75O sing 28 n n C13 H3 75O sing 29 n n C8 H4 75O sing 30 n n C8 H5 75O sing 31 n n C8 H6 75O sing 32 n n C1 H7 75O sing 33 n n C1 H8 75O sing 34 n n C1 H9 75O sing 35 n n C2 H10 75O sing 36 n n C2 H11 75O sing 37 n n C2 H12 75O sing 38 n n C5 H13 75O sing 39 n n C10 H14 75O sing 40 n n C15 H15 75O sing 41 n n O2 H16 75O sing 42 n n # _atom_sites.entry_id 5T5T _atom_sites.fract_transf_matrix[1][1] 0.007997 _atom_sites.fract_transf_matrix[1][2] 0.004617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 4000 STU STU . E 5 CL A 1 602 1 CL CL . F 5 CL A 1 603 4 CL CL . G 5 CL A 1 604 5 CL CL . H 6 SO4 A 1 605 2 SO4 SO4 . I 7 75O B 1 4000 4000 75O PFE . J 8 AMP C 1 401 1 AMP AMP . K 8 AMP C 1 402 2 AMP AMP . L 9 ADP C 1 403 3 ADP ADP . M 6 SO4 C 1 404 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 75O . . . I 7 44.067 -78.879 -39.559 1 86.22 ? N3 75O 4000 B 1 HETATM 2 C C4 75O . . . I 7 50.76 -82.652 -37.857 1 82.96 ? C4 75O 4000 B 1 HETATM 3 N N2 75O . . . I 7 50.053 -83.811 -39.854 1 83.96 ? N2 75O 4000 B 1 HETATM 4 C C7 75O . . . I 7 48.974 -83.041 -39.893 1 86.02 ? C7 75O 4000 B 1 HETATM 5 C C6 75O . . . I 7 48.702 -82.024 -38.945 1 84.87 ? C6 75O 4000 B 1 HETATM 6 C C9 75O . . . I 7 47.532 -81.099 -39.079 1 85.14 ? C9 75O 4000 B 1 HETATM 7 C C13 75O . . . I 7 46.578 -78.886 -39.477 1 83.51 ? C13 75O 4000 B 1 HETATM 8 C C8 75O . . . I 7 48.246 -84.333 -41.747 1 89.58 ? C8 75O 4000 B 1 HETATM 9 C C16 75O . . . I 7 43.702 -81.069 -39.206 1 88.48 ? C16 75O 4000 B 1 HETATM 10 C C1 75O . . . I 7 52.207 -85.473 -39.869 1 77.06 ? C1 75O 4000 B 1 HETATM 11 N N1 75O . . . I 7 51.959 -84.521 -38.801 1 78.54 ? N1 75O 4000 B 1 HETATM 12 C C2 75O . . . I 7 52.79 -84.659 -37.617 1 78.36 ? C2 75O 4000 B 1 HETATM 13 C C3 75O . . . I 7 50.932 -83.626 -38.857 1 81.91 ? C3 75O 4000 B 1 HETATM 14 C C5 75O . . . I 7 49.632 -81.853 -37.918 1 83.39 ? C5 75O 4000 B 1 HETATM 15 O O1 75O . . . I 7 48.061 -83.224 -40.87 1 88.28 ? O1 75O 4000 B 1 HETATM 16 C C10 75O . . . I 7 46.247 -81.641 -39.01 1 86.85 ? C10 75O 4000 B 1 HETATM 17 C C11 75O . . . I 7 45.127 -80.829 -39.187 1 87.16 ? C11 75O 4000 B 1 HETATM 18 C C12 75O . . . I 7 45.311 -79.45 -39.417 1 85.48 ? C12 75O 4000 B 1 HETATM 19 C C14 75O . . . I 7 47.674 -79.714 -39.306 1 83.23 ? C14 75O 4000 B 1 HETATM 20 CL CL1 75O . . . I 7 49.251 -79.015 -39.371 1 83.13 ? CL1 75O 4000 B 1 HETATM 21 C C15 75O . . . I 7 43.111 -79.847 -39.428 1 87.31 ? C15 75O 4000 B 1 HETATM 22 C C17 75O . . . I 7 43.016 -82.384 -39.086 1 89.86 ? C17 75O 4000 B 1 HETATM 23 O O2 75O . . . I 7 43.649 -83.438 -38.999 1 89.03 ? O2 75O 4000 B 1 HETATM 24 O O3 75O . . . I 7 41.705 -82.341 -39.118 1 91.26 ? O3 75O 4000 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #