data_5T5T
#
_model_server_result.job_id            s1VcG_XO1ys07FaSCbPN2g 
_model_server_result.datetime_utc      '2024-12-23 12:38:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    5T5T 
#
_exptl.entry_id    5T5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5T5T 
_cell.length_a            125.04 
_cell.length_b            125.04 
_cell.length_c            403.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.52 -108.287816 -67.226667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 99 n n 
P O2P AMP sing 100 n n 
P O3P AMP sing 101 n n 
P O5' AMP sing 102 n n 
O2P HOP2 AMP sing 103 n n 
O3P HOP3 AMP sing 104 n n 
O5' C5' AMP sing 105 n n 
C5' C4' AMP sing 106 n n 
C5' "H5'1" AMP sing 107 n n 
C5' "H5'2" AMP sing 108 n n 
C4' O4' AMP sing 109 n n 
C4' C3' AMP sing 110 n n 
C4' H4' AMP sing 111 n n 
O4' C1' AMP sing 112 n n 
C3' O3' AMP sing 113 n n 
C3' C2' AMP sing 114 n n 
C3' H3' AMP sing 115 n n 
O3' HO3' AMP sing 116 n n 
C2' O2' AMP sing 117 n n 
C2' C1' AMP sing 118 n n 
C2' H2' AMP sing 119 n n 
O2' HO2' AMP sing 120 n n 
C1' N9 AMP sing 121 n n 
C1' H1' AMP sing 122 n n 
N9 C8 AMP sing 123 n y 
N9 C4 AMP sing 124 n y 
C8 N7 AMP doub 125 n y 
C8 H8 AMP sing 126 n n 
N7 C5 AMP sing 127 n y 
C5 C6 AMP sing 128 n y 
C5 C4 AMP doub 129 n y 
C6 N6 AMP sing 130 n n 
C6 N1 AMP doub 131 n y 
N6 HN61 AMP sing 132 n n 
N6 HN62 AMP sing 133 n n 
N1 C2 AMP sing 134 n y 
C2 N3 AMP doub 135 n y 
C2 H2 AMP sing 136 n n 
N3 C4 AMP sing 137 n y 
#
_atom_sites.entry_id                     5T5T 
_atom_sites.fract_transf_matrix[1][1]    0.007997 
_atom_sites.fract_transf_matrix[1][2]    0.004617 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 4000 STU STU . 
E 5 CL A 1 602 1 CL CL . 
F 5 CL A 1 603 4 CL CL . 
G 5 CL A 1 604 5 CL CL . 
H 6 SO4 A 1 605 2 SO4 SO4 . 
I 7 75O B 1 4000 4000 75O PFE . 
J 8 AMP C 1 401 1 AMP AMP . 
K 8 AMP C 1 402 2 AMP AMP . 
L 9 ADP C 1 403 3 ADP ADP . 
M 6 SO4 C 1 404 1 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . J 8 26.985 -37.348 20.12 1 149.96 ? P AMP 401 C 1 
HETATM 2 O O1P AMP . . . J 8 27.526 -38.466 19.291 1 149.3 ? O1P AMP 401 C 1 
HETATM 3 O O2P AMP . . . J 8 26.578 -37.806 21.525 1 149.34 ? O2P AMP 401 C 1 
HETATM 4 O O3P AMP . . . J 8 25.775 -36.637 19.481 1 148.26 ? O3P AMP 401 C 1 
HETATM 5 O O5' AMP . . . J 8 28.106 -36.252 20.34 1 153.93 ? O5' AMP 401 C 1 
HETATM 6 C C5' AMP . . . J 8 28.377 -34.991 19.693 1 156.37 ? C5' AMP 401 C 1 
HETATM 7 C C4' AMP . . . J 8 28.808 -33.988 20.736 1 159.98 ? C4' AMP 401 C 1 
HETATM 8 O O4' AMP . . . J 8 27.798 -33.881 21.766 1 158.25 ? O4' AMP 401 C 1 
HETATM 9 C C3' AMP . . . J 8 30.133 -34.274 21.448 1 163.49 ? C3' AMP 401 C 1 
HETATM 10 O O3' AMP . . . J 8 30.967 -33.12 21.49 1 169.51 ? O3' AMP 401 C 1 
HETATM 11 C C2' AMP . . . J 8 29.692 -34.746 22.838 1 162.07 ? C2' AMP 401 C 1 
HETATM 12 O O2' AMP . . . J 8 30.654 -34.48 23.853 1 165.6 ? O2' AMP 401 C 1 
HETATM 13 C C1' AMP . . . J 8 28.414 -33.938 23.036 1 160.72 ? C1' AMP 401 C 1 
HETATM 14 N N9 AMP . . . J 8 27.465 -34.51 23.989 1 158.02 ? N9 AMP 401 C 1 
HETATM 15 C C8 AMP . . . J 8 26.987 -35.799 24.008 1 154.85 ? C8 AMP 401 C 1 
HETATM 16 N N7 AMP . . . J 8 26.129 -36.031 24.977 1 153.99 ? N7 AMP 401 C 1 
HETATM 17 C C5 AMP . . . J 8 26.039 -34.817 25.635 1 155.58 ? C5 AMP 401 C 1 
HETATM 18 C C6 AMP . . . J 8 25.287 -34.398 26.756 1 154.86 ? C6 AMP 401 C 1 
HETATM 19 N N6 AMP . . . J 8 24.473 -35.2 27.444 1 152.83 ? N6 AMP 401 C 1 
HETATM 20 N N1 AMP . . . J 8 25.418 -33.111 27.152 1 157.3 ? N1 AMP 401 C 1 
HETATM 21 C C2 AMP . . . J 8 26.245 -32.307 26.475 1 160.02 ? C2 AMP 401 C 1 
HETATM 22 N N3 AMP . . . J 8 27.004 -32.589 25.412 1 160.6 ? N3 AMP 401 C 1 
HETATM 23 C C4 AMP . . . J 8 26.855 -33.873 25.038 1 158.34 ? C4 AMP 401 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#