data_5T5T
#
_model_server_result.job_id            QOvKTl1jq7qMo1rRTwZPHQ 
_model_server_result.datetime_utc      '2024-12-23 13:08:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    5T5T 
#
_exptl.entry_id    5T5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5T5T 
_cell.length_a            125.04 
_cell.length_b            125.04 
_cell.length_c            403.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.52 -108.287816 -67.226667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 99 n n 
P O2P AMP sing 100 n n 
P O3P AMP sing 101 n n 
P O5' AMP sing 102 n n 
O2P HOP2 AMP sing 103 n n 
O3P HOP3 AMP sing 104 n n 
O5' C5' AMP sing 105 n n 
C5' C4' AMP sing 106 n n 
C5' "H5'1" AMP sing 107 n n 
C5' "H5'2" AMP sing 108 n n 
C4' O4' AMP sing 109 n n 
C4' C3' AMP sing 110 n n 
C4' H4' AMP sing 111 n n 
O4' C1' AMP sing 112 n n 
C3' O3' AMP sing 113 n n 
C3' C2' AMP sing 114 n n 
C3' H3' AMP sing 115 n n 
O3' HO3' AMP sing 116 n n 
C2' O2' AMP sing 117 n n 
C2' C1' AMP sing 118 n n 
C2' H2' AMP sing 119 n n 
O2' HO2' AMP sing 120 n n 
C1' N9 AMP sing 121 n n 
C1' H1' AMP sing 122 n n 
N9 C8 AMP sing 123 n y 
N9 C4 AMP sing 124 n y 
C8 N7 AMP doub 125 n y 
C8 H8 AMP sing 126 n n 
N7 C5 AMP sing 127 n y 
C5 C6 AMP sing 128 n y 
C5 C4 AMP doub 129 n y 
C6 N6 AMP sing 130 n n 
C6 N1 AMP doub 131 n y 
N6 HN61 AMP sing 132 n n 
N6 HN62 AMP sing 133 n n 
N1 C2 AMP sing 134 n y 
C2 N3 AMP doub 135 n y 
C2 H2 AMP sing 136 n n 
N3 C4 AMP sing 137 n y 
#
_atom_sites.entry_id                     5T5T 
_atom_sites.fract_transf_matrix[1][1]    0.007997 
_atom_sites.fract_transf_matrix[1][2]    0.004617 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 4000 STU STU . 
E 5 CL A 1 602 1 CL CL . 
F 5 CL A 1 603 4 CL CL . 
G 5 CL A 1 604 5 CL CL . 
H 6 SO4 A 1 605 2 SO4 SO4 . 
I 7 75O B 1 4000 4000 75O PFE . 
J 8 AMP C 1 401 1 AMP AMP . 
K 8 AMP C 1 402 2 AMP AMP . 
L 9 ADP C 1 403 3 ADP ADP . 
M 6 SO4 C 1 404 1 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . K 8 23.354 -46.094 21.151 1 196.73 ? P AMP 402 C 1 
HETATM 2 O O1P AMP . . . K 8 23.27 -46.618 19.714 1 195.34 ? O1P AMP 402 C 1 
HETATM 3 O O2P AMP . . . K 8 22.851 -44.681 21.277 1 195.77 ? O2P AMP 402 C 1 
HETATM 4 O O3P AMP . . . K 8 24.793 -46.266 21.632 1 199.14 ? O3P AMP 402 C 1 
HETATM 5 O O5' AMP . . . K 8 22.526 -47.114 22.034 1 197.05 ? O5' AMP 402 C 1 
HETATM 6 C C5' AMP . . . K 8 21.393 -46.874 22.888 1 197.65 ? C5' AMP 402 C 1 
HETATM 7 C C4' AMP . . . K 8 21.414 -47.812 24.068 1 200.07 ? C4' AMP 402 C 1 
HETATM 8 O O4' AMP . . . K 8 22.656 -47.658 24.795 1 202.84 ? O4' AMP 402 C 1 
HETATM 9 C C3' AMP . . . K 8 20.289 -47.588 25.08 1 201.38 ? C3' AMP 402 C 1 
HETATM 10 O O3' AMP . . . K 8 19.708 -48.814 25.511 1 202.87 ? O3' AMP 402 C 1 
HETATM 11 C C2' AMP . . . K 8 20.98 -46.801 26.197 1 203.94 ? C2' AMP 402 C 1 
HETATM 12 O O2' AMP . . . K 8 20.371 -46.973 27.471 1 206.15 ? O2' AMP 402 C 1 
HETATM 13 C C1' AMP . . . K 8 22.38 -47.408 26.159 1 205.73 ? C1' AMP 402 C 1 
HETATM 14 N N9 AMP . . . K 8 23.435 -46.554 26.705 1 206.51 ? N9 AMP 402 C 1 
HETATM 15 C C8 AMP . . . K 8 23.89 -45.364 26.207 1 206.87 ? C8 AMP 402 C 1 
HETATM 16 N N7 AMP . . . K 8 24.858 -44.824 26.901 1 207.24 ? N7 AMP 402 C 1 
HETATM 17 C C5 AMP . . . K 8 25.059 -45.724 27.94 1 207 ? C5 AMP 402 C 1 
HETATM 18 C C6 AMP . . . K 8 25.949 -45.735 29.033 1 206.97 ? C6 AMP 402 C 1 
HETATM 19 N N6 AMP . . . K 8 26.869 -44.79 29.253 1 207.1 ? N6 AMP 402 C 1 
HETATM 20 N N1 AMP . . . K 8 25.874 -46.773 29.897 1 206.99 ? N1 AMP 402 C 1 
HETATM 21 C C2 AMP . . . K 8 24.973 -47.737 29.669 1 206.96 ? C2 AMP 402 C 1 
HETATM 22 N N3 AMP . . . K 8 24.091 -47.84 28.67 1 206.84 ? N3 AMP 402 C 1 
HETATM 23 C C4 AMP . . . K 8 24.184 -46.796 27.835 1 206.72 ? C4 AMP 402 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#