data_5T5T # _model_server_result.job_id dvwBq-yxoehanKHKDgZJ6g _model_server_result.datetime_utc '2024-12-23 12:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5T5T # _exptl.entry_id 5T5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T5T _cell.length_a 125.04 _cell.length_b 125.04 _cell.length_c 403.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.52 -108.287816 -67.226667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 417 n n O4 C21 STU sing 418 n n C25 C24 STU sing 419 n n C25 N3 STU sing 420 n n C25 H25 STU sing 421 n n C24 C23 STU sing 422 n n C24 H241 STU sing 423 n n C24 H242 STU sing 424 n n C23 C22 STU sing 425 n n C23 N4 STU sing 426 n n C23 H23 STU sing 427 n n C22 C21 STU sing 428 n n C22 O6 STU sing 429 n n C22 H22 STU sing 430 n n C21 C26 STU sing 431 n n C21 N2 STU sing 432 n n C26 H261 STU sing 433 n n C26 H262 STU sing 434 n n C26 H263 STU sing 435 n n N2 C18 STU sing 436 n y N2 C17 STU sing 437 n y C18 C19 STU doub 438 n y C18 C11 STU sing 439 n y C19 C6 STU sing 440 n y C19 N3 STU sing 441 n y C6 C7 STU doub 442 n y C6 C5 STU sing 443 n y C7 C10 STU sing 444 n y C7 C8 STU sing 445 n n C10 C11 STU doub 446 n y C10 C9 STU sing 447 n n C11 C12 STU sing 448 n y C12 C17 STU doub 449 n y C12 C13 STU sing 450 n y C17 C16 STU sing 451 n y C16 C15 STU doub 452 n y C16 H16 STU sing 453 n n C15 C14 STU sing 454 n y C15 H15 STU sing 455 n n C14 C13 STU doub 456 n y C14 H14 STU sing 457 n n C13 H13 STU sing 458 n n C9 N1 STU sing 459 n n C9 H91 STU sing 460 n n C9 H92 STU sing 461 n n N1 C8 STU sing 462 n n N1 HN1 STU sing 463 n n C8 O5 STU doub 464 n n C5 C20 STU doub 465 n y C5 C4 STU sing 466 n y C20 C1 STU sing 467 n y C20 N3 STU sing 468 n y C1 C2 STU doub 469 n y C1 H1 STU sing 470 n n C2 C3 STU sing 471 n y C2 H2 STU sing 472 n n C3 C4 STU doub 473 n y C3 H3 STU sing 474 n n C4 H4 STU sing 475 n n O6 C27 STU sing 476 n n C27 H271 STU sing 477 n n C27 H272 STU sing 478 n n C27 H273 STU sing 479 n n N4 C28 STU sing 480 n n N4 HN4 STU sing 481 n n C28 H281 STU sing 482 n n C28 H282 STU sing 483 n n C28 H283 STU sing 484 n n # _atom_sites.entry_id 5T5T _atom_sites.fract_transf_matrix[1][1] 0.007997 _atom_sites.fract_transf_matrix[1][2] 0.004617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 4000 STU STU . E 5 CL A 1 602 1 CL CL . F 5 CL A 1 603 4 CL CL . G 5 CL A 1 604 5 CL CL . H 6 SO4 A 1 605 2 SO4 SO4 . I 7 75O B 1 4000 4000 75O PFE . J 8 AMP C 1 401 1 AMP AMP . K 8 AMP C 1 402 2 AMP AMP . L 9 ADP C 1 403 3 ADP ADP . M 6 SO4 C 1 404 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 4 42.964 -86.972 -26.206 1 65.61 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . D 4 43.591 -87.964 -25.403 1 65.02 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . D 4 42.606 -88.622 -24.463 1 65.22 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . D 4 41.18 -88.093 -24.627 1 65.98 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . D 4 41.153 -86.568 -24.584 1 67.88 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . D 4 42.038 -85.991 -25.712 1 66.84 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . D 4 41.231 -85.736 -26.967 1 67.16 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . D 4 42.818 -84.815 -25.271 1 68.16 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . D 4 44.095 -84.894 -24.698 1 68.58 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . D 4 44.942 -86.009 -24.483 1 68.21 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . D 4 46.181 -85.833 -23.828 1 69.38 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . D 4 46.543 -84.545 -23.395 1 69.85 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . D 4 45.713 -83.445 -23.597 1 69.49 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . D 4 44.486 -83.612 -24.256 1 69.11 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . D 4 43.401 -82.698 -24.595 1 69.68 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . D 4 42.4 -83.467 -25.214 1 69.11 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . D 4 41.232 -82.879 -25.692 1 69.75 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . D 4 41.079 -81.505 -25.575 1 71.06 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . D 4 42.058 -80.734 -24.963 1 72.26 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . D 4 43.211 -81.323 -24.466 1 71.23 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . D 4 46.295 -82.208 -23.001 1 70.63 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . D 4 47.568 -82.71 -22.459 1 71.74 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . D 4 47.747 -84.075 -22.673 1 71.33 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . D 4 48.733 -84.719 -22.328 1 72.12 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . D 4 46.773 -87.147 -23.688 1 68.63 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . D 4 45.87 -88.056 -24.267 1 66.57 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . D 4 46.131 -89.422 -24.272 1 66.64 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . D 4 47.3 -89.882 -23.678 1 67.59 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . D 4 48.194 -88.996 -23.095 1 68.06 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . D 4 47.94 -87.633 -23.101 1 68.88 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . D 4 44.759 -87.354 -24.746 1 65.99 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . D 4 41.644 -86.141 -23.312 1 70.19 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . D 4 40.782 -85.266 -22.591 1 70.21 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . D 4 40.234 -88.672 -23.65 1 65.66 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . D 4 39.012 -89.191 -24.261 1 66.52 ? C28 STU 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 35 #