data_5T6G
#
_model_server_result.job_id            g9M6-b6mPK67hF2wFFAfLA 
_model_server_result.datetime_utc      '2024-11-22 02:57:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t6g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5T6G 
#
_exptl.entry_id    5T6G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              487.696 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-(octylsulfonyl)-L-alaninamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5T6G 
_cell.length_a            59.576 
_cell.length_b            59.576 
_cell.length_c            357.702 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T6G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 77 1_555 A SG CYS 161 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
covale ? covale1 A SG CYS 146 A CYS 139 1_555 C C30 N40 . A N40 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
covale ? covale2 B SG CYS 146 B CYS 139 1_555 D C30 N40 . B N40 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
#
_chem_comp.formula           'C24 H45 N3 O5 S' 
_chem_comp.formula_weight    487.696 
_chem_comp.id                N40 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-(octylsulfonyl)-L-alaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '3-cyclohexyl-N~2~-(octylsulfonyl)-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide (bound form)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O29 C25 N40 doub 237 n n 
N26 C25 N40 sing 238 n n 
N26 C27 N40 sing 239 n n 
C25 C24 N40 sing 240 n n 
C27 C28 N40 sing 241 n n 
C24 C23 N40 sing 242 n n 
C24 C28 N40 sing 243 n n 
C23 C22 N40 sing 244 n n 
C22 C30 N40 sing 245 n n 
C22 N21 N40 sing 246 n n 
C09 C10 N40 sing 247 n n 
C09 C08 N40 sing 248 n n 
C30 O31 N40 sing 249 n n 
C07 C08 N40 sing 250 n n 
C07 C06 N40 sing 251 n n 
O01 S02 N40 doub 252 n n 
N21 C20 N40 sing 253 n n 
C06 C05 N40 sing 254 n n 
O33 S02 N40 doub 255 n n 
C05 C04 N40 sing 256 n n 
C04 C03 N40 sing 257 n n 
O32 C20 N40 doub 258 n n 
C20 C12 N40 sing 259 n n 
S02 C03 N40 sing 260 n n 
S02 N11 N40 sing 261 n n 
C12 N11 N40 sing 262 n n 
C12 C13 N40 sing 263 n n 
C13 C14 N40 sing 264 n n 
C15 C14 N40 sing 265 n n 
C15 C16 N40 sing 266 n n 
C14 C19 N40 sing 267 n n 
C16 C17 N40 sing 268 n n 
C19 C18 N40 sing 269 n n 
C17 C18 N40 sing 270 n n 
C03 H1 N40 sing 271 n n 
C03 H2 N40 sing 272 n n 
C04 H3 N40 sing 273 n n 
C04 H4 N40 sing 274 n n 
C05 H5 N40 sing 275 n n 
C05 H6 N40 sing 276 n n 
C06 H7 N40 sing 277 n n 
C06 H8 N40 sing 278 n n 
C07 H9 N40 sing 279 n n 
C07 H10 N40 sing 280 n n 
C08 H11 N40 sing 281 n n 
C08 H12 N40 sing 282 n n 
C09 H13 N40 sing 283 n n 
C09 H14 N40 sing 284 n n 
C10 H15 N40 sing 285 n n 
C10 H16 N40 sing 286 n n 
C10 H17 N40 sing 287 n n 
C12 H18 N40 sing 288 n n 
C13 H19 N40 sing 289 n n 
C13 H20 N40 sing 290 n n 
C14 H21 N40 sing 291 n n 
C15 H22 N40 sing 292 n n 
C15 H23 N40 sing 293 n n 
C16 H24 N40 sing 294 n n 
C16 H25 N40 sing 295 n n 
C17 H26 N40 sing 296 n n 
C17 H27 N40 sing 297 n n 
C18 H28 N40 sing 298 n n 
C18 H29 N40 sing 299 n n 
C19 H30 N40 sing 300 n n 
C19 H31 N40 sing 301 n n 
C22 H32 N40 sing 302 n n 
C23 H33 N40 sing 303 n n 
C23 H34 N40 sing 304 n n 
C24 H35 N40 sing 305 n n 
C27 H36 N40 sing 306 n n 
C27 H37 N40 sing 307 n n 
C28 H38 N40 sing 308 n n 
C28 H39 N40 sing 309 n n 
C30 H40 N40 sing 310 n n 
C30 H41 N40 sing 311 n n 
N11 H42 N40 sing 312 n n 
N21 H43 N40 sing 313 n n 
N26 H44 N40 sing 314 n n 
O31 H45 N40 sing 315 n n 
#
_atom_sites.entry_id                     5T6G 
_atom_sites.fract_transf_matrix[1][1]    0.016785 
_atom_sites.fract_transf_matrix[1][2]    0.009691 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019382 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 N40 A 1 201 1 N40 N40 . 
D 2 N40 B 1 201 2 N40 N40 . 
E 3 HOH A 1 301 56 HOH HOH . 
E 3 HOH A 2 302 69 HOH HOH . 
E 3 HOH A 3 303 15 HOH HOH . 
E 3 HOH A 4 304 10 HOH HOH . 
E 3 HOH A 5 305 36 HOH HOH . 
E 3 HOH A 6 306 31 HOH HOH . 
E 3 HOH A 7 307 65 HOH HOH . 
E 3 HOH A 8 308 28 HOH HOH . 
E 3 HOH A 9 309 17 HOH HOH . 
E 3 HOH A 10 310 27 HOH HOH . 
E 3 HOH A 11 311 41 HOH HOH . 
E 3 HOH A 12 312 19 HOH HOH . 
E 3 HOH A 13 313 43 HOH HOH . 
E 3 HOH A 14 314 63 HOH HOH . 
E 3 HOH A 15 315 61 HOH HOH . 
E 3 HOH A 16 316 46 HOH HOH . 
E 3 HOH A 17 317 13 HOH HOH . 
E 3 HOH A 18 318 11 HOH HOH . 
E 3 HOH A 19 319 59 HOH HOH . 
E 3 HOH A 20 320 72 HOH HOH . 
E 3 HOH A 21 321 29 HOH HOH . 
E 3 HOH A 22 322 30 HOH HOH . 
E 3 HOH A 23 323 5 HOH HOH . 
E 3 HOH A 24 324 1 HOH HOH . 
E 3 HOH A 25 325 21 HOH HOH . 
E 3 HOH A 26 326 20 HOH HOH . 
E 3 HOH A 27 327 53 HOH HOH . 
E 3 HOH A 28 328 60 HOH HOH . 
E 3 HOH A 29 329 4 HOH HOH . 
E 3 HOH A 30 330 50 HOH HOH . 
E 3 HOH A 31 331 55 HOH HOH . 
E 3 HOH A 32 332 39 HOH HOH . 
E 3 HOH A 33 333 23 HOH HOH . 
E 3 HOH A 34 334 71 HOH HOH . 
E 3 HOH A 35 335 62 HOH HOH . 
E 3 HOH A 36 336 8 HOH HOH . 
E 3 HOH A 37 337 9 HOH HOH . 
E 3 HOH A 38 338 66 HOH HOH . 
E 3 HOH A 39 339 48 HOH HOH . 
E 3 HOH A 40 340 74 HOH HOH . 
F 3 HOH B 1 301 7 HOH HOH . 
F 3 HOH B 2 302 32 HOH HOH . 
F 3 HOH B 3 303 54 HOH HOH . 
F 3 HOH B 4 304 18 HOH HOH . 
F 3 HOH B 5 305 37 HOH HOH . 
F 3 HOH B 6 306 52 HOH HOH . 
F 3 HOH B 7 307 16 HOH HOH . 
F 3 HOH B 8 308 68 HOH HOH . 
F 3 HOH B 9 309 58 HOH HOH . 
F 3 HOH B 10 310 24 HOH HOH . 
F 3 HOH B 11 311 22 HOH HOH . 
F 3 HOH B 12 312 35 HOH HOH . 
F 3 HOH B 13 313 44 HOH HOH . 
F 3 HOH B 14 314 3 HOH HOH . 
F 3 HOH B 15 315 12 HOH HOH . 
F 3 HOH B 16 316 38 HOH HOH . 
F 3 HOH B 17 317 2 HOH HOH . 
F 3 HOH B 18 318 64 HOH HOH . 
F 3 HOH B 19 319 51 HOH HOH . 
F 3 HOH B 20 320 25 HOH HOH . 
F 3 HOH B 21 321 26 HOH HOH . 
F 3 HOH B 22 322 42 HOH HOH . 
F 3 HOH B 23 323 33 HOH HOH . 
F 3 HOH B 24 324 45 HOH HOH . 
F 3 HOH B 25 325 57 HOH HOH . 
F 3 HOH B 26 326 67 HOH HOH . 
F 3 HOH B 27 327 40 HOH HOH . 
F 3 HOH B 28 328 49 HOH HOH . 
F 3 HOH B 29 329 34 HOH HOH . 
F 3 HOH B 30 330 47 HOH HOH . 
F 3 HOH B 31 331 73 HOH HOH . 
F 3 HOH B 32 332 6 HOH HOH . 
F 3 HOH B 33 333 14 HOH HOH . 
F 3 HOH B 34 334 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C03 N40 . . . D 2 17.098 48.754 -10.222 1 46.65 ? C03 N40 201 B 1 
HETATM 2 C C04 N40 . . . D 2 17.719 49.843 -11.11 1 48.07 ? C04 N40 201 B 1 
HETATM 3 C C05 N40 . . . D 2 19.012 50.453 -10.556 1 40.21 ? C05 N40 201 B 1 
HETATM 4 C C06 N40 . . . D 2 19.898 51.093 -11.644 1 40.97 ? C06 N40 201 B 1 
HETATM 5 C C07 N40 . . . D 2 21.386 51.234 -11.291 1 43.95 ? C07 N40 201 B 1 
HETATM 6 C C12 N40 . . . D 2 16.681 44.868 -10.429 1 35.99 ? C12 N40 201 B 1 
HETATM 7 C C13 N40 . . . D 2 16.685 43.974 -9.189 1 35.37 ? C13 N40 201 B 1 
HETATM 8 C C14 N40 . . . D 2 17.783 44.354 -8.205 1 44.97 ? C14 N40 201 B 1 
HETATM 9 C C15 N40 . . . D 2 19.182 44.146 -8.813 1 38.65 ? C15 N40 201 B 1 
HETATM 10 C C16 N40 . . . D 2 20.291 44.215 -7.767 1 40.55 ? C16 N40 201 B 1 
HETATM 11 C C17 N40 . . . D 2 20.03 43.201 -6.666 1 46.87 ? C17 N40 201 B 1 
HETATM 12 C C18 N40 . . . D 2 18.691 43.483 -6.002 1 47.57 ? C18 N40 201 B 1 
HETATM 13 C C19 N40 . . . D 2 17.526 43.5 -6.978 1 39.19 ? C19 N40 201 B 1 
HETATM 14 C C20 N40 . . . D 2 15.965 44.164 -11.579 1 31.73 ? C20 N40 201 B 1 
HETATM 15 C C22 N40 . . . D 2 15.909 42.773 -13.62 1 33.82 ? C22 N40 201 B 1 
HETATM 16 C C23 N40 . . . D 2 16.242 43.412 -14.98 1 29.96 ? C23 N40 201 B 1 
HETATM 17 C C24 N40 . . . D 2 16.04 44.92 -15.075 1 26.92 ? C24 N40 201 B 1 
HETATM 18 C C25 N40 . . . D 2 16.239 45.362 -16.459 1 26.93 ? C25 N40 201 B 1 
HETATM 19 C C27 N40 . . . D 2 14.179 46.403 -15.761 1 25.73 ? C27 N40 201 B 1 
HETATM 20 C C28 N40 . . . D 2 14.623 45.341 -14.709 1 34.32 ? C28 N40 201 B 1 
HETATM 21 C C30 N40 . . . D 2 16.183 41.269 -13.63 1 36.43 ? C30 N40 201 B 1 
HETATM 22 N N11 N40 . . . D 2 16.013 46.11 -10.089 1 43.82 ? N11 N40 201 B 1 
HETATM 23 N N21 N40 . . . D 2 16.692 43.398 -12.559 1 30.54 ? N21 N40 201 B 1 
HETATM 24 N N26 N40 . . . D 2 15.103 46.269 -16.857 1 23.72 ? N26 N40 201 B 1 
HETATM 25 O O01 N40 . . . D 2 16.91 46.994 -12.364 1 29.2 ? O01 N40 201 B 1 
HETATM 26 O O29 N40 . . . D 2 17.141 45.075 -17.157 1 31.48 ? O29 N40 201 B 1 
HETATM 27 O O31 N40 . . . D 2 15.669 40.721 -12.444 1 28.11 ? O31 N40 201 B 1 
HETATM 28 O O32 N40 . . . D 2 14.789 44.235 -11.712 1 34.75 ? O32 N40 201 B 1 
HETATM 29 O O33 N40 . . . D 2 14.958 47.895 -11.698 1 44.41 ? O33 N40 201 B 1 
HETATM 30 S S02 N40 . . . D 2 16.22 47.429 -11.144 1 42.97 ? S02 N40 201 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#