data_5T6Q # _model_server_result.job_id yXKvd4N-9MU0yFm4Kg_PLQ _model_server_result.datetime_utc '2024-11-09 01:42:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 5T6Q # _exptl.entry_id 5T6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T6Q _cell.length_a 109.678 _cell.length_b 109.678 _cell.length_c 125.817 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE2 GLU 293 A GLU 310 1_555 B CMD HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? metalc ? metalc1 A SG CYS 431 A CYS 448 1_555 B FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5T6Q _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0.005264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 OCT A 1 601 601 OCT OCT . D 4 HOH A 1 701 705 HOH HOH . D 4 HOH A 2 702 703 HOH HOH . D 4 HOH A 3 703 702 HOH HOH . D 4 HOH A 4 704 709 HOH HOH . D 4 HOH A 5 705 706 HOH HOH . D 4 HOH A 6 706 701 HOH HOH . D 4 HOH A 7 707 704 HOH HOH . D 4 HOH A 8 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 66.4 21.676 54.775 1 46.17 ? CHA HEM 600 A 1 HETATM 2 C CHB HEM . . . B 2 65.322 24.65 58.458 1 45.5 ? CHB HEM 600 A 1 HETATM 3 C CHC HEM . . . B 2 60.615 23.432 57.968 1 52.47 ? CHC HEM 600 A 1 HETATM 4 C CHD HEM . . . B 2 62.184 19.48 55.655 1 37.27 ? CHD HEM 600 A 1 HETATM 5 C C1A HEM . . . B 2 66.476 22.678 55.774 1 37.73 ? C1A HEM 600 A 1 HETATM 6 C C2A HEM . . . B 2 67.751 23.337 56.161 1 37.29 ? C2A HEM 600 A 1 HETATM 7 C C3A HEM . . . B 2 67.452 24.141 57.219 1 43.21 ? C3A HEM 600 A 1 HETATM 8 C C4A HEM . . . B 2 66.01 23.964 57.519 1 40.31 ? C4A HEM 600 A 1 HETATM 9 C CMA HEM . . . B 2 68.351 25.053 57.955 1 35.48 ? CMA HEM 600 A 1 HETATM 10 C CAA HEM . . . B 2 69.08 23.001 55.595 1 37.89 ? CAA HEM 600 A 1 HETATM 11 C CBA HEM . . . B 2 69.687 21.817 56.354 1 42.59 ? CBA HEM 600 A 1 HETATM 12 C CGA HEM . . . B 2 71.247 21.779 56.25 1 56.76 ? CGA HEM 600 A 1 HETATM 13 O O1A HEM . . . B 2 71.769 20.753 56.727 1 40.51 ? O1A HEM 600 A 1 HETATM 14 O O2A HEM . . . B 2 71.813 22.77 55.75 1 59 ? O2A HEM 600 A 1 HETATM 15 C C1B HEM . . . B 2 63.925 24.567 58.646 1 44.88 ? C1B HEM 600 A 1 HETATM 16 C C2B HEM . . . B 2 63.187 25.46 59.521 1 50.41 ? C2B HEM 600 A 1 HETATM 17 C C3B HEM . . . B 2 61.843 25.166 59.351 1 46.66 ? C3B HEM 600 A 1 HETATM 18 C C4B HEM . . . B 2 61.792 24.096 58.36 1 44.57 ? C4B HEM 600 A 1 HETATM 19 C CMB HEM . . . B 2 63.799 26.508 60.367 1 38.37 ? CMB HEM 600 A 1 HETATM 20 C CAB HEM . . . B 2 60.673 25.726 59.999 1 40.54 ? CAB HEM 600 A 1 HETATM 21 C CBB HEM . . . B 2 60.673 26.446 61.126 1 43.77 ? CBB HEM 600 A 1 HETATM 22 C C1C HEM . . . B 2 60.621 22.295 57.223 1 35.75 ? C1C HEM 600 A 1 HETATM 23 C C2C HEM . . . B 2 59.445 21.433 56.992 1 38.36 ? C2C HEM 600 A 1 HETATM 24 C C3C HEM . . . B 2 59.905 20.282 56.412 1 41.69 ? C3C HEM 600 A 1 HETATM 25 C C4C HEM . . . B 2 61.375 20.433 56.281 1 39.62 ? C4C HEM 600 A 1 HETATM 26 C CMC HEM . . . B 2 58.068 21.773 57.404 1 33.7 ? CMC HEM 600 A 1 HETATM 27 C CAC HEM . . . B 2 59.187 19.11 55.941 1 39.63 ? CAC HEM 600 A 1 HETATM 28 C CBC HEM . . . B 2 57.951 19.128 55.435 1 36.27 ? CBC HEM 600 A 1 HETATM 29 C C1D HEM . . . B 2 63.478 19.751 55.294 1 46.08 ? C1D HEM 600 A 1 HETATM 30 C C2D HEM . . . B 2 64.282 18.837 54.447 1 40.99 ? C2D HEM 600 A 1 HETATM 31 C C3D HEM . . . B 2 65.374 19.521 54.006 1 39.86 ? C3D HEM 600 A 1 HETATM 32 C C4D HEM . . . B 2 65.331 20.846 54.699 1 40.69 ? C4D HEM 600 A 1 HETATM 33 C CMD HEM . . . B 2 63.917 17.422 54.232 1 34.67 ? CMD HEM 600 A 1 HETATM 34 C CAD HEM . . . B 2 66.441 19.089 53.079 1 36.49 ? CAD HEM 600 A 1 HETATM 35 C CBD HEM . . . B 2 66.174 19.598 51.663 1 46.7 ? CBD HEM 600 A 1 HETATM 36 C CGD HEM . . . B 2 67.225 19.02 50.646 1 55.3 ? CGD HEM 600 A 1 HETATM 37 O O1D HEM . . . B 2 66.881 19.108 49.452 1 62.21 ? O1D HEM 600 A 1 HETATM 38 O O2D HEM . . . B 2 68.264 18.538 51.121 1 52.25 ? O2D HEM 600 A 1 HETATM 39 N NA HEM . . . B 2 65.44 23 56.599 1 38.52 ? NA HEM 600 A 1 HETATM 40 N NB HEM . . . B 2 63.069 23.723 57.936 1 40.04 ? NB HEM 600 A 1 HETATM 41 N NC HEM . . . B 2 61.818 21.654 56.726 1 42.19 ? NC HEM 600 A 1 HETATM 42 N ND HEM . . . B 2 64.146 20.973 55.508 1 36.63 ? ND HEM 600 A 1 HETATM 43 FE FE HEM . . . B 2 63.62 22.366 56.693 1 43.57 3 FE HEM 600 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #