data_5T6Q # _model_server_result.job_id cXO7GGYPHc3ao1QCfTz2JA _model_server_result.datetime_utc '2024-11-09 01:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t6q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5T6Q # _exptl.entry_id 5T6Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T6Q _cell.length_a 109.678 _cell.length_b 109.678 _cell.length_c 125.817 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T6Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OE2 GLU 293 A GLU 310 1_555 B CMD HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? metalc ? metalc1 A SG CYS 431 A CYS 448 1_555 B FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 319 n n C1 H11 OCT sing 320 n n C1 H12 OCT sing 321 n n C1 H13 OCT sing 322 n n C2 C3 OCT sing 323 n n C2 H21 OCT sing 324 n n C2 H22 OCT sing 325 n n C3 C4 OCT sing 326 n n C3 H31 OCT sing 327 n n C3 H32 OCT sing 328 n n C4 C5 OCT sing 329 n n C4 H41 OCT sing 330 n n C4 H42 OCT sing 331 n n C5 C6 OCT sing 332 n n C5 H51 OCT sing 333 n n C5 H52 OCT sing 334 n n C6 C7 OCT sing 335 n n C6 H61 OCT sing 336 n n C6 H62 OCT sing 337 n n C7 C8 OCT sing 338 n n C7 H71 OCT sing 339 n n C7 H72 OCT sing 340 n n C8 H81 OCT sing 341 n n C8 H82 OCT sing 342 n n C8 H83 OCT sing 343 n n # _atom_sites.entry_id 5T6Q _atom_sites.fract_transf_matrix[1][1] 0.009118 _atom_sites.fract_transf_matrix[1][2] 0.005264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 OCT A 1 601 601 OCT OCT . D 4 HOH A 1 701 705 HOH HOH . D 4 HOH A 2 702 703 HOH HOH . D 4 HOH A 3 703 702 HOH HOH . D 4 HOH A 4 704 709 HOH HOH . D 4 HOH A 5 705 706 HOH HOH . D 4 HOH A 6 706 701 HOH HOH . D 4 HOH A 7 707 704 HOH HOH . D 4 HOH A 8 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . C 3 72.939 19.212 61.725 1 41.45 ? C1 OCT 601 A 1 HETATM 2 C C2 OCT . . . C 3 71.491 19.574 62.047 1 44.95 ? C2 OCT 601 A 1 HETATM 3 C C3 OCT . . . C 3 70.651 19.513 60.773 1 45.82 ? C3 OCT 601 A 1 HETATM 4 C C4 OCT . . . C 3 69.181 19.76 61.126 1 44.62 ? C4 OCT 601 A 1 HETATM 5 C C5 OCT . . . C 3 68.391 19.969 59.834 1 48.2 ? C5 OCT 601 A 1 HETATM 6 C C6 OCT . . . C 3 66.897 19.78 60.113 1 56.59 ? C6 OCT 601 A 1 HETATM 7 C C7 OCT . . . C 3 66.11 20.151 58.845 1 45.7 ? C7 OCT 601 A 1 HETATM 8 C C8 OCT . . . C 3 64.64 20.322 59.179 1 35.15 ? C8 OCT 601 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #