data_5T6W
#
_model_server_result.job_id            vc_Hxx2bslkExi_iDxB4sA 
_model_server_result.datetime_utc      '2024-11-01 21:31:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t6w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5T6W 
#
_exptl.entry_id    5T6W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T6W 
_cell.length_a            50.79 
_cell.length_b            81.18 
_cell.length_c            109.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T6W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5T6W 
_atom_sites.fract_transf_matrix[1][1]    0.019689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012318 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009108 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 301 1 GOL GOL . 
E 5 HOH A 1 401 111 HOH HOH . 
E 5 HOH A 2 402 205 HOH HOH . 
E 5 HOH A 3 403 71 HOH HOH . 
E 5 HOH A 4 404 66 HOH HOH . 
E 5 HOH A 5 405 56 HOH HOH . 
E 5 HOH A 6 406 131 HOH HOH . 
E 5 HOH A 7 407 122 HOH HOH . 
E 5 HOH A 8 408 196 HOH HOH . 
E 5 HOH A 9 409 121 HOH HOH . 
E 5 HOH A 10 410 100 HOH HOH . 
E 5 HOH A 11 411 19 HOH HOH . 
E 5 HOH A 12 412 182 HOH HOH . 
E 5 HOH A 13 413 41 HOH HOH . 
E 5 HOH A 14 414 132 HOH HOH . 
E 5 HOH A 15 415 27 HOH HOH . 
E 5 HOH A 16 416 176 HOH HOH . 
E 5 HOH A 17 417 58 HOH HOH . 
E 5 HOH A 18 418 8 HOH HOH . 
E 5 HOH A 19 419 128 HOH HOH . 
E 5 HOH A 20 420 91 HOH HOH . 
E 5 HOH A 21 421 209 HOH HOH . 
E 5 HOH A 22 422 142 HOH HOH . 
E 5 HOH A 23 423 103 HOH HOH . 
E 5 HOH A 24 424 18 HOH HOH . 
E 5 HOH A 25 425 137 HOH HOH . 
E 5 HOH A 26 426 15 HOH HOH . 
E 5 HOH A 27 427 6 HOH HOH . 
E 5 HOH A 28 428 119 HOH HOH . 
E 5 HOH A 29 429 74 HOH HOH . 
E 5 HOH A 30 430 70 HOH HOH . 
E 5 HOH A 31 431 135 HOH HOH . 
E 5 HOH A 32 432 95 HOH HOH . 
E 5 HOH A 33 433 127 HOH HOH . 
E 5 HOH A 34 434 99 HOH HOH . 
E 5 HOH A 35 435 102 HOH HOH . 
E 5 HOH A 36 436 17 HOH HOH . 
E 5 HOH A 37 437 49 HOH HOH . 
E 5 HOH A 38 438 173 HOH HOH . 
E 5 HOH A 39 439 134 HOH HOH . 
E 5 HOH A 40 440 35 HOH HOH . 
E 5 HOH A 41 441 117 HOH HOH . 
E 5 HOH A 42 442 29 HOH HOH . 
E 5 HOH A 43 443 65 HOH HOH . 
E 5 HOH A 44 444 34 HOH HOH . 
E 5 HOH A 45 445 208 HOH HOH . 
E 5 HOH A 46 446 104 HOH HOH . 
E 5 HOH A 47 447 21 HOH HOH . 
E 5 HOH A 48 448 3 HOH HOH . 
E 5 HOH A 49 449 90 HOH HOH . 
E 5 HOH A 50 450 73 HOH HOH . 
E 5 HOH A 51 451 118 HOH HOH . 
E 5 HOH A 52 452 11 HOH HOH . 
E 5 HOH A 53 453 2 HOH HOH . 
E 5 HOH A 54 454 37 HOH HOH . 
E 5 HOH A 55 455 60 HOH HOH . 
E 5 HOH A 56 456 50 HOH HOH . 
E 5 HOH A 57 457 5 HOH HOH . 
E 5 HOH A 58 458 14 HOH HOH . 
E 5 HOH A 59 459 75 HOH HOH . 
E 5 HOH A 60 460 43 HOH HOH . 
E 5 HOH A 61 461 133 HOH HOH . 
E 5 HOH A 62 462 92 HOH HOH . 
E 5 HOH A 63 463 160 HOH HOH . 
E 5 HOH A 64 464 124 HOH HOH . 
E 5 HOH A 65 465 210 HOH HOH . 
E 5 HOH A 66 466 52 HOH HOH . 
E 5 HOH A 67 467 72 HOH HOH . 
E 5 HOH A 68 468 106 HOH HOH . 
E 5 HOH A 69 469 155 HOH HOH . 
E 5 HOH A 70 470 204 HOH HOH . 
E 5 HOH A 71 471 1 HOH HOH . 
E 5 HOH A 72 472 63 HOH HOH . 
E 5 HOH A 73 473 51 HOH HOH . 
E 5 HOH A 74 474 150 HOH HOH . 
E 5 HOH A 75 475 55 HOH HOH . 
E 5 HOH A 76 476 199 HOH HOH . 
E 5 HOH A 77 477 62 HOH HOH . 
E 5 HOH A 78 478 33 HOH HOH . 
E 5 HOH A 79 479 158 HOH HOH . 
E 5 HOH A 80 480 32 HOH HOH . 
E 5 HOH A 81 481 141 HOH HOH . 
E 5 HOH A 82 482 31 HOH HOH . 
E 5 HOH A 83 483 96 HOH HOH . 
E 5 HOH A 84 484 7 HOH HOH . 
E 5 HOH A 85 485 184 HOH HOH . 
E 5 HOH A 86 486 186 HOH HOH . 
E 5 HOH A 87 487 109 HOH HOH . 
E 5 HOH A 88 488 207 HOH HOH . 
E 5 HOH A 89 489 178 HOH HOH . 
E 5 HOH A 90 490 88 HOH HOH . 
E 5 HOH A 91 491 69 HOH HOH . 
E 5 HOH A 92 492 10 HOH HOH . 
E 5 HOH A 93 493 13 HOH HOH . 
E 5 HOH A 94 494 140 HOH HOH . 
E 5 HOH A 95 495 126 HOH HOH . 
E 5 HOH A 96 496 94 HOH HOH . 
E 5 HOH A 97 497 115 HOH HOH . 
E 5 HOH A 98 498 145 HOH HOH . 
E 5 HOH A 99 499 12 HOH HOH . 
E 5 HOH A 100 500 120 HOH HOH . 
E 5 HOH A 101 501 179 HOH HOH . 
E 5 HOH A 102 502 24 HOH HOH . 
E 5 HOH A 103 503 152 HOH HOH . 
E 5 HOH A 104 504 30 HOH HOH . 
E 5 HOH A 105 505 185 HOH HOH . 
E 5 HOH A 106 506 20 HOH HOH . 
E 5 HOH A 107 507 46 HOH HOH . 
E 5 HOH A 108 508 107 HOH HOH . 
E 5 HOH A 109 509 54 HOH HOH . 
E 5 HOH A 110 510 214 HOH HOH . 
E 5 HOH A 111 511 57 HOH HOH . 
E 5 HOH A 112 512 138 HOH HOH . 
E 5 HOH A 113 513 180 HOH HOH . 
E 5 HOH A 114 514 9 HOH HOH . 
E 5 HOH A 115 515 130 HOH HOH . 
E 5 HOH A 116 516 47 HOH HOH . 
E 5 HOH A 117 517 113 HOH HOH . 
E 5 HOH A 118 518 147 HOH HOH . 
E 5 HOH A 119 519 28 HOH HOH . 
E 5 HOH A 120 520 80 HOH HOH . 
E 5 HOH A 121 521 149 HOH HOH . 
E 5 HOH A 122 522 143 HOH HOH . 
E 5 HOH A 123 523 200 HOH HOH . 
E 5 HOH A 124 524 206 HOH HOH . 
E 5 HOH A 125 525 188 HOH HOH . 
E 5 HOH A 126 526 87 HOH HOH . 
E 5 HOH A 127 527 151 HOH HOH . 
E 5 HOH A 128 528 59 HOH HOH . 
E 5 HOH A 129 529 105 HOH HOH . 
E 5 HOH A 130 530 101 HOH HOH . 
E 5 HOH A 131 531 116 HOH HOH . 
E 5 HOH A 132 532 211 HOH HOH . 
E 5 HOH A 133 533 181 HOH HOH . 
E 5 HOH A 134 534 198 HOH HOH . 
E 5 HOH A 135 535 212 HOH HOH . 
E 5 HOH A 136 536 98 HOH HOH . 
E 5 HOH A 137 537 213 HOH HOH . 
E 5 HOH A 138 538 201 HOH HOH . 
E 5 HOH A 139 539 81 HOH HOH . 
E 5 HOH A 140 540 148 HOH HOH . 
E 5 HOH A 141 541 112 HOH HOH . 
E 5 HOH A 142 542 123 HOH HOH . 
E 5 HOH A 143 543 187 HOH HOH . 
E 5 HOH A 144 544 48 HOH HOH . 
E 5 HOH A 145 545 190 HOH HOH . 
E 5 HOH A 146 546 85 HOH HOH . 
E 5 HOH A 147 547 129 HOH HOH . 
E 5 HOH A 148 548 84 HOH HOH . 
E 5 HOH A 149 549 25 HOH HOH . 
E 5 HOH A 150 550 77 HOH HOH . 
E 5 HOH A 151 551 161 HOH HOH . 
E 5 HOH A 152 552 53 HOH HOH . 
E 5 HOH A 153 553 174 HOH HOH . 
E 5 HOH A 154 554 167 HOH HOH . 
E 5 HOH A 155 555 159 HOH HOH . 
E 5 HOH A 156 556 38 HOH HOH . 
E 5 HOH A 157 557 86 HOH HOH . 
E 5 HOH A 158 558 175 HOH HOH . 
E 5 HOH A 159 559 136 HOH HOH . 
E 5 HOH A 160 560 164 HOH HOH . 
E 5 HOH A 161 561 144 HOH HOH . 
E 5 HOH A 162 562 114 HOH HOH . 
E 5 HOH A 163 563 202 HOH HOH . 
E 5 HOH A 164 564 195 HOH HOH . 
E 5 HOH A 165 565 146 HOH HOH . 
E 5 HOH A 166 566 154 HOH HOH . 
F 5 HOH B 1 101 39 HOH HOH . 
F 5 HOH B 2 102 4 HOH HOH . 
F 5 HOH B 3 103 165 HOH HOH . 
F 5 HOH B 4 104 40 HOH HOH . 
F 5 HOH B 5 105 183 HOH HOH . 
F 5 HOH B 6 106 169 HOH HOH . 
F 5 HOH B 7 107 67 HOH HOH . 
F 5 HOH B 8 108 68 HOH HOH . 
F 5 HOH B 9 109 45 HOH HOH . 
F 5 HOH B 10 110 197 HOH HOH . 
F 5 HOH B 11 111 16 HOH HOH . 
F 5 HOH B 12 112 189 HOH HOH . 
F 5 HOH B 13 113 36 HOH HOH . 
F 5 HOH B 14 114 42 HOH HOH . 
F 5 HOH B 15 115 44 HOH HOH . 
F 5 HOH B 16 116 192 HOH HOH . 
F 5 HOH B 17 117 162 HOH HOH . 
F 5 HOH B 18 118 168 HOH HOH . 
F 5 HOH B 19 119 64 HOH HOH . 
F 5 HOH B 20 120 163 HOH HOH . 
F 5 HOH B 21 121 170 HOH HOH . 
F 5 HOH B 22 122 82 HOH HOH . 
F 5 HOH B 23 123 76 HOH HOH . 
F 5 HOH B 24 124 23 HOH HOH . 
F 5 HOH B 25 125 156 HOH HOH . 
F 5 HOH B 26 126 194 HOH HOH . 
F 5 HOH B 27 127 22 HOH HOH . 
F 5 HOH B 28 128 191 HOH HOH . 
F 5 HOH B 29 129 26 HOH HOH . 
F 5 HOH B 30 130 171 HOH HOH . 
F 5 HOH B 31 131 166 HOH HOH . 
F 5 HOH B 32 132 78 HOH HOH . 
F 5 HOH B 33 133 193 HOH HOH . 
F 5 HOH B 34 134 157 HOH HOH . 
F 5 HOH B 35 135 172 HOH HOH . 
F 5 HOH B 36 136 177 HOH HOH . 
F 5 HOH B 37 137 79 HOH HOH . 
F 5 HOH B 38 138 83 HOH HOH . 
G 5 HOH C 1 101 125 HOH HOH . 
G 5 HOH C 2 102 203 HOH HOH . 
G 5 HOH C 3 103 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -14.981 12.882 -21.387 1 44.86 ? C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . D 4 -15.501 12.264 -20.229 1 45.49 ? O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . D 4 -13.461 12.954 -21.341 1 47.45 ? C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . D 4 -12.932 11.647 -21.382 1 40.51 ? O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . D 4 -12.993 13.745 -22.557 1 46.9 ? C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . D 4 -13.29 15.109 -22.374 1 43.46 ? O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#