data_5T7U
#
_model_server_result.job_id            H5zRFRzqgFqgk_tPaRg9Mw 
_model_server_result.datetime_utc      '2024-11-04 22:42:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t7u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5T7U 
#
_exptl.entry_id    5T7U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T7U 
_cell.length_a            47.4 
_cell.length_b            50.3 
_cell.length_c            69.39 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T7U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 74 A GLY 74 1_555 A N CME 75 A CME 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C CME 75 A CME 75 1_555 A N ILE 76 A ILE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
metalc ? metalc1 D NA NA . A NA 203 1_555 F O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? 
metalc ? metalc2 D NA NA . A NA 203 1_555 F O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc3 D NA NA . A NA 203 1_555 F O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 150 n n 
C1 C2 GOL sing 151 n n 
C1 H11 GOL sing 152 n n 
C1 H12 GOL sing 153 n n 
O1 HO1 GOL sing 154 n n 
C2 O2 GOL sing 155 n n 
C2 C3 GOL sing 156 n n 
C2 H2 GOL sing 157 n n 
O2 HO2 GOL sing 158 n n 
C3 O3 GOL sing 159 n n 
C3 H31 GOL sing 160 n n 
C3 H32 GOL sing 161 n n 
O3 HO3 GOL sing 162 n n 
#
_atom_sites.entry_id                     5T7U 
_atom_sites.fract_transf_matrix[1][1]    0.021097 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 2 GOL A 1 202 2 GOL GOL . 
D 3 NA A 1 203 1 NA NA . 
E 4 CL A 1 204 1 CL CL . 
F 5 HOH A 1 301 315 HOH HOH . 
F 5 HOH A 2 302 144 HOH HOH . 
F 5 HOH A 3 303 242 HOH HOH . 
F 5 HOH A 4 304 155 HOH HOH . 
F 5 HOH A 5 305 270 HOH HOH . 
F 5 HOH A 6 306 158 HOH HOH . 
F 5 HOH A 7 307 32 HOH HOH . 
F 5 HOH A 8 308 313 HOH HOH . 
F 5 HOH A 9 309 254 HOH HOH . 
F 5 HOH A 10 310 306 HOH HOH . 
F 5 HOH A 11 311 239 HOH HOH . 
F 5 HOH A 12 312 126 HOH HOH . 
F 5 HOH A 13 313 197 HOH HOH . 
F 5 HOH A 14 314 267 HOH HOH . 
F 5 HOH A 15 315 71 HOH HOH . 
F 5 HOH A 16 316 6 HOH HOH . 
F 5 HOH A 17 317 217 HOH HOH . 
F 5 HOH A 18 318 164 HOH HOH . 
F 5 HOH A 19 319 75 HOH HOH . 
F 5 HOH A 20 320 96 HOH HOH . 
F 5 HOH A 21 321 165 HOH HOH . 
F 5 HOH A 22 322 81 HOH HOH . 
F 5 HOH A 23 323 171 HOH HOH . 
F 5 HOH A 24 324 120 HOH HOH . 
F 5 HOH A 25 325 106 HOH HOH . 
F 5 HOH A 26 326 244 HOH HOH . 
F 5 HOH A 27 327 322 HOH HOH . 
F 5 HOH A 28 328 40 HOH HOH . 
F 5 HOH A 29 329 59 HOH HOH . 
F 5 HOH A 30 330 190 HOH HOH . 
F 5 HOH A 31 331 186 HOH HOH . 
F 5 HOH A 32 332 101 HOH HOH . 
F 5 HOH A 33 333 311 HOH HOH . 
F 5 HOH A 34 334 66 HOH HOH . 
F 5 HOH A 35 335 236 HOH HOH . 
F 5 HOH A 36 336 183 HOH HOH . 
F 5 HOH A 37 337 4 HOH HOH . 
F 5 HOH A 38 338 92 HOH HOH . 
F 5 HOH A 39 339 172 HOH HOH . 
F 5 HOH A 40 340 163 HOH HOH . 
F 5 HOH A 41 341 86 HOH HOH . 
F 5 HOH A 42 342 188 HOH HOH . 
F 5 HOH A 43 343 295 HOH HOH . 
F 5 HOH A 44 344 237 HOH HOH . 
F 5 HOH A 45 345 93 HOH HOH . 
F 5 HOH A 46 346 305 HOH HOH . 
F 5 HOH A 47 347 235 HOH HOH . 
F 5 HOH A 48 348 110 HOH HOH . 
F 5 HOH A 49 349 88 HOH HOH . 
F 5 HOH A 50 350 3 HOH HOH . 
F 5 HOH A 51 351 194 HOH HOH . 
F 5 HOH A 52 352 54 HOH HOH . 
F 5 HOH A 53 353 82 HOH HOH . 
F 5 HOH A 54 354 64 HOH HOH . 
F 5 HOH A 55 355 156 HOH HOH . 
F 5 HOH A 56 356 204 HOH HOH . 
F 5 HOH A 57 357 41 HOH HOH . 
F 5 HOH A 58 358 25 HOH HOH . 
F 5 HOH A 59 359 48 HOH HOH . 
F 5 HOH A 60 360 95 HOH HOH . 
F 5 HOH A 61 361 91 HOH HOH . 
F 5 HOH A 62 362 248 HOH HOH . 
F 5 HOH A 63 363 12 HOH HOH . 
F 5 HOH A 64 364 68 HOH HOH . 
F 5 HOH A 65 365 28 HOH HOH . 
F 5 HOH A 66 366 97 HOH HOH . 
F 5 HOH A 67 367 260 HOH HOH . 
F 5 HOH A 68 368 84 HOH HOH . 
F 5 HOH A 69 369 5 HOH HOH . 
F 5 HOH A 70 370 153 HOH HOH . 
F 5 HOH A 71 371 83 HOH HOH . 
F 5 HOH A 72 372 55 HOH HOH . 
F 5 HOH A 73 373 34 HOH HOH . 
F 5 HOH A 74 374 170 HOH HOH . 
F 5 HOH A 75 375 38 HOH HOH . 
F 5 HOH A 76 376 50 HOH HOH . 
F 5 HOH A 77 377 62 HOH HOH . 
F 5 HOH A 78 378 52 HOH HOH . 
F 5 HOH A 79 379 9 HOH HOH . 
F 5 HOH A 80 380 189 HOH HOH . 
F 5 HOH A 81 381 277 HOH HOH . 
F 5 HOH A 82 382 130 HOH HOH . 
F 5 HOH A 83 383 154 HOH HOH . 
F 5 HOH A 84 384 121 HOH HOH . 
F 5 HOH A 85 385 76 HOH HOH . 
F 5 HOH A 86 386 58 HOH HOH . 
F 5 HOH A 87 387 99 HOH HOH . 
F 5 HOH A 88 388 73 HOH HOH . 
F 5 HOH A 89 389 102 HOH HOH . 
F 5 HOH A 90 390 138 HOH HOH . 
F 5 HOH A 91 391 23 HOH HOH . 
F 5 HOH A 92 392 90 HOH HOH . 
F 5 HOH A 93 393 108 HOH HOH . 
F 5 HOH A 94 394 255 HOH HOH . 
F 5 HOH A 95 395 249 HOH HOH . 
F 5 HOH A 96 396 141 HOH HOH . 
F 5 HOH A 97 397 104 HOH HOH . 
F 5 HOH A 98 398 10 HOH HOH . 
F 5 HOH A 99 399 317 HOH HOH . 
F 5 HOH A 100 400 176 HOH HOH . 
F 5 HOH A 101 401 49 HOH HOH . 
F 5 HOH A 102 402 160 HOH HOH . 
F 5 HOH A 103 403 39 HOH HOH . 
F 5 HOH A 104 404 272 HOH HOH . 
F 5 HOH A 105 405 60 HOH HOH . 
F 5 HOH A 106 406 56 HOH HOH . 
F 5 HOH A 107 407 17 HOH HOH . 
F 5 HOH A 108 408 80 HOH HOH . 
F 5 HOH A 109 409 118 HOH HOH . 
F 5 HOH A 110 410 107 HOH HOH . 
F 5 HOH A 111 411 113 HOH HOH . 
F 5 HOH A 112 412 51 HOH HOH . 
F 5 HOH A 113 413 72 HOH HOH . 
F 5 HOH A 114 414 103 HOH HOH . 
F 5 HOH A 115 415 184 HOH HOH . 
F 5 HOH A 116 416 159 HOH HOH . 
F 5 HOH A 117 417 11 HOH HOH . 
F 5 HOH A 118 418 42 HOH HOH . 
F 5 HOH A 119 419 8 HOH HOH . 
F 5 HOH A 120 420 21 HOH HOH . 
F 5 HOH A 121 421 87 HOH HOH . 
F 5 HOH A 122 422 125 HOH HOH . 
F 5 HOH A 123 423 27 HOH HOH . 
F 5 HOH A 124 424 33 HOH HOH . 
F 5 HOH A 125 425 1 HOH HOH . 
F 5 HOH A 126 426 78 HOH HOH . 
F 5 HOH A 127 427 129 HOH HOH . 
F 5 HOH A 128 428 207 HOH HOH . 
F 5 HOH A 129 429 70 HOH HOH . 
F 5 HOH A 130 430 228 HOH HOH . 
F 5 HOH A 131 431 290 HOH HOH . 
F 5 HOH A 132 432 2 HOH HOH . 
F 5 HOH A 133 433 24 HOH HOH . 
F 5 HOH A 134 434 26 HOH HOH . 
F 5 HOH A 135 435 18 HOH HOH . 
F 5 HOH A 136 436 15 HOH HOH . 
F 5 HOH A 137 437 47 HOH HOH . 
F 5 HOH A 138 438 35 HOH HOH . 
F 5 HOH A 139 439 14 HOH HOH . 
F 5 HOH A 140 440 53 HOH HOH . 
F 5 HOH A 141 441 31 HOH HOH . 
F 5 HOH A 142 442 22 HOH HOH . 
F 5 HOH A 143 443 19 HOH HOH . 
F 5 HOH A 144 444 44 HOH HOH . 
F 5 HOH A 145 445 304 HOH HOH . 
F 5 HOH A 146 446 67 HOH HOH . 
F 5 HOH A 147 447 250 HOH HOH . 
F 5 HOH A 148 448 166 HOH HOH . 
F 5 HOH A 149 449 79 HOH HOH . 
F 5 HOH A 150 450 275 HOH HOH . 
F 5 HOH A 151 451 65 HOH HOH . 
F 5 HOH A 152 452 61 HOH HOH . 
F 5 HOH A 153 453 312 HOH HOH . 
F 5 HOH A 154 454 7 HOH HOH . 
F 5 HOH A 155 455 30 HOH HOH . 
F 5 HOH A 156 456 185 HOH HOH . 
F 5 HOH A 157 457 196 HOH HOH . 
F 5 HOH A 158 458 16 HOH HOH . 
F 5 HOH A 159 459 178 HOH HOH . 
F 5 HOH A 160 460 257 HOH HOH . 
F 5 HOH A 161 461 206 HOH HOH . 
F 5 HOH A 162 462 146 HOH HOH . 
F 5 HOH A 163 463 291 HOH HOH . 
F 5 HOH A 164 464 127 HOH HOH . 
F 5 HOH A 165 465 45 HOH HOH . 
F 5 HOH A 166 466 162 HOH HOH . 
F 5 HOH A 167 467 29 HOH HOH . 
F 5 HOH A 168 468 320 HOH HOH . 
F 5 HOH A 169 469 285 HOH HOH . 
F 5 HOH A 170 470 246 HOH HOH . 
F 5 HOH A 171 471 151 HOH HOH . 
F 5 HOH A 172 472 233 HOH HOH . 
F 5 HOH A 173 473 264 HOH HOH . 
F 5 HOH A 174 474 245 HOH HOH . 
F 5 HOH A 175 475 94 HOH HOH . 
F 5 HOH A 176 476 230 HOH HOH . 
F 5 HOH A 177 477 57 HOH HOH . 
F 5 HOH A 178 478 139 HOH HOH . 
F 5 HOH A 179 479 173 HOH HOH . 
F 5 HOH A 180 480 234 HOH HOH . 
F 5 HOH A 181 481 299 HOH HOH . 
F 5 HOH A 182 482 314 HOH HOH . 
F 5 HOH A 183 483 273 HOH HOH . 
F 5 HOH A 184 484 205 HOH HOH . 
F 5 HOH A 185 485 201 HOH HOH . 
F 5 HOH A 186 486 174 HOH HOH . 
F 5 HOH A 187 487 310 HOH HOH . 
F 5 HOH A 188 488 318 HOH HOH . 
F 5 HOH A 189 489 175 HOH HOH . 
F 5 HOH A 190 490 195 HOH HOH . 
F 5 HOH A 191 491 227 HOH HOH . 
F 5 HOH A 192 492 210 HOH HOH . 
F 5 HOH A 193 493 43 HOH HOH . 
F 5 HOH A 194 494 85 HOH HOH . 
F 5 HOH A 195 495 167 HOH HOH . 
F 5 HOH A 196 496 323 HOH HOH . 
F 5 HOH A 197 497 216 HOH HOH . 
F 5 HOH A 198 498 265 HOH HOH . 
F 5 HOH A 199 499 177 HOH HOH . 
F 5 HOH A 200 500 157 HOH HOH . 
F 5 HOH A 201 501 286 HOH HOH . 
F 5 HOH A 202 502 208 HOH HOH . 
F 5 HOH A 203 503 243 HOH HOH . 
F 5 HOH A 204 504 77 HOH HOH . 
F 5 HOH A 205 505 132 HOH HOH . 
F 5 HOH A 206 506 123 HOH HOH . 
F 5 HOH A 207 507 321 HOH HOH . 
F 5 HOH A 208 508 98 HOH HOH . 
F 5 HOH A 209 509 89 HOH HOH . 
F 5 HOH A 210 510 148 HOH HOH . 
F 5 HOH A 211 511 268 HOH HOH . 
F 5 HOH A 212 512 319 HOH HOH . 
F 5 HOH A 213 513 20 HOH HOH . 
F 5 HOH A 214 514 180 HOH HOH . 
F 5 HOH A 215 515 115 HOH HOH . 
F 5 HOH A 216 516 36 HOH HOH . 
F 5 HOH A 217 517 133 HOH HOH . 
F 5 HOH A 218 518 117 HOH HOH . 
F 5 HOH A 219 519 143 HOH HOH . 
F 5 HOH A 220 520 302 HOH HOH . 
F 5 HOH A 221 521 289 HOH HOH . 
F 5 HOH A 222 522 150 HOH HOH . 
F 5 HOH A 223 523 63 HOH HOH . 
F 5 HOH A 224 524 308 HOH HOH . 
F 5 HOH A 225 525 149 HOH HOH . 
F 5 HOH A 226 526 147 HOH HOH . 
F 5 HOH A 227 527 128 HOH HOH . 
F 5 HOH A 228 528 74 HOH HOH . 
F 5 HOH A 229 529 191 HOH HOH . 
F 5 HOH A 230 530 142 HOH HOH . 
F 5 HOH A 231 531 105 HOH HOH . 
F 5 HOH A 232 532 145 HOH HOH . 
F 5 HOH A 233 533 137 HOH HOH . 
F 5 HOH A 234 534 161 HOH HOH . 
F 5 HOH A 235 535 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -4.654 2.854 5.041 1 11.7 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . B 2 -5.003 3.995 5.826 1 13.81 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . B 2 -4.627 1.595 5.918 1 11.75 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . B 2 -5.925 1.395 6.461 1 13.39 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . B 2 -4.142 0.384 5.11 1 11.61 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . B 2 -5.017 0.089 4.015 1 12.29 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           6 
#