data_5T85 # _model_server_result.job_id E7DQDnYi2uUK4LQFshA_9A _model_server_result.datetime_utc '2024-11-25 09:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5T85 # _exptl.entry_id 5T85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T85 _cell.length_a 55.006 _cell.length_b 67.287 _cell.length_c 194.678 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 158 H CYS 140 1_555 A SG CYS 214 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 137 L CYS 135 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C18 H35 O10 P' _chem_comp.formula_weight 442.438 _chem_comp.id 44G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(R)-{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 44G sing 1 n n C6 C5 44G sing 2 n n C1 C2 44G sing 3 n n C1 O3P 44G sing 4 n n C5 O5 44G sing 5 n n C5 C4 44G sing 6 n n C2 C10 44G sing 7 n n C2 O2 44G sing 8 n n O31 C31 44G doub 9 n n O1P P 44G doub 10 n n O4P C4 44G sing 11 n n O4P P 44G sing 12 n n C31 C32 44G sing 13 n n C31 O2 44G sing 14 n n C10 O1 44G sing 15 n n P O3P 44G sing 16 n n P O2P 44G sing 17 n n O3 C12 44G doub 18 n n O1 C12 44G sing 19 n n C12 C13 44G sing 20 n n C32 H1 44G sing 21 n n C32 H2 44G sing 22 n n C2 H4 44G sing 23 n n C1 H5 44G sing 24 n n C1 H6 44G sing 25 n n O2P H7 44G sing 26 n n C4 H8 44G sing 27 n n C4 H9 44G sing 28 n n C5 H10 44G sing 29 n n O5 H11 44G sing 30 n n C6 H12 44G sing 31 n n C6 H13 44G sing 32 n n O6 H14 44G sing 33 n n C10 H15 44G sing 34 n n C10 H16 44G sing 35 n n C13 H17 44G sing 36 n n C13 H18 44G sing 37 n n C32 C3 44G sing 38 n n C3 C7 44G sing 39 n n C7 C8 44G sing 40 n n C8 C9 44G sing 41 n n C13 C11 44G sing 42 n n C11 C14 44G sing 43 n n C14 C15 44G sing 44 n n C15 C16 44G sing 45 n n C3 H3 44G sing 46 n n C3 H19 44G sing 47 n n C7 H20 44G sing 48 n n C7 H21 44G sing 49 n n C8 H22 44G sing 50 n n C8 H23 44G sing 51 n n C9 H24 44G sing 52 n n C9 H25 44G sing 53 n n C9 H26 44G sing 54 n n C11 H27 44G sing 55 n n C11 H28 44G sing 56 n n C14 H29 44G sing 57 n n C14 H30 44G sing 58 n n C15 H31 44G sing 59 n n C15 H32 44G sing 60 n n C16 H33 44G sing 61 n n C16 H34 44G sing 62 n n C16 H35 44G sing 63 n n # _atom_sites.entry_id 5T85 _atom_sites.fract_transf_matrix[1][1] 0.01818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 44G L 1 301 1 44G 44G . E 5 PGE L 1 302 230 PGE 15P . F 5 PGE G 1 201 229 PGE 15P . G 6 HOH H 1 301 123 HOH HOH . G 6 HOH H 2 302 18 HOH HOH . G 6 HOH H 3 303 130 HOH HOH . G 6 HOH H 4 304 25 HOH HOH . G 6 HOH H 5 305 56 HOH HOH . G 6 HOH H 6 306 41 HOH HOH . G 6 HOH H 7 307 104 HOH HOH . G 6 HOH H 8 308 59 HOH HOH . G 6 HOH H 9 309 96 HOH HOH . G 6 HOH H 10 310 64 HOH HOH . G 6 HOH H 11 311 39 HOH HOH . G 6 HOH H 12 312 67 HOH HOH . G 6 HOH H 13 313 127 HOH HOH . G 6 HOH H 14 314 103 HOH HOH . G 6 HOH H 15 315 132 HOH HOH . G 6 HOH H 16 316 2 HOH HOH . G 6 HOH H 17 317 4 HOH HOH . G 6 HOH H 18 318 50 HOH HOH . G 6 HOH H 19 319 19 HOH HOH . G 6 HOH H 20 320 105 HOH HOH . G 6 HOH H 21 321 144 HOH HOH . G 6 HOH H 22 322 14 HOH HOH . G 6 HOH H 23 323 61 HOH HOH . G 6 HOH H 24 324 5 HOH HOH . G 6 HOH H 25 325 28 HOH HOH . G 6 HOH H 26 326 128 HOH HOH . G 6 HOH H 27 327 97 HOH HOH . G 6 HOH H 28 328 8 HOH HOH . G 6 HOH H 29 329 58 HOH HOH . G 6 HOH H 30 330 121 HOH HOH . G 6 HOH H 31 331 133 HOH HOH . G 6 HOH H 32 332 47 HOH HOH . G 6 HOH H 33 333 98 HOH HOH . G 6 HOH H 34 334 134 HOH HOH . G 6 HOH H 35 335 90 HOH HOH . G 6 HOH H 36 336 122 HOH HOH . G 6 HOH H 37 337 102 HOH HOH . G 6 HOH H 38 338 62 HOH HOH . G 6 HOH H 39 339 36 HOH HOH . G 6 HOH H 40 340 33 HOH HOH . G 6 HOH H 41 341 63 HOH HOH . G 6 HOH H 42 342 65 HOH HOH . G 6 HOH H 43 343 32 HOH HOH . G 6 HOH H 44 344 94 HOH HOH . G 6 HOH H 45 345 101 HOH HOH . G 6 HOH H 46 346 92 HOH HOH . G 6 HOH H 47 347 31 HOH HOH . G 6 HOH H 48 348 93 HOH HOH . G 6 HOH H 49 349 16 HOH HOH . G 6 HOH H 50 350 91 HOH HOH . G 6 HOH H 51 351 154 HOH HOH . H 6 HOH L 1 401 22 HOH HOH . H 6 HOH L 2 402 109 HOH HOH . H 6 HOH L 3 403 118 HOH HOH . H 6 HOH L 4 404 13 HOH HOH . H 6 HOH L 5 405 21 HOH HOH . H 6 HOH L 6 406 29 HOH HOH . H 6 HOH L 7 407 110 HOH HOH . H 6 HOH L 8 408 81 HOH HOH . H 6 HOH L 9 409 40 HOH HOH . H 6 HOH L 10 410 26 HOH HOH . H 6 HOH L 11 411 141 HOH HOH . H 6 HOH L 12 412 114 HOH HOH . H 6 HOH L 13 413 78 HOH HOH . H 6 HOH L 14 414 115 HOH HOH . H 6 HOH L 15 415 83 HOH HOH . H 6 HOH L 16 416 139 HOH HOH . H 6 HOH L 17 417 138 HOH HOH . H 6 HOH L 18 418 72 HOH HOH . H 6 HOH L 19 419 12 HOH HOH . H 6 HOH L 20 420 143 HOH HOH . H 6 HOH L 21 421 60 HOH HOH . H 6 HOH L 22 422 9 HOH HOH . H 6 HOH L 23 423 17 HOH HOH . H 6 HOH L 24 424 57 HOH HOH . H 6 HOH L 25 425 136 HOH HOH . H 6 HOH L 26 426 135 HOH HOH . H 6 HOH L 27 427 20 HOH HOH . H 6 HOH L 28 428 3 HOH HOH . H 6 HOH L 29 429 34 HOH HOH . H 6 HOH L 30 430 113 HOH HOH . H 6 HOH L 31 431 49 HOH HOH . H 6 HOH L 32 432 54 HOH HOH . H 6 HOH L 33 433 1 HOH HOH . H 6 HOH L 34 434 75 HOH HOH . H 6 HOH L 35 435 79 HOH HOH . H 6 HOH L 36 436 53 HOH HOH . H 6 HOH L 37 437 52 HOH HOH . H 6 HOH L 38 438 46 HOH HOH . H 6 HOH L 39 439 140 HOH HOH . H 6 HOH L 40 440 155 HOH HOH . H 6 HOH L 41 441 145 HOH HOH . H 6 HOH L 42 442 137 HOH HOH . H 6 HOH L 43 443 11 HOH HOH . H 6 HOH L 44 444 116 HOH HOH . H 6 HOH L 45 445 10 HOH HOH . H 6 HOH L 46 446 37 HOH HOH . H 6 HOH L 47 447 142 HOH HOH . H 6 HOH L 48 448 129 HOH HOH . H 6 HOH L 49 449 76 HOH HOH . H 6 HOH L 50 450 131 HOH HOH . H 6 HOH L 51 451 66 HOH HOH . H 6 HOH L 52 452 73 HOH HOH . H 6 HOH L 53 453 106 HOH HOH . H 6 HOH L 54 454 126 HOH HOH . H 6 HOH L 55 455 69 HOH HOH . H 6 HOH L 56 456 43 HOH HOH . H 6 HOH L 57 457 70 HOH HOH . H 6 HOH L 58 458 71 HOH HOH . H 6 HOH L 59 459 77 HOH HOH . H 6 HOH L 60 460 100 HOH HOH . H 6 HOH L 61 461 84 HOH HOH . H 6 HOH L 62 462 68 HOH HOH . I 6 HOH G 1 301 35 HOH HOH . I 6 HOH G 2 302 42 HOH HOH . I 6 HOH G 3 303 120 HOH HOH . I 6 HOH G 4 304 99 HOH HOH . I 6 HOH G 5 305 27 HOH HOH . I 6 HOH G 6 306 149 HOH HOH . I 6 HOH G 7 307 108 HOH HOH . I 6 HOH G 8 308 24 HOH HOH . I 6 HOH G 9 309 146 HOH HOH . I 6 HOH G 10 310 88 HOH HOH . I 6 HOH G 11 311 6 HOH HOH . I 6 HOH G 12 312 148 HOH HOH . I 6 HOH G 13 313 87 HOH HOH . I 6 HOH G 14 314 15 HOH HOH . I 6 HOH G 15 315 7 HOH HOH . I 6 HOH G 16 316 51 HOH HOH . I 6 HOH G 17 317 86 HOH HOH . I 6 HOH G 18 318 119 HOH HOH . I 6 HOH G 19 319 107 HOH HOH . I 6 HOH G 20 320 95 HOH HOH . I 6 HOH G 21 321 89 HOH HOH . I 6 HOH G 22 322 125 HOH HOH . I 6 HOH G 23 323 147 HOH HOH . I 6 HOH G 24 324 150 HOH HOH . I 6 HOH G 25 325 112 HOH HOH . I 6 HOH G 26 326 151 HOH HOH . I 6 HOH G 27 327 74 HOH HOH . I 6 HOH G 28 328 156 HOH HOH . I 6 HOH G 29 329 152 HOH HOH . I 6 HOH G 30 330 85 HOH HOH . I 6 HOH G 31 331 23 HOH HOH . I 6 HOH G 32 332 157 HOH HOH . I 6 HOH G 33 333 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 44G . . . D 4 -2.56 10.477 -0.758 1 111.29 ? C31 44G 301 L 1 HETATM 2 O O31 44G . . . D 4 -3.15 9.698 -1.486 1 111.53 ? O31 44G 301 L 1 HETATM 3 O O2 44G . . . D 4 -1.169 10.652 -0.88 1 110.97 ? O2 44G 301 L 1 HETATM 4 C C2 44G . . . D 4 -0.406 9.646 -0.255 1 110.77 ? C2 44G 301 L 1 HETATM 5 C C1 44G . . . D 4 -1.209 8.996 0.853 1 111.03 ? C1 44G 301 L 1 HETATM 6 O O3P 44G . . . D 4 -0.343 8.816 1.95 1 111.14 ? O3P 44G 301 L 1 HETATM 7 P P 44G . . . D 4 -0.944 8.782 3.407 1 129.22 ? P 44G 301 L 1 HETATM 8 O O1P 44G . . . D 4 -2.23 8.046 3.385 1 129.21 ? O1P 44G 301 L 1 HETATM 9 O O2P 44G . . . D 4 -0.13 7.932 4.299 1 129.11 ? O2P 44G 301 L 1 HETATM 10 O O4P 44G . . . D 4 -1.105 10.25 4.008 1 88.55 ? O4P 44G 301 L 1 HETATM 11 C C4 44G . . . D 4 -0.337 11.323 3.512 1 88.52 ? C4 44G 301 L 1 HETATM 12 C C5 44G . . . D 4 -1.194 12.251 2.664 1 88.71 ? C5 44G 301 L 1 HETATM 13 O O5 44G . . . D 4 -1.17 13.557 3.187 1 88.38 ? O5 44G 301 L 1 HETATM 14 C C6 44G . . . D 4 -2.637 11.785 2.578 1 89.17 ? C6 44G 301 L 1 HETATM 15 O O6 44G . . . D 4 -3.491 12.909 2.473 1 89.39 ? O6 44G 301 L 1 HETATM 16 C C10 44G . . . D 4 0.857 10.218 0.367 1 110.12 ? C10 44G 301 L 1 HETATM 17 O O1 44G . . . D 4 2.052 9.823 -0.277 1 109.44 ? O1 44G 301 L 1 HETATM 18 C C12 44G . . . D 4 2.151 10.141 -1.645 1 108.71 ? C12 44G 301 L 1 HETATM 19 O O3 44G . . . D 4 3.245 10.299 -2.156 1 108.16 ? O3 44G 301 L 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #