data_5T8E # _model_server_result.job_id IDiZ_EMftiUtfrvtUzozkg _model_server_result.datetime_utc '2024-12-23 08:08:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5T8E # _exptl.entry_id 5T8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T8E _cell.length_a 53.804 _cell.length_b 66.195 _cell.length_c 70.932 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 183 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 844 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 191 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 852 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 5T8E _atom_sites.fract_transf_matrix[1][1] 0.018586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1001 39 GOL GOL . C 2 GOL A 1 1002 40 GOL GOL . D 3 77U A 1 1003 1 77U LIG . E 4 HOH A 1 1101 9 HOH HOH . E 4 HOH A 2 1102 14 HOH HOH . E 4 HOH A 3 1103 4 HOH HOH . E 4 HOH A 4 1104 2 HOH HOH . E 4 HOH A 5 1105 6 HOH HOH . E 4 HOH A 6 1106 21 HOH HOH . E 4 HOH A 7 1107 26 HOH HOH . E 4 HOH A 8 1108 12 HOH HOH . E 4 HOH A 9 1109 1 HOH HOH . E 4 HOH A 10 1110 35 HOH HOH . E 4 HOH A 11 1111 8 HOH HOH . E 4 HOH A 12 1112 3 HOH HOH . E 4 HOH A 13 1113 5 HOH HOH . E 4 HOH A 14 1114 15 HOH HOH . E 4 HOH A 15 1115 29 HOH HOH . E 4 HOH A 16 1116 36 HOH HOH . E 4 HOH A 17 1117 27 HOH HOH . E 4 HOH A 18 1118 13 HOH HOH . E 4 HOH A 19 1119 7 HOH HOH . E 4 HOH A 20 1120 34 HOH HOH . E 4 HOH A 21 1121 18 HOH HOH . E 4 HOH A 22 1122 28 HOH HOH . E 4 HOH A 23 1123 19 HOH HOH . E 4 HOH A 24 1124 38 HOH HOH . E 4 HOH A 25 1125 10 HOH HOH . E 4 HOH A 26 1126 31 HOH HOH . E 4 HOH A 27 1127 33 HOH HOH . E 4 HOH A 28 1128 17 HOH HOH . E 4 HOH A 29 1129 11 HOH HOH . E 4 HOH A 30 1130 25 HOH HOH . E 4 HOH A 31 1131 30 HOH HOH . E 4 HOH A 32 1132 22 HOH HOH . E 4 HOH A 33 1133 24 HOH HOH . E 4 HOH A 34 1134 16 HOH HOH . E 4 HOH A 35 1135 20 HOH HOH . E 4 HOH A 36 1136 37 HOH HOH . E 4 HOH A 37 1137 23 HOH HOH . E 4 HOH A 38 1138 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 32.128 -6.803 -10.951 1 75.73 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . B 2 33.072 -5.798 -10.538 1 69.52 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . B 2 30.95 -6.808 -9.978 1 74.16 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . B 2 30.198 -5.606 -10.116 1 81.09 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . B 2 29.96 -7.931 -10.209 1 72.89 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . B 2 28.956 -7.8 -9.194 1 72.54 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 736 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #