data_5T8E # _model_server_result.job_id YEa1l7-eKk2x55lOxU17VQ _model_server_result.datetime_utc '2024-12-23 07:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5T8E # _exptl.entry_id 5T8E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.724 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-4-[(2S,3S)-3-hydroxy-2-methylpyrrolidin-1-yl]-3-methylbenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T8E _cell.length_a 53.804 _cell.length_b 66.195 _cell.length_c 70.932 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 183 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 844 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 191 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 852 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H15 Cl N2 O' _chem_comp.formula_weight 250.724 _chem_comp.id 77U _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-4-[(2S,3S)-3-hydroxy-2-methylpyrrolidin-1-yl]-3-methylbenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 77U sing 1 n n C8 N9 77U sing 2 n n C7 C4 77U sing 3 n n C4 O6 77U sing 4 n n C4 C2 77U sing 5 n n C12 C11 77U doub 6 n y C12 C13 77U sing 7 n y N15 C14 77U trip 8 n n C11 C10 77U sing 9 n y C14 C13 77U sing 10 n n C13 C16 77U doub 11 n y C10 N9 77U sing 12 n n C10 C18 77U doub 13 n y N9 C2 77U sing 14 n n C2 C1 77U sing 15 n n C16 C18 77U sing 16 n y C16 CL1 77U sing 17 n n C18 C19 77U sing 18 n n C4 H1 77U sing 19 n n C7 H2 77U sing 20 n n C7 H3 77U sing 21 n n C8 H4 77U sing 22 n n C8 H5 77U sing 23 n n C1 H6 77U sing 24 n n C1 H7 77U sing 25 n n C1 H8 77U sing 26 n n C2 H9 77U sing 27 n n O6 H10 77U sing 28 n n C11 H11 77U sing 29 n n C12 H12 77U sing 30 n n C19 H13 77U sing 31 n n C19 H14 77U sing 32 n n C19 H15 77U sing 33 n n # _atom_sites.entry_id 5T8E _atom_sites.fract_transf_matrix[1][1] 0.018586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1001 39 GOL GOL . C 2 GOL A 1 1002 40 GOL GOL . D 3 77U A 1 1003 1 77U LIG . E 4 HOH A 1 1101 9 HOH HOH . E 4 HOH A 2 1102 14 HOH HOH . E 4 HOH A 3 1103 4 HOH HOH . E 4 HOH A 4 1104 2 HOH HOH . E 4 HOH A 5 1105 6 HOH HOH . E 4 HOH A 6 1106 21 HOH HOH . E 4 HOH A 7 1107 26 HOH HOH . E 4 HOH A 8 1108 12 HOH HOH . E 4 HOH A 9 1109 1 HOH HOH . E 4 HOH A 10 1110 35 HOH HOH . E 4 HOH A 11 1111 8 HOH HOH . E 4 HOH A 12 1112 3 HOH HOH . E 4 HOH A 13 1113 5 HOH HOH . E 4 HOH A 14 1114 15 HOH HOH . E 4 HOH A 15 1115 29 HOH HOH . E 4 HOH A 16 1116 36 HOH HOH . E 4 HOH A 17 1117 27 HOH HOH . E 4 HOH A 18 1118 13 HOH HOH . E 4 HOH A 19 1119 7 HOH HOH . E 4 HOH A 20 1120 34 HOH HOH . E 4 HOH A 21 1121 18 HOH HOH . E 4 HOH A 22 1122 28 HOH HOH . E 4 HOH A 23 1123 19 HOH HOH . E 4 HOH A 24 1124 38 HOH HOH . E 4 HOH A 25 1125 10 HOH HOH . E 4 HOH A 26 1126 31 HOH HOH . E 4 HOH A 27 1127 33 HOH HOH . E 4 HOH A 28 1128 17 HOH HOH . E 4 HOH A 29 1129 11 HOH HOH . E 4 HOH A 30 1130 25 HOH HOH . E 4 HOH A 31 1131 30 HOH HOH . E 4 HOH A 32 1132 22 HOH HOH . E 4 HOH A 33 1133 24 HOH HOH . E 4 HOH A 34 1134 16 HOH HOH . E 4 HOH A 35 1135 20 HOH HOH . E 4 HOH A 36 1136 37 HOH HOH . E 4 HOH A 37 1137 23 HOH HOH . E 4 HOH A 38 1138 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 77U . . . D 3 28.894 -0.317 3.555 1 67.69 ? C4 77U 1003 A 1 HETATM 2 C C7 77U . . . D 3 27.509 -0.934 3.274 1 65.23 ? C7 77U 1003 A 1 HETATM 3 C C8 77U . . . D 3 26.614 0.312 3.209 1 63.08 ? C8 77U 1003 A 1 HETATM 4 C C10 77U . . . D 3 26.652 2.486 4.241 1 62.66 ? C10 77U 1003 A 1 HETATM 5 C C13 77U . . . D 3 25.756 5.126 4.125 1 64.11 ? C13 77U 1003 A 1 HETATM 6 C C1 77U . . . D 3 29.125 0.999 5.762 1 62.85 ? C1 77U 1003 A 1 HETATM 7 C C2 77U . . . D 3 28.611 1.01 4.319 1 64.97 ? C2 77U 1003 A 1 HETATM 8 O O6 77U . . . D 3 29.69 -1.243 4.301 1 71.13 ? O6 77U 1003 A 1 HETATM 9 N N9 77U . . . D 3 27.122 1.167 4.317 1 63.53 ? N9 77U 1003 A 1 HETATM 10 C C11 77U . . . D 3 27.553 3.541 4.031 1 62.14 ? C11 77U 1003 A 1 HETATM 11 C C12 77U . . . D 3 27.122 4.847 3.97 1 62.51 ? C12 77U 1003 A 1 HETATM 12 C C14 77U . . . D 3 25.303 6.484 4.052 1 61.63 ? C14 77U 1003 A 1 HETATM 13 N N15 77U . . . D 3 25.036 7.59 3.982 1 61.98 ? N15 77U 1003 A 1 HETATM 14 C C16 77U . . . D 3 24.839 4.075 4.334 1 65.09 ? C16 77U 1003 A 1 HETATM 15 CL CL1 77U . . . D 3 23.14 4.397 4.522 1 73.21 ? CL1 77U 1003 A 1 HETATM 16 C C18 77U . . . D 3 25.282 2.769 4.396 1 63.06 ? C18 77U 1003 A 1 HETATM 17 C C19 77U . . . D 3 24.258 1.686 4.637 1 64.62 ? C19 77U 1003 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #