data_5T8J
#
_model_server_result.job_id            D9rbx4x2ePxUE7TL4RDexg 
_model_server_result.datetime_utc      '2025-01-10 13:10:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t8j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5T8J 
#
_exptl.entry_id    5T8J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              248.296 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-fluoro-4-[(2S,3S)-3-hydroxy-2,3-dimethylpyrrolidin-1-yl]-3-methylbenzonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T8J 
_cell.length_a            52.449 
_cell.length_b            65.675 
_cell.length_c            70.713 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T8J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             183 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              844 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             191 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              852 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.039 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C14 H17 F N2 O' 
_chem_comp.formula_weight    248.296 
_chem_comp.id                77T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-fluoro-4-[(2S,3S)-3-hydroxy-2,3-dimethylpyrrolidin-1-yl]-3-methylbenzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 77T sing 1 n n 
O9 C7 77T sing 2 n n 
C12 C11 77T doub 3 n y 
C12 C13 77T sing 4 n y 
C11 C10 77T sing 5 n y 
N15 C14 77T trip 6 n n 
C14 C13 77T sing 7 n n 
C13 C16 77T doub 8 n y 
C10 N4 77T sing 9 n n 
C10 C18 77T doub 10 n y 
N4 C2 77T sing 11 n n 
N4 C5 77T sing 12 n n 
C16 C18 77T sing 13 n y 
C16 F17 77T sing 14 n n 
C2 C7 77T sing 15 n n 
C18 C19 77T sing 16 n n 
C7 C8 77T sing 17 n n 
C7 C6 77T sing 18 n n 
C5 C6 77T sing 19 n n 
C5 H1 77T sing 20 n n 
C5 H2 77T sing 21 n n 
C6 H3 77T sing 22 n n 
C6 H4 77T sing 23 n n 
C8 H5 77T sing 24 n n 
C8 H6 77T sing 25 n n 
C8 H7 77T sing 26 n n 
C1 H8 77T sing 27 n n 
C1 H9 77T sing 28 n n 
C1 H10 77T sing 29 n n 
C2 H11 77T sing 30 n n 
O9 H12 77T sing 31 n n 
C11 H13 77T sing 32 n n 
C12 H14 77T sing 33 n n 
C19 H15 77T sing 34 n n 
C19 H16 77T sing 35 n n 
C19 H17 77T sing 36 n n 
#
_atom_sites.entry_id                     5T8J 
_atom_sites.fract_transf_matrix[1][1]    0.019066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015226 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1001 52 GOL GOL . 
C 3 77T A 1 1002 1 77T LIG . 
D 4 HOH A 1 1101 7 HOH HOH . 
D 4 HOH A 2 1102 43 HOH HOH . 
D 4 HOH A 3 1103 23 HOH HOH . 
D 4 HOH A 4 1104 19 HOH HOH . 
D 4 HOH A 5 1105 48 HOH HOH . 
D 4 HOH A 6 1106 29 HOH HOH . 
D 4 HOH A 7 1107 1 HOH HOH . 
D 4 HOH A 8 1108 30 HOH HOH . 
D 4 HOH A 9 1109 2 HOH HOH . 
D 4 HOH A 10 1110 27 HOH HOH . 
D 4 HOH A 11 1111 14 HOH HOH . 
D 4 HOH A 12 1112 33 HOH HOH . 
D 4 HOH A 13 1113 5 HOH HOH . 
D 4 HOH A 14 1114 12 HOH HOH . 
D 4 HOH A 15 1115 3 HOH HOH . 
D 4 HOH A 16 1116 25 HOH HOH . 
D 4 HOH A 17 1117 32 HOH HOH . 
D 4 HOH A 18 1118 50 HOH HOH . 
D 4 HOH A 19 1119 16 HOH HOH . 
D 4 HOH A 20 1120 8 HOH HOH . 
D 4 HOH A 21 1121 17 HOH HOH . 
D 4 HOH A 22 1122 4 HOH HOH . 
D 4 HOH A 23 1123 42 HOH HOH . 
D 4 HOH A 24 1124 46 HOH HOH . 
D 4 HOH A 25 1125 45 HOH HOH . 
D 4 HOH A 26 1126 9 HOH HOH . 
D 4 HOH A 27 1127 49 HOH HOH . 
D 4 HOH A 28 1128 39 HOH HOH . 
D 4 HOH A 29 1129 51 HOH HOH . 
D 4 HOH A 30 1130 37 HOH HOH . 
D 4 HOH A 31 1131 20 HOH HOH . 
D 4 HOH A 32 1132 10 HOH HOH . 
D 4 HOH A 33 1133 11 HOH HOH . 
D 4 HOH A 34 1134 13 HOH HOH . 
D 4 HOH A 35 1135 26 HOH HOH . 
D 4 HOH A 36 1136 21 HOH HOH . 
D 4 HOH A 37 1137 22 HOH HOH . 
D 4 HOH A 38 1138 38 HOH HOH . 
D 4 HOH A 39 1139 15 HOH HOH . 
D 4 HOH A 40 1140 44 HOH HOH . 
D 4 HOH A 41 1141 31 HOH HOH . 
D 4 HOH A 42 1142 18 HOH HOH . 
D 4 HOH A 43 1143 47 HOH HOH . 
D 4 HOH A 44 1144 36 HOH HOH . 
D 4 HOH A 45 1145 6 HOH HOH . 
D 4 HOH A 46 1146 24 HOH HOH . 
D 4 HOH A 47 1147 40 HOH HOH . 
D 4 HOH A 48 1148 34 HOH HOH . 
D 4 HOH A 49 1149 35 HOH HOH . 
D 4 HOH A 50 1150 41 HOH HOH . 
D 4 HOH A 51 1151 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 77T . . . C 3 28.318 1.912 5.152 1 64.74 ? C5 77T 1002 A 1 
HETATM 2 C C6 77T . . . C 3 28.487 0.457 5.671 1 69.25 ? C6 77T 1002 A 1 
HETATM 3 C C7 77T . . . C 3 27.573 -0.373 4.738 1 68.52 ? C7 77T 1002 A 1 
HETATM 4 C C8 77T . . . C 3 27.042 -1.661 5.374 1 70.38 ? C8 77T 1002 A 1 
HETATM 5 C C10 77T . . . C 3 26.333 3.114 4.328 1 68.21 ? C10 77T 1002 A 1 
HETATM 6 C C13 77T . . . C 3 25.302 5.725 4.217 1 69.99 ? C13 77T 1002 A 1 
HETATM 7 C C1 77T . . . C 3 25.636 0.151 3.271 1 67.66 ? C1 77T 1002 A 1 
HETATM 8 C C2 77T . . . C 3 26.407 0.591 4.512 1 66.5 ? C2 77T 1002 A 1 
HETATM 9 N N4 77T . . . C 3 27.064 1.897 4.33 1 66.28 ? N4 77T 1002 A 1 
HETATM 10 O O9 77T . . . C 3 28.273 -0.671 3.53 1 69.83 ? O9 77T 1002 A 1 
HETATM 11 C C11 77T . . . C 3 27.155 4.218 4.061 1 66.15 ? C11 77T 1002 A 1 
HETATM 12 C C12 77T . . . C 3 26.664 5.492 4.012 1 66.93 ? C12 77T 1002 A 1 
HETATM 13 C C14 77T . . . C 3 24.891 7.09 4.131 1 67.91 ? C14 77T 1002 A 1 
HETATM 14 N N15 77T . . . C 3 24.545 8.167 4.072 1 71.58 ? N15 77T 1002 A 1 
HETATM 15 C C16 77T . . . C 3 24.419 4.647 4.486 1 72.16 ? C16 77T 1002 A 1 
HETATM 16 F F17 77T . . . C 3 23.084 4.875 4.684 1 69.72 ? F17 77T 1002 A 1 
HETATM 17 C C18 77T . . . C 3 24.932 3.341 4.54 1 67.72 ? C18 77T 1002 A 1 
HETATM 18 C C19 77T . . . C 3 23.911 2.268 4.835 1 64.53 ? C19 77T 1002 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#