data_5T8U # _model_server_result.job_id yN4rp2EUBrm8Vt_psH-Hbg _model_server_result.datetime_utc '2024-11-17 08:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5T8U # _exptl.entry_id 5T8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LIPOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T8U _cell.length_a 120.24 _cell.length_b 120.24 _cell.length_c 134.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H14 O2 S2' _chem_comp.formula_weight 206.326 _chem_comp.id LPA _chem_comp.mon_nstd_flag . _chem_comp.name 'LIPOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LPA sing 194 n n C1 O2 LPA doub 195 n n C1 O1 LPA sing 196 n n O1 HO1 LPA sing 197 n n C3 C2 LPA sing 198 n n C2 H2 LPA sing 199 n n C2 H2A LPA sing 200 n n C4 C3 LPA sing 201 n n C3 H3 LPA sing 202 n n C3 H3A LPA sing 203 n n C5 C4 LPA sing 204 n n C4 H4 LPA sing 205 n n C4 H4A LPA sing 206 n n C6 C5 LPA sing 207 n n C5 H5 LPA sing 208 n n C5 H5A LPA sing 209 n n C7 C6 LPA sing 210 n n C6 S6 LPA sing 211 n n C6 H6 LPA sing 212 n n S8 S6 LPA sing 213 n n C8 C7 LPA sing 214 n n C7 H7 LPA sing 215 n n C7 H7A LPA sing 216 n n C8 S8 LPA sing 217 n n C8 H8 LPA sing 218 n n C8 H8A LPA sing 219 n n # _atom_sites.entry_id 5T8U _atom_sites.fract_transf_matrix[1][1] 0.008317 _atom_sites.fract_transf_matrix[1][2] 0.004802 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LPA A 1 401 380 LPA LPA . D 2 LPA B 1 401 380 LPA LPA . E 3 HOH A 1 501 2 HOH HOH . E 3 HOH A 2 502 11 HOH HOH . E 3 HOH A 3 503 28 HOH HOH . E 3 HOH A 4 504 22 HOH HOH . E 3 HOH A 5 505 37 HOH HOH . E 3 HOH A 6 506 63 HOH HOH . E 3 HOH A 7 507 7 HOH HOH . E 3 HOH A 8 508 82 HOH HOH . E 3 HOH A 9 509 69 HOH HOH . E 3 HOH A 10 510 4 HOH HOH . E 3 HOH A 11 511 38 HOH HOH . E 3 HOH A 12 512 57 HOH HOH . E 3 HOH A 13 513 70 HOH HOH . E 3 HOH A 14 514 50 HOH HOH . E 3 HOH A 15 515 19 HOH HOH . E 3 HOH A 16 516 29 HOH HOH . E 3 HOH A 17 517 46 HOH HOH . E 3 HOH A 18 518 18 HOH HOH . E 3 HOH A 19 519 49 HOH HOH . E 3 HOH A 20 520 83 HOH HOH . E 3 HOH A 21 521 26 HOH HOH . E 3 HOH A 22 522 78 HOH HOH . E 3 HOH A 23 523 68 HOH HOH . E 3 HOH A 24 524 71 HOH HOH . E 3 HOH A 25 525 84 HOH HOH . E 3 HOH A 26 526 79 HOH HOH . E 3 HOH A 27 527 10 HOH HOH . E 3 HOH A 28 528 14 HOH HOH . E 3 HOH A 29 529 40 HOH HOH . E 3 HOH A 30 530 72 HOH HOH . E 3 HOH A 31 531 25 HOH HOH . E 3 HOH A 32 532 74 HOH HOH . E 3 HOH A 33 533 80 HOH HOH . E 3 HOH A 34 534 81 HOH HOH . E 3 HOH A 35 535 75 HOH HOH . E 3 HOH A 36 536 33 HOH HOH . E 3 HOH A 37 537 52 HOH HOH . E 3 HOH A 38 538 64 HOH HOH . E 3 HOH A 39 539 58 HOH HOH . E 3 HOH A 40 540 60 HOH HOH . F 3 HOH B 1 501 17 HOH HOH . F 3 HOH B 2 502 56 HOH HOH . F 3 HOH B 3 503 15 HOH HOH . F 3 HOH B 4 504 16 HOH HOH . F 3 HOH B 5 505 8 HOH HOH . F 3 HOH B 6 506 30 HOH HOH . F 3 HOH B 7 507 27 HOH HOH . F 3 HOH B 8 508 39 HOH HOH . F 3 HOH B 9 509 41 HOH HOH . F 3 HOH B 10 510 42 HOH HOH . F 3 HOH B 11 511 36 HOH HOH . F 3 HOH B 12 512 21 HOH HOH . F 3 HOH B 13 513 20 HOH HOH . F 3 HOH B 14 514 32 HOH HOH . F 3 HOH B 15 515 1 HOH HOH . F 3 HOH B 16 516 53 HOH HOH . F 3 HOH B 17 517 66 HOH HOH . F 3 HOH B 18 518 3 HOH HOH . F 3 HOH B 19 519 5 HOH HOH . F 3 HOH B 20 520 59 HOH HOH . F 3 HOH B 21 521 67 HOH HOH . F 3 HOH B 22 522 51 HOH HOH . F 3 HOH B 23 523 12 HOH HOH . F 3 HOH B 24 524 43 HOH HOH . F 3 HOH B 25 525 24 HOH HOH . F 3 HOH B 26 526 35 HOH HOH . F 3 HOH B 27 527 73 HOH HOH . F 3 HOH B 28 528 44 HOH HOH . F 3 HOH B 29 529 34 HOH HOH . F 3 HOH B 30 530 45 HOH HOH . F 3 HOH B 31 531 47 HOH HOH . F 3 HOH B 32 532 6 HOH HOH . F 3 HOH B 33 533 9 HOH HOH . F 3 HOH B 34 534 23 HOH HOH . F 3 HOH B 35 535 31 HOH HOH . F 3 HOH B 36 536 65 HOH HOH . F 3 HOH B 37 537 48 HOH HOH . F 3 HOH B 38 538 13 HOH HOH . F 3 HOH B 39 539 61 HOH HOH . F 3 HOH B 40 540 77 HOH HOH . F 3 HOH B 41 541 55 HOH HOH . F 3 HOH B 42 542 62 HOH HOH . F 3 HOH B 43 543 76 HOH HOH . F 3 HOH B 44 544 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPA . . . D 2 105.673 689.34 279.74 1 94.58 ? C1 LPA 401 B 1 HETATM 2 O O1 LPA . . . D 2 106.144 688.315 280.299 1 94.74 ? O1 LPA 401 B 1 HETATM 3 C C2 LPA . . . D 2 106.539 690.148 278.778 1 95.11 ? C2 LPA 401 B 1 HETATM 4 O O2 LPA . . . D 2 104.49 689.702 279.977 1 94.66 ? O2 LPA 401 B 1 HETATM 5 C C3 LPA . . . D 2 107.005 689.241 277.643 1 96.03 ? C3 LPA 401 B 1 HETATM 6 C C4 LPA . . . D 2 107.721 690.08 276.59 1 97.28 ? C4 LPA 401 B 1 HETATM 7 C C5 LPA . . . D 2 108.557 689.17 275.689 1 98.98 ? C5 LPA 401 B 1 HETATM 8 C C6 LPA . . . D 2 108.804 689.82 274.47 1 100.66 ? C6 LPA 401 B 1 HETATM 9 S S6 LPA . . . D 2 109.753 691.017 274.672 1 102.24 ? S6 LPA 401 B 1 HETATM 10 C C7 LPA . . . D 2 109.737 688.618 273.21 1 101.15 ? C7 LPA 401 B 1 HETATM 11 C C8 LPA . . . D 2 110.512 689.552 272.177 1 101.23 ? C8 LPA 401 B 1 HETATM 12 S S8 LPA . . . D 2 110.705 691.176 273.004 1 101.58 ? S8 LPA 401 B 1 HETATM 13 H H2 LPA . . . D 2 106.021 690.883 278.414 1 114.13 ? H2 LPA 401 B 1 HETATM 14 H H2A LPA . . . D 2 107.31 690.497 279.252 1 114.13 ? H2A LPA 401 B 1 HETATM 15 H H3 LPA . . . D 2 107.614 688.571 277.992 1 115.24 ? H3 LPA 401 B 1 HETATM 16 H H3A LPA . . . D 2 106.238 688.803 277.242 1 115.24 ? H3A LPA 401 B 1 HETATM 17 H H4 LPA . . . D 2 107.066 690.552 276.053 1 116.74 ? H4 LPA 401 B 1 HETATM 18 H H4A LPA . . . D 2 108.302 690.722 277.028 1 116.74 ? H4A LPA 401 B 1 HETATM 19 H H5 LPA . . . D 2 108.073 688.346 275.524 1 118.78 ? H5 LPA 401 B 1 HETATM 20 H H5A LPA . . . D 2 109.399 688.969 276.125 1 118.78 ? H5A LPA 401 B 1 HETATM 21 H H6 LPA . . . D 2 107.971 690.124 274.077 1 120.79 ? H6 LPA 401 B 1 HETATM 22 H H7 LPA . . . D 2 109.092 688.067 272.739 1 121.38 ? H7 LPA 401 B 1 HETATM 23 H H7A LPA . . . D 2 110.369 688.06 273.691 1 121.38 ? H7A LPA 401 B 1 HETATM 24 H H8 LPA . . . D 2 111.384 689.175 271.977 1 121.47 ? H8 LPA 401 B 1 HETATM 25 H H8A LPA . . . D 2 109.992 689.652 271.364 1 121.47 ? H8A LPA 401 B 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 25 #