data_5T8Y # _model_server_result.job_id PqsxUotr_g9A-NWPTqYdow _model_server_result.datetime_utc '2024-11-15 06:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 5T8Y # _exptl.entry_id 5T8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.13 _cell.angle_gamma 90 _cell.entry_id 5T8Y _cell.length_a 44.763 _cell.length_b 111.03 _cell.length_c 95.971 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,Q 1 1 B,C,I,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 216 A CYS 188 1_555 D FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A SG CYS 219 A CYS 191 1_555 D FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A SG CYS 222 A CYS 194 1_555 D FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 A SG CYS 226 A CYS 198 1_555 E FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 A SG CYS 242 A CYS 214 1_555 E FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 A SG CYS 268 A CYS 240 1_555 E FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc7 A SG CYS 271 A CYS 243 1_555 E FE2 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 A SG CYS 275 A CYS 247 1_555 D FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 B SG CYS 216 B CYS 188 1_555 I FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc10 B SG CYS 219 B CYS 191 1_555 I FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc11 B SG CYS 222 B CYS 194 1_555 I FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc12 B SG CYS 226 B CYS 198 1_555 J FE1 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc13 B SG CYS 242 B CYS 214 1_555 J FE4 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc14 B SG CYS 268 B CYS 240 1_555 J FE3 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc15 B SG CYS 271 B CYS 243 1_555 J FE2 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc16 B SG CYS 275 B CYS 247 1_555 I FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 599 n n FE1 S3 SF4 sing 600 n n FE1 S4 SF4 sing 601 n n FE2 S1 SF4 sing 602 n n FE2 S3 SF4 sing 603 n n FE2 S4 SF4 sing 604 n n FE3 S1 SF4 sing 605 n n FE3 S2 SF4 sing 606 n n FE3 S4 SF4 sing 607 n n FE4 S1 SF4 sing 608 n n FE4 S2 SF4 sing 609 n n FE4 S3 SF4 sing 610 n n # _atom_sites.entry_id 5T8Y _atom_sites.fract_transf_matrix[1][1] 0.02234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SF4 A 1 501 500 SF4 FS4 . E 3 SF4 A 1 502 501 SF4 FS4 . F 4 B12 A 1 503 600 B12 B12 . G 5 PO4 A 1 504 1 PO4 PO4 . H 5 PO4 A 1 505 3 PO4 PO4 . I 3 SF4 B 1 501 500 SF4 FS4 . J 3 SF4 B 1 502 501 SF4 FS4 . K 4 B12 B 1 503 600 B12 B12 . L 5 PO4 B 1 504 2 PO4 PO4 . M 5 PO4 B 1 505 4 PO4 PO4 . N 5 PO4 B 1 506 5 PO4 PO4 . O 5 PO4 B 1 507 6 PO4 PO4 . P 5 PO4 B 1 508 7 PO4 PO4 . Q 6 HOH A 1 601 7 HOH HOH . Q 6 HOH A 2 602 9 HOH HOH . Q 6 HOH A 3 603 2 HOH HOH . Q 6 HOH A 4 604 10 HOH HOH . Q 6 HOH A 5 605 1 HOH HOH . Q 6 HOH A 6 606 6 HOH HOH . Q 6 HOH A 7 607 13 HOH HOH . Q 6 HOH A 8 608 12 HOH HOH . Q 6 HOH A 9 609 11 HOH HOH . R 6 HOH B 1 601 3 HOH HOH . R 6 HOH B 2 602 4 HOH HOH . R 6 HOH B 3 603 5 HOH HOH . R 6 HOH B 4 604 14 HOH HOH . R 6 HOH B 5 605 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . I 3 21.255 14.731 -20.423 0.8 84.56 ? FE1 SF4 501 B 1 HETATM 2 FE FE2 SF4 . . . I 3 23.8 15.728 -20.384 0.8 91.91 ? FE2 SF4 501 B 1 HETATM 3 FE FE3 SF4 . . . I 3 21.911 16.733 -18.678 0.8 86.46 ? FE3 SF4 501 B 1 HETATM 4 FE FE4 SF4 . . . I 3 21.746 17.256 -21.359 0.8 85.29 ? FE4 SF4 501 B 1 HETATM 5 S S1 SF4 . . . I 3 23.395 17.926 -19.932 0.8 85.15 ? S1 SF4 501 B 1 HETATM 6 S S2 SF4 . . . I 3 20.046 16.612 -19.981 0.8 83.13 ? S2 SF4 501 B 1 HETATM 7 S S3 SF4 . . . I 3 22.527 15.297 -22.226 0.8 86.29 ? S3 SF4 501 B 1 HETATM 8 S S4 SF4 . . . I 3 22.744 14.611 -18.702 0.8 84.52 ? S4 SF4 501 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #