data_5T8Y
#
_model_server_result.job_id            RjSWQ5ewnMaFiEWytGXPwQ 
_model_server_result.datetime_utc      '2024-11-15 05:42:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    5T8Y 
#
_exptl.entry_id    5T8Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.13 
_cell.angle_gamma         90 
_cell.entry_id            5T8Y 
_cell.length_a            44.763 
_cell.length_b            111.03 
_cell.length_c            95.971 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,Q 1 1 
B,C,I,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 216 A CYS 188 1_555 D FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A SG CYS 219 A CYS 191 1_555 D FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc3 A SG CYS 222 A CYS 194 1_555 D FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc4 A SG CYS 226 A CYS 198 1_555 E FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 A SG CYS 242 A CYS 214 1_555 E FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 A SG CYS 268 A CYS 240 1_555 E FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc7 A SG CYS 271 A CYS 243 1_555 E FE2 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc8 A SG CYS 275 A CYS 247 1_555 D FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc9 B SG CYS 216 B CYS 188 1_555 I FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc10 B SG CYS 219 B CYS 191 1_555 I FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc11 B SG CYS 222 B CYS 194 1_555 I FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc12 B SG CYS 226 B CYS 198 1_555 J FE1 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc13 B SG CYS 242 B CYS 214 1_555 J FE4 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc14 B SG CYS 268 B CYS 240 1_555 J FE3 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc15 B SG CYS 271 B CYS 243 1_555 J FE2 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc16 B SG CYS 275 B CYS 247 1_555 I FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 599 n n 
FE1 S3 SF4 sing 600 n n 
FE1 S4 SF4 sing 601 n n 
FE2 S1 SF4 sing 602 n n 
FE2 S3 SF4 sing 603 n n 
FE2 S4 SF4 sing 604 n n 
FE3 S1 SF4 sing 605 n n 
FE3 S2 SF4 sing 606 n n 
FE3 S4 SF4 sing 607 n n 
FE4 S1 SF4 sing 608 n n 
FE4 S2 SF4 sing 609 n n 
FE4 S3 SF4 sing 610 n n 
#
_atom_sites.entry_id                     5T8Y 
_atom_sites.fract_transf_matrix[1][1]    0.02234 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00359 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009007 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SF4 A 1 501 500 SF4 FS4 . 
E 3 SF4 A 1 502 501 SF4 FS4 . 
F 4 B12 A 1 503 600 B12 B12 . 
G 5 PO4 A 1 504 1 PO4 PO4 . 
H 5 PO4 A 1 505 3 PO4 PO4 . 
I 3 SF4 B 1 501 500 SF4 FS4 . 
J 3 SF4 B 1 502 501 SF4 FS4 . 
K 4 B12 B 1 503 600 B12 B12 . 
L 5 PO4 B 1 504 2 PO4 PO4 . 
M 5 PO4 B 1 505 4 PO4 PO4 . 
N 5 PO4 B 1 506 5 PO4 PO4 . 
O 5 PO4 B 1 507 6 PO4 PO4 . 
P 5 PO4 B 1 508 7 PO4 PO4 . 
Q 6 HOH A 1 601 7 HOH HOH . 
Q 6 HOH A 2 602 9 HOH HOH . 
Q 6 HOH A 3 603 2 HOH HOH . 
Q 6 HOH A 4 604 10 HOH HOH . 
Q 6 HOH A 5 605 1 HOH HOH . 
Q 6 HOH A 6 606 6 HOH HOH . 
Q 6 HOH A 7 607 13 HOH HOH . 
Q 6 HOH A 8 608 12 HOH HOH . 
Q 6 HOH A 9 609 11 HOH HOH . 
R 6 HOH B 1 601 3 HOH HOH . 
R 6 HOH B 2 602 4 HOH HOH . 
R 6 HOH B 3 603 5 HOH HOH . 
R 6 HOH B 4 604 14 HOH HOH . 
R 6 HOH B 5 605 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . J 3 14.59 6.834 -17.933 1 70.96 ? FE1 SF4 502 B 1 
HETATM 2 FE FE2 SF4 . . . J 3 14.221 9.392 -17.04 1 72.36 ? FE2 SF4 502 B 1 
HETATM 3 FE FE3 SF4 . . . J 3 13.711 7.284 -15.379 1 70.95 ? FE3 SF4 502 B 1 
HETATM 4 FE FE4 SF4 . . . J 3 12.058 7.778 -17.502 1 68.88 ? FE4 SF4 502 B 1 
HETATM 5 S S1 SF4 . . . J 3 12.404 9.122 -15.694 1 70.18 ? S1 SF4 502 B 1 
HETATM 6 S S2 SF4 . . . J 3 12.891 5.756 -16.859 1 70.36 ? S2 SF4 502 B 1 
HETATM 7 S S3 SF4 . . . J 3 13.558 8.536 -19.046 1 72.41 ? S3 SF4 502 B 1 
HETATM 8 S S4 SF4 . . . J 3 15.73 7.875 -16.258 1 75.74 ? S4 SF4 502 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#