data_5T9C
#
_model_server_result.job_id            braNQicHu4trf1c_1wDT0A 
_model_server_result.datetime_utc      '2024-11-01 03:34:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5T9C 
#
_exptl.entry_id    5T9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.074 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SN-GLYCEROL-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T9C 
_cell.length_a            47.101 
_cell.length_b            58.24 
_cell.length_c            87.565 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 45 E GLU 70 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 A OD1 ASP 47 E ASP 72 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc3 A O ASP 65 E ASP 90 1_555 E NA NA . E NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 A O THR 68 E THR 93 1_555 E NA NA . E NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc5 A OE1 GLU 127 E GLU 152 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc6 B CA CA . E CA 301 1_555 C O1 G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc7 B CA CA . E CA 301 1_555 C O2 G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc8 B CA CA . E CA 301 1_555 C O3P G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc9 B CA CA . E CA 301 1_555 F O HOH . E HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc10 E NA NA . E NA 304 1_555 F O HOH . E HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc11 E NA NA . E NA 304 1_555 F O HOH . E HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc12 E NA NA . E NA 304 1_555 F O HOH . E HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc13 E NA NA . E NA 304 1_555 F O HOH . E HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
#
_chem_comp.formula           'C3 H9 O6 P' 
_chem_comp.formula_weight    172.074 
_chem_comp.id                G3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SN-GLYCEROL-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 G3P sing 70 n n 
C1 C2 G3P sing 71 n n 
C2 O2 G3P sing 72 n n 
C2 C3 G3P sing 73 n n 
C3 O1P G3P sing 74 n n 
O1P P G3P sing 75 n n 
O4P P G3P sing 76 n n 
O2P P G3P doub 77 n n 
O3P P G3P sing 78 n n 
O1 HO1 G3P sing 79 n n 
C1 H11 G3P sing 80 n n 
C1 H12 G3P sing 81 n n 
C2 H2 G3P sing 82 n n 
O2 HO2 G3P sing 83 n n 
C3 H31 G3P sing 84 n n 
C3 H32 G3P sing 85 n n 
O3P HOP3 G3P sing 86 n n 
O4P HOP4 G3P sing 87 n n 
#
_atom_sites.entry_id                     5T9C 
_atom_sites.fract_transf_matrix[1][1]    0.021231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA E 1 301 2 CA CA . 
C 3 G3P E 1 302 1 G3P G3P . 
D 4 PO4 E 1 303 1 PO4 PO4 . 
E 5 NA E 1 304 1 NA NA . 
F 6 HOH E 1 401 69 HOH HOH . 
F 6 HOH E 2 402 83 HOH HOH . 
F 6 HOH E 3 403 55 HOH HOH . 
F 6 HOH E 4 404 168 HOH HOH . 
F 6 HOH E 5 405 38 HOH HOH . 
F 6 HOH E 6 406 58 HOH HOH . 
F 6 HOH E 7 407 124 HOH HOH . 
F 6 HOH E 8 408 25 HOH HOH . 
F 6 HOH E 9 409 56 HOH HOH . 
F 6 HOH E 10 410 35 HOH HOH . 
F 6 HOH E 11 411 102 HOH HOH . 
F 6 HOH E 12 412 62 HOH HOH . 
F 6 HOH E 13 413 51 HOH HOH . 
F 6 HOH E 14 414 172 HOH HOH . 
F 6 HOH E 15 415 14 HOH HOH . 
F 6 HOH E 16 416 109 HOH HOH . 
F 6 HOH E 17 417 105 HOH HOH . 
F 6 HOH E 18 418 70 HOH HOH . 
F 6 HOH E 19 419 15 HOH HOH . 
F 6 HOH E 20 420 119 HOH HOH . 
F 6 HOH E 21 421 11 HOH HOH . 
F 6 HOH E 22 422 23 HOH HOH . 
F 6 HOH E 23 423 130 HOH HOH . 
F 6 HOH E 24 424 13 HOH HOH . 
F 6 HOH E 25 425 31 HOH HOH . 
F 6 HOH E 26 426 111 HOH HOH . 
F 6 HOH E 27 427 96 HOH HOH . 
F 6 HOH E 28 428 40 HOH HOH . 
F 6 HOH E 29 429 114 HOH HOH . 
F 6 HOH E 30 430 82 HOH HOH . 
F 6 HOH E 31 431 26 HOH HOH . 
F 6 HOH E 32 432 6 HOH HOH . 
F 6 HOH E 33 433 174 HOH HOH . 
F 6 HOH E 34 434 76 HOH HOH . 
F 6 HOH E 35 435 192 HOH HOH . 
F 6 HOH E 36 436 61 HOH HOH . 
F 6 HOH E 37 437 42 HOH HOH . 
F 6 HOH E 38 438 90 HOH HOH . 
F 6 HOH E 39 439 123 HOH HOH . 
F 6 HOH E 40 440 59 HOH HOH . 
F 6 HOH E 41 441 44 HOH HOH . 
F 6 HOH E 42 442 64 HOH HOH . 
F 6 HOH E 43 443 12 HOH HOH . 
F 6 HOH E 44 444 5 HOH HOH . 
F 6 HOH E 45 445 39 HOH HOH . 
F 6 HOH E 46 446 113 HOH HOH . 
F 6 HOH E 47 447 126 HOH HOH . 
F 6 HOH E 48 448 116 HOH HOH . 
F 6 HOH E 49 449 1 HOH HOH . 
F 6 HOH E 50 450 18 HOH HOH . 
F 6 HOH E 51 451 20 HOH HOH . 
F 6 HOH E 52 452 30 HOH HOH . 
F 6 HOH E 53 453 46 HOH HOH . 
F 6 HOH E 54 454 45 HOH HOH . 
F 6 HOH E 55 455 74 HOH HOH . 
F 6 HOH E 56 456 99 HOH HOH . 
F 6 HOH E 57 457 108 HOH HOH . 
F 6 HOH E 58 458 48 HOH HOH . 
F 6 HOH E 59 459 100 HOH HOH . 
F 6 HOH E 60 460 27 HOH HOH . 
F 6 HOH E 61 461 72 HOH HOH . 
F 6 HOH E 62 462 32 HOH HOH . 
F 6 HOH E 63 463 21 HOH HOH . 
F 6 HOH E 64 464 29 HOH HOH . 
F 6 HOH E 65 465 9 HOH HOH . 
F 6 HOH E 66 466 77 HOH HOH . 
F 6 HOH E 67 467 10 HOH HOH . 
F 6 HOH E 68 468 3 HOH HOH . 
F 6 HOH E 69 469 49 HOH HOH . 
F 6 HOH E 70 470 19 HOH HOH . 
F 6 HOH E 71 471 4 HOH HOH . 
F 6 HOH E 72 472 117 HOH HOH . 
F 6 HOH E 73 473 50 HOH HOH . 
F 6 HOH E 74 474 22 HOH HOH . 
F 6 HOH E 75 475 106 HOH HOH . 
F 6 HOH E 76 476 136 HOH HOH . 
F 6 HOH E 77 477 104 HOH HOH . 
F 6 HOH E 78 478 87 HOH HOH . 
F 6 HOH E 79 479 148 HOH HOH . 
F 6 HOH E 80 480 127 HOH HOH . 
F 6 HOH E 81 481 101 HOH HOH . 
F 6 HOH E 82 482 78 HOH HOH . 
F 6 HOH E 83 483 2 HOH HOH . 
F 6 HOH E 84 484 91 HOH HOH . 
F 6 HOH E 85 485 41 HOH HOH . 
F 6 HOH E 86 486 160 HOH HOH . 
F 6 HOH E 87 487 125 HOH HOH . 
F 6 HOH E 88 488 138 HOH HOH . 
F 6 HOH E 89 489 60 HOH HOH . 
F 6 HOH E 90 490 24 HOH HOH . 
F 6 HOH E 91 491 207 HOH HOH . 
F 6 HOH E 92 492 8 HOH HOH . 
F 6 HOH E 93 493 86 HOH HOH . 
F 6 HOH E 94 494 103 HOH HOH . 
F 6 HOH E 95 495 57 HOH HOH . 
F 6 HOH E 96 496 7 HOH HOH . 
F 6 HOH E 97 497 37 HOH HOH . 
F 6 HOH E 98 498 165 HOH HOH . 
F 6 HOH E 99 499 122 HOH HOH . 
F 6 HOH E 100 500 63 HOH HOH . 
F 6 HOH E 101 501 107 HOH HOH . 
F 6 HOH E 102 502 16 HOH HOH . 
F 6 HOH E 103 503 88 HOH HOH . 
F 6 HOH E 104 504 129 HOH HOH . 
F 6 HOH E 105 505 94 HOH HOH . 
F 6 HOH E 106 506 34 HOH HOH . 
F 6 HOH E 107 507 115 HOH HOH . 
F 6 HOH E 108 508 53 HOH HOH . 
F 6 HOH E 109 509 144 HOH HOH . 
F 6 HOH E 110 510 36 HOH HOH . 
F 6 HOH E 111 511 149 HOH HOH . 
F 6 HOH E 112 512 17 HOH HOH . 
F 6 HOH E 113 513 65 HOH HOH . 
F 6 HOH E 114 514 73 HOH HOH . 
F 6 HOH E 115 515 68 HOH HOH . 
F 6 HOH E 116 516 43 HOH HOH . 
F 6 HOH E 117 517 156 HOH HOH . 
F 6 HOH E 118 518 98 HOH HOH . 
F 6 HOH E 119 519 28 HOH HOH . 
F 6 HOH E 120 520 140 HOH HOH . 
F 6 HOH E 121 521 92 HOH HOH . 
F 6 HOH E 122 522 153 HOH HOH . 
F 6 HOH E 123 523 155 HOH HOH . 
F 6 HOH E 124 524 110 HOH HOH . 
F 6 HOH E 125 525 135 HOH HOH . 
F 6 HOH E 126 526 85 HOH HOH . 
F 6 HOH E 127 527 33 HOH HOH . 
F 6 HOH E 128 528 166 HOH HOH . 
F 6 HOH E 129 529 143 HOH HOH . 
F 6 HOH E 130 530 164 HOH HOH . 
F 6 HOH E 131 531 198 HOH HOH . 
F 6 HOH E 132 532 203 HOH HOH . 
F 6 HOH E 133 533 184 HOH HOH . 
F 6 HOH E 134 534 181 HOH HOH . 
F 6 HOH E 135 535 89 HOH HOH . 
F 6 HOH E 136 536 93 HOH HOH . 
F 6 HOH E 137 537 175 HOH HOH . 
F 6 HOH E 138 538 177 HOH HOH . 
F 6 HOH E 139 539 169 HOH HOH . 
F 6 HOH E 140 540 131 HOH HOH . 
F 6 HOH E 141 541 133 HOH HOH . 
F 6 HOH E 142 542 79 HOH HOH . 
F 6 HOH E 143 543 201 HOH HOH . 
F 6 HOH E 144 544 180 HOH HOH . 
F 6 HOH E 145 545 179 HOH HOH . 
F 6 HOH E 146 546 200 HOH HOH . 
F 6 HOH E 147 547 202 HOH HOH . 
F 6 HOH E 148 548 120 HOH HOH . 
F 6 HOH E 149 549 95 HOH HOH . 
F 6 HOH E 150 550 128 HOH HOH . 
F 6 HOH E 151 551 84 HOH HOH . 
F 6 HOH E 152 552 75 HOH HOH . 
F 6 HOH E 153 553 81 HOH HOH . 
F 6 HOH E 154 554 67 HOH HOH . 
F 6 HOH E 155 555 187 HOH HOH . 
F 6 HOH E 156 556 54 HOH HOH . 
F 6 HOH E 157 557 158 HOH HOH . 
F 6 HOH E 158 558 66 HOH HOH . 
F 6 HOH E 159 559 71 HOH HOH . 
F 6 HOH E 160 560 97 HOH HOH . 
F 6 HOH E 161 561 118 HOH HOH . 
F 6 HOH E 162 562 188 HOH HOH . 
F 6 HOH E 163 563 142 HOH HOH . 
F 6 HOH E 164 564 147 HOH HOH . 
F 6 HOH E 165 565 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 G3P . . . C 3 -38.952 5.65 98.083 1 18.06 ? O1 G3P 302 E 1 
HETATM 2 C C1 G3P . . . C 3 -38.927 6.012 96.697 1 16.27 ? C1 G3P 302 E 1 
HETATM 3 C C2 G3P . . . C 3 -40.356 6.294 96.3 1 12.96 ? C2 G3P 302 E 1 
HETATM 4 O O2 G3P . . . C 3 -41.172 5.219 96.764 1 19.03 ? O2 G3P 302 E 1 
HETATM 5 C C3 G3P . . . C 3 -40.784 7.639 96.871 1 14.3 ? C3 G3P 302 E 1 
HETATM 6 O O1P G3P . . . C 3 -42.165 7.873 96.649 1 17.92 ? O1P G3P 302 E 1 
HETATM 7 O O4P G3P . . . C 3 -44.478 8.164 97.593 1 20.71 ? O4P G3P 302 E 1 
HETATM 8 O O2P G3P . . . C 3 -43.84 6.008 96.479 1 18.8 1 O2P G3P 302 E 1 
HETATM 9 O O3P G3P . . . C 3 -42.864 6.623 98.702 1 16.91 1 O3P G3P 302 E 1 
HETATM 10 P P G3P . . . C 3 -43.377 7.143 97.372 1 18.07 ? P G3P 302 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#