data_5T9C # _model_server_result.job_id rJwYwOR_5oe_pgaAzqLfmA _model_server_result.datetime_utc '2024-11-26 23:05:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5T9C # _exptl.entry_id 5T9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T9C _cell.length_a 47.101 _cell.length_b 58.24 _cell.length_c 87.565 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 45 E GLU 70 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A OD1 ASP 47 E ASP 72 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc3 A O ASP 65 E ASP 90 1_555 E NA NA . E NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc4 A O THR 68 E THR 93 1_555 E NA NA . E NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 A OE1 GLU 127 E GLU 152 1_555 B CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B CA CA . E CA 301 1_555 C O1 G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 B CA CA . E CA 301 1_555 C O2 G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 B CA CA . E CA 301 1_555 C O3P G3P . E G3P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 B CA CA . E CA 301 1_555 F O HOH . E HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc10 E NA NA . E NA 304 1_555 F O HOH . E HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc11 E NA NA . E NA 304 1_555 F O HOH . E HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc12 E NA NA . E NA 304 1_555 F O HOH . E HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 E NA NA . E NA 304 1_555 F O HOH . E HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 70 n n C1 C2 G3P sing 71 n n C2 O2 G3P sing 72 n n C2 C3 G3P sing 73 n n C3 O1P G3P sing 74 n n O1P P G3P sing 75 n n O4P P G3P sing 76 n n O2P P G3P doub 77 n n O3P P G3P sing 78 n n O1 HO1 G3P sing 79 n n C1 H11 G3P sing 80 n n C1 H12 G3P sing 81 n n C2 H2 G3P sing 82 n n O2 HO2 G3P sing 83 n n C3 H31 G3P sing 84 n n C3 H32 G3P sing 85 n n O3P HOP3 G3P sing 86 n n O4P HOP4 G3P sing 87 n n # _atom_sites.entry_id 5T9C _atom_sites.fract_transf_matrix[1][1] 0.021231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA E 1 301 2 CA CA . C 3 G3P E 1 302 1 G3P G3P . D 4 PO4 E 1 303 1 PO4 PO4 . E 5 NA E 1 304 1 NA NA . F 6 HOH E 1 401 69 HOH HOH . F 6 HOH E 2 402 83 HOH HOH . F 6 HOH E 3 403 55 HOH HOH . F 6 HOH E 4 404 168 HOH HOH . F 6 HOH E 5 405 38 HOH HOH . F 6 HOH E 6 406 58 HOH HOH . F 6 HOH E 7 407 124 HOH HOH . F 6 HOH E 8 408 25 HOH HOH . F 6 HOH E 9 409 56 HOH HOH . F 6 HOH E 10 410 35 HOH HOH . F 6 HOH E 11 411 102 HOH HOH . F 6 HOH E 12 412 62 HOH HOH . F 6 HOH E 13 413 51 HOH HOH . F 6 HOH E 14 414 172 HOH HOH . F 6 HOH E 15 415 14 HOH HOH . F 6 HOH E 16 416 109 HOH HOH . F 6 HOH E 17 417 105 HOH HOH . F 6 HOH E 18 418 70 HOH HOH . F 6 HOH E 19 419 15 HOH HOH . F 6 HOH E 20 420 119 HOH HOH . F 6 HOH E 21 421 11 HOH HOH . F 6 HOH E 22 422 23 HOH HOH . F 6 HOH E 23 423 130 HOH HOH . F 6 HOH E 24 424 13 HOH HOH . F 6 HOH E 25 425 31 HOH HOH . F 6 HOH E 26 426 111 HOH HOH . F 6 HOH E 27 427 96 HOH HOH . F 6 HOH E 28 428 40 HOH HOH . F 6 HOH E 29 429 114 HOH HOH . F 6 HOH E 30 430 82 HOH HOH . F 6 HOH E 31 431 26 HOH HOH . F 6 HOH E 32 432 6 HOH HOH . F 6 HOH E 33 433 174 HOH HOH . F 6 HOH E 34 434 76 HOH HOH . F 6 HOH E 35 435 192 HOH HOH . F 6 HOH E 36 436 61 HOH HOH . F 6 HOH E 37 437 42 HOH HOH . F 6 HOH E 38 438 90 HOH HOH . F 6 HOH E 39 439 123 HOH HOH . F 6 HOH E 40 440 59 HOH HOH . F 6 HOH E 41 441 44 HOH HOH . F 6 HOH E 42 442 64 HOH HOH . F 6 HOH E 43 443 12 HOH HOH . F 6 HOH E 44 444 5 HOH HOH . F 6 HOH E 45 445 39 HOH HOH . F 6 HOH E 46 446 113 HOH HOH . F 6 HOH E 47 447 126 HOH HOH . F 6 HOH E 48 448 116 HOH HOH . F 6 HOH E 49 449 1 HOH HOH . F 6 HOH E 50 450 18 HOH HOH . F 6 HOH E 51 451 20 HOH HOH . F 6 HOH E 52 452 30 HOH HOH . F 6 HOH E 53 453 46 HOH HOH . F 6 HOH E 54 454 45 HOH HOH . F 6 HOH E 55 455 74 HOH HOH . F 6 HOH E 56 456 99 HOH HOH . F 6 HOH E 57 457 108 HOH HOH . F 6 HOH E 58 458 48 HOH HOH . F 6 HOH E 59 459 100 HOH HOH . F 6 HOH E 60 460 27 HOH HOH . F 6 HOH E 61 461 72 HOH HOH . F 6 HOH E 62 462 32 HOH HOH . F 6 HOH E 63 463 21 HOH HOH . F 6 HOH E 64 464 29 HOH HOH . F 6 HOH E 65 465 9 HOH HOH . F 6 HOH E 66 466 77 HOH HOH . F 6 HOH E 67 467 10 HOH HOH . F 6 HOH E 68 468 3 HOH HOH . F 6 HOH E 69 469 49 HOH HOH . F 6 HOH E 70 470 19 HOH HOH . F 6 HOH E 71 471 4 HOH HOH . F 6 HOH E 72 472 117 HOH HOH . F 6 HOH E 73 473 50 HOH HOH . F 6 HOH E 74 474 22 HOH HOH . F 6 HOH E 75 475 106 HOH HOH . F 6 HOH E 76 476 136 HOH HOH . F 6 HOH E 77 477 104 HOH HOH . F 6 HOH E 78 478 87 HOH HOH . F 6 HOH E 79 479 148 HOH HOH . F 6 HOH E 80 480 127 HOH HOH . F 6 HOH E 81 481 101 HOH HOH . F 6 HOH E 82 482 78 HOH HOH . F 6 HOH E 83 483 2 HOH HOH . F 6 HOH E 84 484 91 HOH HOH . F 6 HOH E 85 485 41 HOH HOH . F 6 HOH E 86 486 160 HOH HOH . F 6 HOH E 87 487 125 HOH HOH . F 6 HOH E 88 488 138 HOH HOH . F 6 HOH E 89 489 60 HOH HOH . F 6 HOH E 90 490 24 HOH HOH . F 6 HOH E 91 491 207 HOH HOH . F 6 HOH E 92 492 8 HOH HOH . F 6 HOH E 93 493 86 HOH HOH . F 6 HOH E 94 494 103 HOH HOH . F 6 HOH E 95 495 57 HOH HOH . F 6 HOH E 96 496 7 HOH HOH . F 6 HOH E 97 497 37 HOH HOH . F 6 HOH E 98 498 165 HOH HOH . F 6 HOH E 99 499 122 HOH HOH . F 6 HOH E 100 500 63 HOH HOH . F 6 HOH E 101 501 107 HOH HOH . F 6 HOH E 102 502 16 HOH HOH . F 6 HOH E 103 503 88 HOH HOH . F 6 HOH E 104 504 129 HOH HOH . F 6 HOH E 105 505 94 HOH HOH . F 6 HOH E 106 506 34 HOH HOH . F 6 HOH E 107 507 115 HOH HOH . F 6 HOH E 108 508 53 HOH HOH . F 6 HOH E 109 509 144 HOH HOH . F 6 HOH E 110 510 36 HOH HOH . F 6 HOH E 111 511 149 HOH HOH . F 6 HOH E 112 512 17 HOH HOH . F 6 HOH E 113 513 65 HOH HOH . F 6 HOH E 114 514 73 HOH HOH . F 6 HOH E 115 515 68 HOH HOH . F 6 HOH E 116 516 43 HOH HOH . F 6 HOH E 117 517 156 HOH HOH . F 6 HOH E 118 518 98 HOH HOH . F 6 HOH E 119 519 28 HOH HOH . F 6 HOH E 120 520 140 HOH HOH . F 6 HOH E 121 521 92 HOH HOH . F 6 HOH E 122 522 153 HOH HOH . F 6 HOH E 123 523 155 HOH HOH . F 6 HOH E 124 524 110 HOH HOH . F 6 HOH E 125 525 135 HOH HOH . F 6 HOH E 126 526 85 HOH HOH . F 6 HOH E 127 527 33 HOH HOH . F 6 HOH E 128 528 166 HOH HOH . F 6 HOH E 129 529 143 HOH HOH . F 6 HOH E 130 530 164 HOH HOH . F 6 HOH E 131 531 198 HOH HOH . F 6 HOH E 132 532 203 HOH HOH . F 6 HOH E 133 533 184 HOH HOH . F 6 HOH E 134 534 181 HOH HOH . F 6 HOH E 135 535 89 HOH HOH . F 6 HOH E 136 536 93 HOH HOH . F 6 HOH E 137 537 175 HOH HOH . F 6 HOH E 138 538 177 HOH HOH . F 6 HOH E 139 539 169 HOH HOH . F 6 HOH E 140 540 131 HOH HOH . F 6 HOH E 141 541 133 HOH HOH . F 6 HOH E 142 542 79 HOH HOH . F 6 HOH E 143 543 201 HOH HOH . F 6 HOH E 144 544 180 HOH HOH . F 6 HOH E 145 545 179 HOH HOH . F 6 HOH E 146 546 200 HOH HOH . F 6 HOH E 147 547 202 HOH HOH . F 6 HOH E 148 548 120 HOH HOH . F 6 HOH E 149 549 95 HOH HOH . F 6 HOH E 150 550 128 HOH HOH . F 6 HOH E 151 551 84 HOH HOH . F 6 HOH E 152 552 75 HOH HOH . F 6 HOH E 153 553 81 HOH HOH . F 6 HOH E 154 554 67 HOH HOH . F 6 HOH E 155 555 187 HOH HOH . F 6 HOH E 156 556 54 HOH HOH . F 6 HOH E 157 557 158 HOH HOH . F 6 HOH E 158 558 66 HOH HOH . F 6 HOH E 159 559 71 HOH HOH . F 6 HOH E 160 560 97 HOH HOH . F 6 HOH E 161 561 118 HOH HOH . F 6 HOH E 162 562 188 HOH HOH . F 6 HOH E 163 563 142 HOH HOH . F 6 HOH E 164 564 147 HOH HOH . F 6 HOH E 165 565 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . C 3 -38.952 5.65 98.083 1 18.06 ? O1 G3P 302 E 1 HETATM 2 C C1 G3P . . . C 3 -38.927 6.012 96.697 1 16.27 ? C1 G3P 302 E 1 HETATM 3 C C2 G3P . . . C 3 -40.356 6.294 96.3 1 12.96 ? C2 G3P 302 E 1 HETATM 4 O O2 G3P . . . C 3 -41.172 5.219 96.764 1 19.03 ? O2 G3P 302 E 1 HETATM 5 C C3 G3P . . . C 3 -40.784 7.639 96.871 1 14.3 ? C3 G3P 302 E 1 HETATM 6 O O1P G3P . . . C 3 -42.165 7.873 96.649 1 17.92 ? O1P G3P 302 E 1 HETATM 7 O O4P G3P . . . C 3 -44.478 8.164 97.593 1 20.71 ? O4P G3P 302 E 1 HETATM 8 O O2P G3P . . . C 3 -43.84 6.008 96.479 1 18.8 1 O2P G3P 302 E 1 HETATM 9 O O3P G3P . . . C 3 -42.864 6.623 98.702 1 16.91 1 O3P G3P 302 E 1 HETATM 10 P P G3P . . . C 3 -43.377 7.143 97.372 1 18.07 ? P G3P 302 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #