data_5T9I # _model_server_result.job_id mKpy-oj6WLufHpeKddpoSA _model_server_result.datetime_utc '2024-10-28 12:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5T9I # _exptl.entry_id 5T9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T9I _cell.length_a 93.713 _cell.length_b 93.713 _cell.length_c 131.233 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C VAL . A VAL 1001 1_555 H N LYS . A LYS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 sing metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc8 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc9 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc10 A OE1 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc12 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc13 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc14 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc15 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc16 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc17 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc18 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc19 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc20 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc21 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc22 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc23 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc24 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc25 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc26 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc27 B CA CA . A CA 401 1_555 I O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc28 C CA CA . A CA 402 1_555 I O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc29 C CA CA . A CA 402 1_555 I O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc30 D CA CA . A CA 403 1_555 I O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc31 D CA CA . A CA 403 1_555 I O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc32 D CA CA . A CA 403 1_555 I O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc33 E CA CA . A CA 404 1_555 I O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc34 E CA CA . A CA 404 1_555 I O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc35 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 599 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5T9I _atom_sites.fract_transf_matrix[1][1] 0.010671 _atom_sites.fract_transf_matrix[1][2] 0.006161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 VAL A 1 1001 1001 VAL VAL . H 5 LYS A 1 1002 1002 LYS LYS . I 6 HOH A 1 501 4 HOH HOH . I 6 HOH A 2 502 14 HOH HOH . I 6 HOH A 3 503 1102 HOH HOH . I 6 HOH A 4 504 1065 HOH HOH . I 6 HOH A 5 505 1072 HOH HOH . I 6 HOH A 6 506 1083 HOH HOH . I 6 HOH A 7 507 1044 HOH HOH . I 6 HOH A 8 508 25 HOH HOH . I 6 HOH A 9 509 11 HOH HOH . I 6 HOH A 10 510 1036 HOH HOH . I 6 HOH A 11 511 1037 HOH HOH . I 6 HOH A 12 512 1080 HOH HOH . I 6 HOH A 13 513 1058 HOH HOH . I 6 HOH A 14 514 1028 HOH HOH . I 6 HOH A 15 515 1029 HOH HOH . I 6 HOH A 16 516 1019 HOH HOH . I 6 HOH A 17 517 1032 HOH HOH . I 6 HOH A 18 518 1047 HOH HOH . I 6 HOH A 19 519 1015 HOH HOH . I 6 HOH A 20 520 1010 HOH HOH . I 6 HOH A 21 521 1074 HOH HOH . I 6 HOH A 22 522 1063 HOH HOH . I 6 HOH A 23 523 1006 HOH HOH . I 6 HOH A 24 524 1041 HOH HOH . I 6 HOH A 25 525 1017 HOH HOH . I 6 HOH A 26 526 8 HOH HOH . I 6 HOH A 27 527 1093 HOH HOH . I 6 HOH A 28 528 1049 HOH HOH . I 6 HOH A 29 529 1118 HOH HOH . I 6 HOH A 30 530 1008 HOH HOH . I 6 HOH A 31 531 1073 HOH HOH . I 6 HOH A 32 532 1003 HOH HOH . I 6 HOH A 33 533 1122 HOH HOH . I 6 HOH A 34 534 1050 HOH HOH . I 6 HOH A 35 535 22 HOH HOH . I 6 HOH A 36 536 1119 HOH HOH . I 6 HOH A 37 537 1105 HOH HOH . I 6 HOH A 38 538 1009 HOH HOH . I 6 HOH A 39 539 1113 HOH HOH . I 6 HOH A 40 540 9 HOH HOH . I 6 HOH A 41 541 1039 HOH HOH . I 6 HOH A 42 542 27 HOH HOH . I 6 HOH A 43 543 1120 HOH HOH . I 6 HOH A 44 544 1070 HOH HOH . I 6 HOH A 45 545 1082 HOH HOH . I 6 HOH A 46 546 1031 HOH HOH . I 6 HOH A 47 547 1038 HOH HOH . I 6 HOH A 48 548 1011 HOH HOH . I 6 HOH A 49 549 1097 HOH HOH . I 6 HOH A 50 550 1125 HOH HOH . I 6 HOH A 51 551 5 HOH HOH . I 6 HOH A 52 552 1056 HOH HOH . I 6 HOH A 53 553 1052 HOH HOH . I 6 HOH A 54 554 1048 HOH HOH . I 6 HOH A 55 555 1066 HOH HOH . I 6 HOH A 56 556 1067 HOH HOH . I 6 HOH A 57 557 1024 HOH HOH . I 6 HOH A 58 558 1071 HOH HOH . I 6 HOH A 59 559 26 HOH HOH . I 6 HOH A 60 560 1061 HOH HOH . I 6 HOH A 61 561 1043 HOH HOH . I 6 HOH A 62 562 1013 HOH HOH . I 6 HOH A 63 563 1110 HOH HOH . I 6 HOH A 64 564 1078 HOH HOH . I 6 HOH A 65 565 1020 HOH HOH . I 6 HOH A 66 566 1014 HOH HOH . I 6 HOH A 67 567 1084 HOH HOH . I 6 HOH A 68 568 1091 HOH HOH . I 6 HOH A 69 569 1030 HOH HOH . I 6 HOH A 70 570 1059 HOH HOH . I 6 HOH A 71 571 1025 HOH HOH . I 6 HOH A 72 572 1068 HOH HOH . I 6 HOH A 73 573 1081 HOH HOH . I 6 HOH A 74 574 1040 HOH HOH . I 6 HOH A 75 575 28 HOH HOH . I 6 HOH A 76 576 1124 HOH HOH . I 6 HOH A 77 577 6 HOH HOH . I 6 HOH A 78 578 3 HOH HOH . I 6 HOH A 79 579 1094 HOH HOH . I 6 HOH A 80 580 1016 HOH HOH . I 6 HOH A 81 581 1055 HOH HOH . I 6 HOH A 82 582 1099 HOH HOH . I 6 HOH A 83 583 1069 HOH HOH . I 6 HOH A 84 584 7 HOH HOH . I 6 HOH A 85 585 1079 HOH HOH . I 6 HOH A 86 586 1046 HOH HOH . I 6 HOH A 87 587 18 HOH HOH . I 6 HOH A 88 588 29 HOH HOH . I 6 HOH A 89 589 1051 HOH HOH . I 6 HOH A 90 590 1096 HOH HOH . I 6 HOH A 91 591 1012 HOH HOH . I 6 HOH A 92 592 1057 HOH HOH . I 6 HOH A 93 593 1007 HOH HOH . I 6 HOH A 94 594 1004 HOH HOH . I 6 HOH A 95 595 1095 HOH HOH . I 6 HOH A 96 596 1023 HOH HOH . I 6 HOH A 97 597 1077 HOH HOH . I 6 HOH A 98 598 1018 HOH HOH . I 6 HOH A 99 599 1 HOH HOH . I 6 HOH A 100 600 10 HOH HOH . I 6 HOH A 101 601 1026 HOH HOH . I 6 HOH A 102 602 1042 HOH HOH . I 6 HOH A 103 603 1098 HOH HOH . I 6 HOH A 104 604 1075 HOH HOH . I 6 HOH A 105 605 1111 HOH HOH . I 6 HOH A 106 606 1076 HOH HOH . I 6 HOH A 107 607 1054 HOH HOH . I 6 HOH A 108 608 1064 HOH HOH . I 6 HOH A 109 609 1114 HOH HOH . I 6 HOH A 110 610 1104 HOH HOH . I 6 HOH A 111 611 1100 HOH HOH . I 6 HOH A 112 612 1106 HOH HOH . I 6 HOH A 113 613 1060 HOH HOH . I 6 HOH A 114 614 1045 HOH HOH . I 6 HOH A 115 615 1088 HOH HOH . I 6 HOH A 116 616 1116 HOH HOH . I 6 HOH A 117 617 1115 HOH HOH . I 6 HOH A 118 618 1034 HOH HOH . I 6 HOH A 119 619 1085 HOH HOH . I 6 HOH A 120 620 23 HOH HOH . I 6 HOH A 121 621 1033 HOH HOH . I 6 HOH A 122 622 1121 HOH HOH . I 6 HOH A 123 623 1126 HOH HOH . I 6 HOH A 124 624 1103 HOH HOH . I 6 HOH A 125 625 1107 HOH HOH . I 6 HOH A 126 626 1035 HOH HOH . I 6 HOH A 127 627 19 HOH HOH . I 6 HOH A 128 628 1053 HOH HOH . I 6 HOH A 129 629 2 HOH HOH . I 6 HOH A 130 630 1022 HOH HOH . I 6 HOH A 131 631 1027 HOH HOH . I 6 HOH A 132 632 1117 HOH HOH . I 6 HOH A 133 633 13 HOH HOH . I 6 HOH A 134 634 1087 HOH HOH . I 6 HOH A 135 635 1092 HOH HOH . I 6 HOH A 136 636 1086 HOH HOH . I 6 HOH A 137 637 20 HOH HOH . I 6 HOH A 138 638 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.036 _atom_site.Cartn_y 36.528 _atom_site.Cartn_z -7.07 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #