data_5T9Q # _model_server_result.job_id 1EfTHSd-khRVXBHmD1eFkg _model_server_result.datetime_utc '2024-12-02 21:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5T9Q # _exptl.entry_id 5T9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T9Q _cell.length_a 93.708 _cell.length_b 93.708 _cell.length_c 130.866 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C VAL . A VAL 1001 1_555 H N LYS . A LYS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 sing metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc6 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc7 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc8 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 A OE1 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc11 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc12 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc13 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc14 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc15 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc16 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc17 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc18 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc19 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc20 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc21 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc22 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc23 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc24 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc25 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc26 B CA CA . A CA 401 1_555 J O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc27 C CA CA . A CA 402 1_555 J O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc28 D CA CA . A CA 403 1_555 J O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc29 D CA CA . A CA 403 1_555 J O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc30 D CA CA . A CA 403 1_555 J O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc31 E CA CA . A CA 404 1_555 J O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc32 E CA CA . A CA 404 1_555 J O HOH . A HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc33 F ZN ZN . A ZN 405 1_555 I O2 PO4 . A PO4 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 5T9Q _atom_sites.fract_transf_matrix[1][1] 0.010671 _atom_sites.fract_transf_matrix[1][2] 0.006161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 VAL A 1 1001 1001 VAL VAL . H 5 LYS A 1 1002 1002 LYS LYS . I 6 PO4 A 1 408 1 PO4 PO4 . J 7 HOH A 1 501 1009 HOH HOH . J 7 HOH A 2 502 22 HOH HOH . J 7 HOH A 3 503 1 HOH HOH . J 7 HOH A 4 504 52 HOH HOH . J 7 HOH A 5 505 1047 HOH HOH . J 7 HOH A 6 506 1038 HOH HOH . J 7 HOH A 7 507 1114 HOH HOH . J 7 HOH A 8 508 1004 HOH HOH . J 7 HOH A 9 509 1011 HOH HOH . J 7 HOH A 10 510 1031 HOH HOH . J 7 HOH A 11 511 1115 HOH HOH . J 7 HOH A 12 512 1041 HOH HOH . J 7 HOH A 13 513 1022 HOH HOH . J 7 HOH A 14 514 1072 HOH HOH . J 7 HOH A 15 515 1079 HOH HOH . J 7 HOH A 16 516 1050 HOH HOH . J 7 HOH A 17 517 48 HOH HOH . J 7 HOH A 18 518 1020 HOH HOH . J 7 HOH A 19 519 1008 HOH HOH . J 7 HOH A 20 520 1029 HOH HOH . J 7 HOH A 21 521 1012 HOH HOH . J 7 HOH A 22 522 1121 HOH HOH . J 7 HOH A 23 523 20 HOH HOH . J 7 HOH A 24 524 3 HOH HOH . J 7 HOH A 25 525 1060 HOH HOH . J 7 HOH A 26 526 1015 HOH HOH . J 7 HOH A 27 527 1016 HOH HOH . J 7 HOH A 28 528 1010 HOH HOH . J 7 HOH A 29 529 1057 HOH HOH . J 7 HOH A 30 530 1003 HOH HOH . J 7 HOH A 31 531 1093 HOH HOH . J 7 HOH A 32 532 1123 HOH HOH . J 7 HOH A 33 533 1064 HOH HOH . J 7 HOH A 34 534 1122 HOH HOH . J 7 HOH A 35 535 16 HOH HOH . J 7 HOH A 36 536 1051 HOH HOH . J 7 HOH A 37 537 1053 HOH HOH . J 7 HOH A 38 538 5 HOH HOH . J 7 HOH A 39 539 1088 HOH HOH . J 7 HOH A 40 540 1059 HOH HOH . J 7 HOH A 41 541 39 HOH HOH . J 7 HOH A 42 542 19 HOH HOH . J 7 HOH A 43 543 1097 HOH HOH . J 7 HOH A 44 544 1110 HOH HOH . J 7 HOH A 45 545 1030 HOH HOH . J 7 HOH A 46 546 1066 HOH HOH . J 7 HOH A 47 547 34 HOH HOH . J 7 HOH A 48 548 9 HOH HOH . J 7 HOH A 49 549 1028 HOH HOH . J 7 HOH A 50 550 25 HOH HOH . J 7 HOH A 51 551 1023 HOH HOH . J 7 HOH A 52 552 1068 HOH HOH . J 7 HOH A 53 553 15 HOH HOH . J 7 HOH A 54 554 1103 HOH HOH . J 7 HOH A 55 555 1049 HOH HOH . J 7 HOH A 56 556 28 HOH HOH . J 7 HOH A 57 557 1074 HOH HOH . J 7 HOH A 58 558 51 HOH HOH . J 7 HOH A 59 559 1039 HOH HOH . J 7 HOH A 60 560 1099 HOH HOH . J 7 HOH A 61 561 1107 HOH HOH . J 7 HOH A 62 562 1034 HOH HOH . J 7 HOH A 63 563 1052 HOH HOH . J 7 HOH A 64 564 1056 HOH HOH . J 7 HOH A 65 565 1024 HOH HOH . J 7 HOH A 66 566 1035 HOH HOH . J 7 HOH A 67 567 43 HOH HOH . J 7 HOH A 68 568 1071 HOH HOH . J 7 HOH A 69 569 1082 HOH HOH . J 7 HOH A 70 570 32 HOH HOH . J 7 HOH A 71 571 27 HOH HOH . J 7 HOH A 72 572 1018 HOH HOH . J 7 HOH A 73 573 1061 HOH HOH . J 7 HOH A 74 574 1007 HOH HOH . J 7 HOH A 75 575 1096 HOH HOH . J 7 HOH A 76 576 50 HOH HOH . J 7 HOH A 77 577 12 HOH HOH . J 7 HOH A 78 578 1040 HOH HOH . J 7 HOH A 79 579 31 HOH HOH . J 7 HOH A 80 580 1027 HOH HOH . J 7 HOH A 81 581 1101 HOH HOH . J 7 HOH A 82 582 1025 HOH HOH . J 7 HOH A 83 583 1026 HOH HOH . J 7 HOH A 84 584 1005 HOH HOH . J 7 HOH A 85 585 24 HOH HOH . J 7 HOH A 86 586 1118 HOH HOH . J 7 HOH A 87 587 1119 HOH HOH . J 7 HOH A 88 588 1042 HOH HOH . J 7 HOH A 89 589 49 HOH HOH . J 7 HOH A 90 590 1013 HOH HOH . J 7 HOH A 91 591 1054 HOH HOH . J 7 HOH A 92 592 1102 HOH HOH . J 7 HOH A 93 593 23 HOH HOH . J 7 HOH A 94 594 1014 HOH HOH . J 7 HOH A 95 595 1069 HOH HOH . J 7 HOH A 96 596 1111 HOH HOH . J 7 HOH A 97 597 1067 HOH HOH . J 7 HOH A 98 598 1006 HOH HOH . J 7 HOH A 99 599 1106 HOH HOH . J 7 HOH A 100 600 1058 HOH HOH . J 7 HOH A 101 601 1033 HOH HOH . J 7 HOH A 102 602 1087 HOH HOH . J 7 HOH A 103 603 1083 HOH HOH . J 7 HOH A 104 604 4 HOH HOH . J 7 HOH A 105 605 1017 HOH HOH . J 7 HOH A 106 606 1045 HOH HOH . J 7 HOH A 107 607 13 HOH HOH . J 7 HOH A 108 608 1046 HOH HOH . J 7 HOH A 109 609 1113 HOH HOH . J 7 HOH A 110 610 1108 HOH HOH . J 7 HOH A 111 611 1117 HOH HOH . J 7 HOH A 112 612 1019 HOH HOH . J 7 HOH A 113 613 1036 HOH HOH . J 7 HOH A 114 614 10 HOH HOH . J 7 HOH A 115 615 1085 HOH HOH . J 7 HOH A 116 616 1100 HOH HOH . J 7 HOH A 117 617 1044 HOH HOH . J 7 HOH A 118 618 1048 HOH HOH . J 7 HOH A 119 619 17 HOH HOH . J 7 HOH A 120 620 42 HOH HOH . J 7 HOH A 121 621 1091 HOH HOH . J 7 HOH A 122 622 18 HOH HOH . J 7 HOH A 123 623 45 HOH HOH . J 7 HOH A 124 624 29 HOH HOH . J 7 HOH A 125 625 1021 HOH HOH . J 7 HOH A 126 626 2 HOH HOH . J 7 HOH A 127 627 14 HOH HOH . J 7 HOH A 128 628 1065 HOH HOH . J 7 HOH A 129 629 21 HOH HOH . J 7 HOH A 130 630 46 HOH HOH . J 7 HOH A 131 631 1105 HOH HOH . J 7 HOH A 132 632 8 HOH HOH . J 7 HOH A 133 633 1084 HOH HOH . J 7 HOH A 134 634 1124 HOH HOH . J 7 HOH A 135 635 1032 HOH HOH . J 7 HOH A 136 636 7 HOH HOH . J 7 HOH A 137 637 1125 HOH HOH . J 7 HOH A 138 638 36 HOH HOH . J 7 HOH A 139 639 40 HOH HOH . J 7 HOH A 140 640 11 HOH HOH . J 7 HOH A 141 641 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 6 -11.558 -39.098 -7.159 1 34.77 ? P PO4 408 A 1 HETATM 2 O O1 PO4 . . . I 6 -11.672 -39.44 -8.625 1 32.4 ? O1 PO4 408 A 1 HETATM 3 O O2 PO4 . . . I 6 -10.314 -38.283 -6.967 1 28.23 ? O2 PO4 408 A 1 HETATM 4 O O3 PO4 . . . I 6 -11.493 -40.318 -6.264 1 38.68 ? O3 PO4 408 A 1 HETATM 5 O O4 PO4 . . . I 6 -12.704 -38.243 -6.678 1 36.8 ? O4 PO4 408 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #