data_5T9V
#
_model_server_result.job_id            swdlHbdz9fkYv3zT1XY7cQ 
_model_server_result.datetime_utc      '2024-11-23 01:56:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t9v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":5101}' 
#
_entry.id    5T9V 
#
_exptl.entry_id    5T9V 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T9V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T9V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 Q N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 4337 B CYS 4958 1_555 E SG CYS 4340 B CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 F SG CYS 4337 G CYS 4958 1_555 F SG CYS 4340 G CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 G SG CYS 4337 I CYS 4958 1_555 G SG CYS 4340 I CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 H SG CYS 4337 E CYS 4958 1_555 H SG CYS 4340 E CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 E OE2 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 E OE2 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 E SG CYS 4337 B CYS 4958 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc4 E NE2 HIS 4357 B HIS 4978 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc5 E NE2 HIS 4362 B HIS 4983 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc6 E O THR 4380 B THR 5001 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc7 F OE2 GLU 3532 G GLU 3893 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc8 F OE2 GLU 3606 G GLU 3967 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc9 F SG CYS 4337 G CYS 4958 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc10 F NE2 HIS 4357 G HIS 4978 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc11 F NE2 HIS 4362 G HIS 4983 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc12 F O THR 4380 G THR 5001 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc13 G OE2 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc14 G OE2 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc15 G SG CYS 4337 I CYS 4958 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc16 G NE2 HIS 4357 I HIS 4978 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc17 G NE2 HIS 4362 I HIS 4983 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc18 G O THR 4380 I THR 5001 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc19 H OE2 GLU 3532 E GLU 3893 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc20 H OE2 GLU 3606 E GLU 3967 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc21 H SG CYS 4337 E CYS 4958 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc22 H NE2 HIS 4357 E HIS 4978 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc23 H NE2 HIS 4362 E HIS 4983 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc24 H O THR 4380 E THR 5001 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5T9V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP B 1 5101 5300 ATP ATP . 
J 4 CFF B 1 5102 5400 CFF CFF . 
K 5 ZN B 1 5103 6000 ZN ZN . 
L 6 CA B 1 5104 7000 CA CA . 
M 3 ATP G 1 5101 5300 ATP ATP . 
N 4 CFF G 1 5102 5400 CFF CFF . 
O 5 ZN G 1 5103 6000 ZN ZN . 
P 6 CA G 1 5104 7000 CA CA . 
Q 3 ATP I 1 5101 5300 ATP ATP . 
R 4 CFF I 1 5102 5400 CFF CFF . 
S 5 ZN I 1 5103 6000 ZN ZN . 
T 6 CA I 1 5104 7000 CA CA . 
U 3 ATP E 1 5101 5300 ATP ATP . 
V 4 CFF E 1 5102 5400 CFF CFF . 
W 5 ZN E 1 5103 6000 ZN ZN . 
X 6 CA E 1 5104 7000 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . I 3 222.104 259.56 214.767 1 156.33 ? PG ATP 5101 B 1 
HETATM 2 O O1G ATP . . . I 3 221.78 260.064 213.383 1 156.33 ? O1G ATP 5101 B 1 
HETATM 3 O O2G ATP . . . I 3 221.892 258.079 214.963 1 156.33 ? O2G ATP 5101 B 1 
HETATM 4 O O3G ATP . . . I 3 221.556 260.424 215.878 1 156.33 ? O3G ATP 5101 B 1 
HETATM 5 P PB ATP . . . I 3 224.493 259.426 216.224 1 156.33 ? PB ATP 5101 B 1 
HETATM 6 O O1B ATP . . . I 3 224.373 257.951 216.517 1 156.33 ? O1B ATP 5101 B 1 
HETATM 7 O O2B ATP . . . I 3 224.089 260.432 217.275 1 156.33 ? O2B ATP 5101 B 1 
HETATM 8 O O3B ATP . . . I 3 223.7 259.739 214.862 1 156.33 ? O3B ATP 5101 B 1 
HETATM 9 P PA ATP . . . I 3 226.555 261.223 215.715 1 156.33 ? PA ATP 5101 B 1 
HETATM 10 O O1A ATP . . . I 3 227.914 261.171 215.067 1 156.33 ? O1A ATP 5101 B 1 
HETATM 11 O O2A ATP . . . I 3 225.468 262.093 215.136 1 156.33 ? O2A ATP 5101 B 1 
HETATM 12 O O3A ATP . . . I 3 226.009 259.716 215.781 1 156.33 ? O3A ATP 5101 B 1 
HETATM 13 O O5' ATP . . . I 3 226.725 261.552 217.273 1 156.33 ? O5' ATP 5101 B 1 
HETATM 14 C C5' ATP . . . I 3 228.019 261.479 217.844 1 156.33 ? C5' ATP 5101 B 1 
HETATM 15 C C4' ATP . . . I 3 228.079 260.155 218.585 1 156.33 ? C4' ATP 5101 B 1 
HETATM 16 O O4' ATP . . . I 3 229.283 260.097 219.34 1 156.33 ? O4' ATP 5101 B 1 
HETATM 17 C C3' ATP . . . I 3 226.919 260.006 219.55 1 156.33 ? C3' ATP 5101 B 1 
HETATM 18 O O3' ATP . . . I 3 226.08 258.932 219.122 1 156.33 ? O3' ATP 5101 B 1 
HETATM 19 C C2' ATP . . . I 3 227.541 259.688 220.893 1 156.33 ? C2' ATP 5101 B 1 
HETATM 20 O O2' ATP . . . I 3 227.236 258.338 221.244 1 156.33 ? O2' ATP 5101 B 1 
HETATM 21 C C1' ATP . . . I 3 229.039 259.827 220.712 1 156.33 ? C1' ATP 5101 B 1 
HETATM 22 N N9 ATP . . . I 3 229.533 260.993 221.475 1 156.33 ? N9 ATP 5101 B 1 
HETATM 23 C C8 ATP . . . I 3 229.111 262.26 221.331 1 156.33 ? C8 ATP 5101 B 1 
HETATM 24 N N7 ATP . . . I 3 229.766 263.092 222.179 1 156.33 ? N7 ATP 5101 B 1 
HETATM 25 C C5 ATP . . . I 3 230.632 262.349 222.888 1 156.33 ? C5 ATP 5101 B 1 
HETATM 26 C C6 ATP . . . I 3 231.635 262.583 223.953 1 156.33 ? C6 ATP 5101 B 1 
HETATM 27 N N6 ATP . . . I 3 231.878 263.804 224.468 1 156.33 ? N6 ATP 5101 B 1 
HETATM 28 N N1 ATP . . . I 3 232.322 261.526 224.411 1 156.33 ? N1 ATP 5101 B 1 
HETATM 29 C C2 ATP . . . I 3 232.119 260.298 223.926 1 156.33 ? C2 ATP 5101 B 1 
HETATM 30 N N3 ATP . . . I 3 231.232 260.004 222.966 1 156.33 ? N3 ATP 5101 B 1 
HETATM 31 C C4 ATP . . . I 3 230.47 260.969 222.417 1 156.33 ? C4 ATP 5101 B 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    153 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           31 
#