data_5TA3 # _model_server_result.job_id UXM5SyAuvJLISXsYfK3F9w _model_server_result.datetime_utc '2024-11-26 17:01:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ta3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":5101}' # _entry.id 5TA3 # _exptl.entry_id 5TA3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TA3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 Q N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 4337 B CYS 4958 1_555 E SG CYS 4340 B CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 F SG CYS 4337 G CYS 4958 1_555 F SG CYS 4340 G CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 G SG CYS 4337 I CYS 4958 1_555 G SG CYS 4340 I CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 H SG CYS 4337 E CYS 4958 1_555 H SG CYS 4340 E CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc1 E OE2 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 E OE2 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 E SG CYS 4337 B CYS 4958 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 E SG CYS 4340 B CYS 4961 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 E NE2 HIS 4357 B HIS 4978 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 E ND1 HIS 4362 B HIS 4983 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 E O THR 4380 B THR 5001 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc8 F OE2 GLU 3532 G GLU 3893 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 F OE2 GLU 3606 G GLU 3967 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc10 F SG CYS 4337 G CYS 4958 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 F SG CYS 4340 G CYS 4961 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc12 F NE2 HIS 4357 G HIS 4978 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 F ND1 HIS 4362 G HIS 4983 1_555 O ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc14 F O THR 4380 G THR 5001 1_555 P CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc15 G OE2 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc16 G OE2 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc17 G SG CYS 4337 I CYS 4958 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc18 G SG CYS 4340 I CYS 4961 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc19 G NE2 HIS 4357 I HIS 4978 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc20 G ND1 HIS 4362 I HIS 4983 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc21 G O THR 4380 I THR 5001 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc22 H OE2 GLU 3532 E GLU 3893 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc23 H OE2 GLU 3606 E GLU 3967 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc24 H SG CYS 4337 E CYS 4958 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc25 H SG CYS 4340 E CYS 4961 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc26 H NE2 HIS 4357 E HIS 4978 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc27 H ND1 HIS 4362 E HIS 4983 1_555 W ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc28 H O THR 4380 E THR 5001 1_555 X CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5TA3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP B 1 5101 5300 ATP ATP . J 4 CFF B 1 5102 5400 CFF CFF . K 5 ZN B 1 5103 6000 ZN ZN . L 6 CA B 1 5104 7000 CA CA . M 3 ATP G 1 5101 5300 ATP ATP . N 4 CFF G 1 5102 5400 CFF CFF . O 5 ZN G 1 5103 6000 ZN ZN . P 6 CA G 1 5104 7000 CA CA . Q 3 ATP I 1 5101 5300 ATP ATP . R 4 CFF I 1 5102 5400 CFF CFF . S 5 ZN I 1 5103 6000 ZN ZN . T 6 CA I 1 5104 7000 CA CA . U 3 ATP E 1 5101 5300 ATP ATP . V 4 CFF E 1 5102 5400 CFF CFF . W 5 ZN E 1 5103 6000 ZN ZN . X 6 CA E 1 5104 7000 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 3 279.665 242.147 214.744 1 143.76 ? PG ATP 5101 G 1 HETATM 2 O O1G ATP . . . M 3 280.105 241.379 213.521 1 143.76 ? O1G ATP 5101 G 1 HETATM 3 O O2G ATP . . . M 3 279.784 243.647 214.624 1 143.76 ? O2G ATP 5101 G 1 HETATM 4 O O3G ATP . . . M 3 280.169 241.58 216.048 1 143.76 ? O3G ATP 5101 G 1 HETATM 5 P PB ATP . . . M 3 277.247 242.24 216.126 1 143.76 ? PB ATP 5101 G 1 HETATM 6 O O1B ATP . . . M 3 277.476 243.692 216.462 1 143.76 ? O1B ATP 5101 G 1 HETATM 7 O O2B ATP . . . M 3 277.504 241.17 217.16 1 143.76 ? O2B ATP 5101 G 1 HETATM 8 O O3B ATP . . . M 3 278.08 241.896 214.798 1 143.76 ? O3B ATP 5101 G 1 HETATM 9 P PA ATP . . . M 3 275.1 240.624 215.466 1 143.76 ? PA ATP 5101 G 1 HETATM 10 O O1A ATP . . . M 3 273.826 240.775 214.675 1 143.76 ? O1A ATP 5101 G 1 HETATM 11 O O2A ATP . . . M 3 276.174 239.662 215.024 1 143.76 ? O2A ATP 5101 G 1 HETATM 12 O O3A ATP . . . M 3 275.743 242.087 215.593 1 143.76 ? O3A ATP 5101 G 1 HETATM 13 O O5' ATP . . . M 3 274.741 240.335 216.999 1 143.76 ? O5' ATP 5101 G 1 HETATM 14 C C5' ATP . . . M 3 273.383 240.283 217.401 1 143.76 ? C5' ATP 5101 G 1 HETATM 15 C C4' ATP . . . M 3 273.165 241.493 218.291 1 143.76 ? C4' ATP 5101 G 1 HETATM 16 O O4' ATP . . . M 3 272.024 241.294 219.119 1 143.76 ? O4' ATP 5101 G 1 HETATM 17 C C3' ATP . . . M 3 274.359 241.71 219.201 1 143.76 ? C3' ATP 5101 G 1 HETATM 18 O O3' ATP . . . M 3 275.11 242.837 218.746 1 143.76 ? O3' ATP 5101 G 1 HETATM 19 C C2' ATP . . . M 3 273.783 241.966 220.575 1 143.76 ? C2' ATP 5101 G 1 HETATM 20 O O2' ATP . . . M 3 273.968 243.335 220.93 1 143.76 ? O2' ATP 5101 G 1 HETATM 21 C C1' ATP . . . M 3 272.302 241.67 220.463 1 143.76 ? C1' ATP 5101 G 1 HETATM 22 N N9 ATP . . . M 3 272.008 240.509 221.321 1 143.76 ? N9 ATP 5101 G 1 HETATM 23 C C8 ATP . . . M 3 272.323 239.235 221.046 1 143.76 ? C8 ATP 5101 G 1 HETATM 24 N N7 ATP . . . M 3 271.915 238.409 222.04 1 143.76 ? N7 ATP 5101 G 1 HETATM 25 C C5 ATP . . . M 3 271.329 239.173 222.971 1 143.76 ? C5 ATP 5101 G 1 HETATM 26 C C6 ATP . . . M 3 270.68 238.956 224.275 1 143.76 ? C6 ATP 5101 G 1 HETATM 27 N N6 ATP . . . M 3 270.556 237.728 224.821 1 143.76 ? N6 ATP 5101 G 1 HETATM 28 N N1 ATP . . . M 3 270.209 240.036 224.92 1 143.76 ? N1 ATP 5101 G 1 HETATM 29 C C2 ATP . . . M 3 270.299 241.272 224.415 1 143.76 ? C2 ATP 5101 G 1 HETATM 30 N N3 ATP . . . M 3 270.875 241.547 223.239 1 143.76 ? N3 ATP 5101 G 1 HETATM 31 C C4 ATP . . . M 3 271.397 240.556 222.492 1 143.76 ? C4 ATP 5101 G 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 196 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #