data_5TA6 # _model_server_result.job_id 4JypB4sj-PrqVEDk3Qu9YQ _model_server_result.datetime_utc '2024-11-05 04:47:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ta6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 5TA6 # _exptl.entry_id 5TA6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 555.674 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[(6R)-7-cyano-5-cyclopentyl-6-ethyl-5,6-dihydroimidazo[1,5-f]pteridin-3-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TA6 _cell.length_a 66.303 _cell.length_b 66.303 _cell.length_c 153.115 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TA6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 106 A HIS 93 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A SG CYS 225 A CYS 212 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A SG CYS 268 A CYS 255 1_555 C ZN ZN . A ZN 1001 5_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 C ZN ZN . A ZN 1001 1_555 D O HOH . A HOH 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? # _chem_comp.formula 'C30 H37 N9 O2' _chem_comp.formula_weight 555.674 _chem_comp.id 79D _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[(6R)-7-cyano-5-cyclopentyl-6-ethyl-5,6-dihydroimidazo[1,5-f]pteridin-3-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O21 79D sing 1 n n O21 C20 79D sing 2 n n O24 C23 79D doub 3 n n C19 C20 79D doub 4 n y C19 C18 79D sing 5 n y C20 C15 79D sing 6 n y C23 C18 79D sing 7 n n C23 N25 79D sing 8 n n C18 C17 79D doub 9 n y C15 N14 79D sing 10 n n C15 C16 79D doub 11 n y N14 C13 79D sing 12 n n N33 C13 79D doub 13 n y N33 C34 79D sing 14 n y C17 C16 79D sing 15 n y C26 N25 79D sing 16 n n C26 C27 79D sing 17 n n C26 C32 79D sing 18 n n C13 N12 79D sing 19 n y C27 C28 79D sing 20 n n C28 N29 79D sing 21 n n C34 C35 79D doub 22 n y C32 C31 79D sing 23 n n C31 N29 79D sing 24 n n N12 C11 79D doub 25 n y C30 N29 79D sing 26 n n C35 C11 79D sing 27 n y C35 N36 79D sing 28 n n C11 N5 79D sing 29 n n C37 N36 79D sing 30 n y C37 N38 79D doub 31 n y N36 C42 79D sing 32 n y N5 C6 79D sing 33 n n N5 C3 79D sing 34 n n C6 C10 79D sing 35 n n C6 C7 79D sing 36 n n N38 C39 79D sing 37 n y C42 C3 79D sing 38 n n C42 C39 79D doub 39 n y C10 C9 79D sing 40 n n C7 C8 79D sing 41 n n C8 C9 79D sing 42 n n C3 C2 79D sing 43 n n C39 C40 79D sing 44 n n C1 C2 79D sing 45 n n C40 N41 79D trip 46 n n C6 H1 79D sing 47 n n C7 H2 79D sing 48 n n C7 H3 79D sing 49 n n C8 H4 79D sing 50 n n C8 H5 79D sing 51 n n C10 H6 79D sing 52 n n C10 H7 79D sing 53 n n C17 H8 79D sing 54 n n C22 H9 79D sing 55 n n C22 H10 79D sing 56 n n C22 H11 79D sing 57 n n C26 H12 79D sing 58 n n C28 H13 79D sing 59 n n C28 H14 79D sing 60 n n C1 H15 79D sing 61 n n C1 H16 79D sing 62 n n C1 H17 79D sing 63 n n C2 H18 79D sing 64 n n C2 H19 79D sing 65 n n C3 H20 79D sing 66 n n C9 H21 79D sing 67 n n C9 H22 79D sing 68 n n N14 H23 79D sing 69 n n C16 H24 79D sing 70 n n C19 H25 79D sing 71 n n N25 H26 79D sing 72 n n C27 H27 79D sing 73 n n C27 H28 79D sing 74 n n C30 H30 79D sing 75 n n C30 H31 79D sing 76 n n C30 H32 79D sing 77 n n C31 H33 79D sing 78 n n C31 H34 79D sing 79 n n C32 H35 79D sing 80 n n C32 H36 79D sing 81 n n C34 H37 79D sing 82 n n C37 H38 79D sing 83 n n # _atom_sites.entry_id 5TA6 _atom_sites.fract_transf_matrix[1][1] 0.015082 _atom_sites.fract_transf_matrix[1][2] 0.008708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 79D A 1 1000 1000 79D LIG . C 3 ZN A 1 1001 1001 ZN ZN . D 4 HOH A 1 1101 1068 HOH HOH . D 4 HOH A 2 1102 1089 HOH HOH . D 4 HOH A 3 1103 1091 HOH HOH . D 4 HOH A 4 1104 1087 HOH HOH . D 4 HOH A 5 1105 1081 HOH HOH . D 4 HOH A 6 1106 1062 HOH HOH . D 4 HOH A 7 1107 1076 HOH HOH . D 4 HOH A 8 1108 1109 HOH HOH . D 4 HOH A 9 1109 1078 HOH HOH . D 4 HOH A 10 1110 1046 HOH HOH . D 4 HOH A 11 1111 1110 HOH HOH . D 4 HOH A 12 1112 1005 HOH HOH . D 4 HOH A 13 1113 1066 HOH HOH . D 4 HOH A 14 1114 1024 HOH HOH . D 4 HOH A 15 1115 1059 HOH HOH . D 4 HOH A 16 1116 1038 HOH HOH . D 4 HOH A 17 1117 1016 HOH HOH . D 4 HOH A 18 1118 1093 HOH HOH . D 4 HOH A 19 1119 1090 HOH HOH . D 4 HOH A 20 1120 1106 HOH HOH . D 4 HOH A 21 1121 1057 HOH HOH . D 4 HOH A 22 1122 1022 HOH HOH . D 4 HOH A 23 1123 1069 HOH HOH . D 4 HOH A 24 1124 1047 HOH HOH . D 4 HOH A 25 1125 1061 HOH HOH . D 4 HOH A 26 1126 1107 HOH HOH . D 4 HOH A 27 1127 1043 HOH HOH . D 4 HOH A 28 1128 1099 HOH HOH . D 4 HOH A 29 1129 1044 HOH HOH . D 4 HOH A 30 1130 1002 HOH HOH . D 4 HOH A 31 1131 1092 HOH HOH . D 4 HOH A 32 1132 1105 HOH HOH . D 4 HOH A 33 1133 1065 HOH HOH . D 4 HOH A 34 1134 1098 HOH HOH . D 4 HOH A 35 1135 1053 HOH HOH . D 4 HOH A 36 1136 1096 HOH HOH . D 4 HOH A 37 1137 1037 HOH HOH . D 4 HOH A 38 1138 1042 HOH HOH . D 4 HOH A 39 1139 1004 HOH HOH . D 4 HOH A 40 1140 1097 HOH HOH . D 4 HOH A 41 1141 1008 HOH HOH . D 4 HOH A 42 1142 1086 HOH HOH . D 4 HOH A 43 1143 1048 HOH HOH . D 4 HOH A 44 1144 1003 HOH HOH . D 4 HOH A 45 1145 1103 HOH HOH . D 4 HOH A 46 1146 1079 HOH HOH . D 4 HOH A 47 1147 1025 HOH HOH . D 4 HOH A 48 1148 1056 HOH HOH . D 4 HOH A 49 1149 1070 HOH HOH . D 4 HOH A 50 1150 1012 HOH HOH . D 4 HOH A 51 1151 1035 HOH HOH . D 4 HOH A 52 1152 1041 HOH HOH . D 4 HOH A 53 1153 1071 HOH HOH . D 4 HOH A 54 1154 1030 HOH HOH . D 4 HOH A 55 1155 1036 HOH HOH . D 4 HOH A 56 1156 1023 HOH HOH . D 4 HOH A 57 1157 1083 HOH HOH . D 4 HOH A 58 1158 1009 HOH HOH . D 4 HOH A 59 1159 1007 HOH HOH . D 4 HOH A 60 1160 1060 HOH HOH . D 4 HOH A 61 1161 1034 HOH HOH . D 4 HOH A 62 1162 1095 HOH HOH . D 4 HOH A 63 1163 1108 HOH HOH . D 4 HOH A 64 1164 1067 HOH HOH . D 4 HOH A 65 1165 1052 HOH HOH . D 4 HOH A 66 1166 1020 HOH HOH . D 4 HOH A 67 1167 1006 HOH HOH . D 4 HOH A 68 1168 1032 HOH HOH . D 4 HOH A 69 1169 1014 HOH HOH . D 4 HOH A 70 1170 1018 HOH HOH . D 4 HOH A 71 1171 1010 HOH HOH . D 4 HOH A 72 1172 1039 HOH HOH . D 4 HOH A 73 1173 1021 HOH HOH . D 4 HOH A 74 1174 1094 HOH HOH . D 4 HOH A 75 1175 1049 HOH HOH . D 4 HOH A 76 1176 1073 HOH HOH . D 4 HOH A 77 1177 1088 HOH HOH . D 4 HOH A 78 1178 1104 HOH HOH . D 4 HOH A 79 1179 1045 HOH HOH . D 4 HOH A 80 1180 1055 HOH HOH . D 4 HOH A 81 1181 1101 HOH HOH . D 4 HOH A 82 1182 1064 HOH HOH . D 4 HOH A 83 1183 1029 HOH HOH . D 4 HOH A 84 1184 1019 HOH HOH . D 4 HOH A 85 1185 1082 HOH HOH . D 4 HOH A 86 1186 1028 HOH HOH . D 4 HOH A 87 1187 1074 HOH HOH . D 4 HOH A 88 1188 1054 HOH HOH . D 4 HOH A 89 1189 1011 HOH HOH . D 4 HOH A 90 1190 1058 HOH HOH . D 4 HOH A 91 1191 1075 HOH HOH . D 4 HOH A 92 1192 1051 HOH HOH . D 4 HOH A 93 1193 1077 HOH HOH . D 4 HOH A 94 1194 1111 HOH HOH . D 4 HOH A 95 1195 1027 HOH HOH . D 4 HOH A 96 1196 1050 HOH HOH . D 4 HOH A 97 1197 1015 HOH HOH . D 4 HOH A 98 1198 1080 HOH HOH . D 4 HOH A 99 1199 1100 HOH HOH . D 4 HOH A 100 1200 1040 HOH HOH . D 4 HOH A 101 1201 1084 HOH HOH . D 4 HOH A 102 1202 1063 HOH HOH . D 4 HOH A 103 1203 1072 HOH HOH . D 4 HOH A 104 1204 1102 HOH HOH . D 4 HOH A 105 1205 1013 HOH HOH . D 4 HOH A 106 1206 1085 HOH HOH . D 4 HOH A 107 1207 1033 HOH HOH . D 4 HOH A 108 1208 1017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 79D . . . B 2 10.761 46.505 10.978 1 36.79 ? C6 79D 1000 A 1 HETATM 2 C C7 79D . . . B 2 9.913 47.491 11.84 1 35.43 ? C7 79D 1000 A 1 HETATM 3 C C8 79D . . . B 2 10.917 48.658 12.011 1 35.72 ? C8 79D 1000 A 1 HETATM 4 C C10 79D . . . B 2 12.179 46.582 11.599 1 37.02 ? C10 79D 1000 A 1 HETATM 5 N N12 79D . . . B 2 11.426 44.838 8.895 1 33.71 ? N12 79D 1000 A 1 HETATM 6 C C13 79D . . . B 2 11.709 44.14 7.807 1 34.84 ? C13 79D 1000 A 1 HETATM 7 C C15 79D . . . B 2 13.415 45.748 6.854 1 38.96 ? C15 79D 1000 A 1 HETATM 8 C C17 79D . . . B 2 13.996 47.953 7.583 1 41.55 ? C17 79D 1000 A 1 HETATM 9 C C20 79D . . . B 2 14.48 45.779 5.939 1 42.78 ? C20 79D 1000 A 1 HETATM 10 C C22 79D . . . B 2 15.855 44.442 4.429 1 46.44 ? C22 79D 1000 A 1 HETATM 11 C C26 79D . . . B 2 17.013 51.212 7.666 1 57.49 ? C26 79D 1000 A 1 HETATM 12 C C28 79D . . . B 2 16.939 53.689 8.199 1 65.86 ? C28 79D 1000 A 1 HETATM 13 C C1 79D . . . B 2 11.468 42.905 12.757 1 35.14 ? C1 79D 1000 A 1 HETATM 14 C C2 79D . . . B 2 10.495 44.007 13.194 1 32.74 ? C2 79D 1000 A 1 HETATM 15 C C3 79D . . . B 2 9.546 44.489 12.071 1 34.28 ? C3 79D 1000 A 1 HETATM 16 N N5 79D . . . B 2 10.243 45.114 10.918 1 33.02 ? N5 79D 1000 A 1 HETATM 17 C C9 79D . . . B 2 12.258 47.956 12.297 1 35.38 ? C9 79D 1000 A 1 HETATM 18 C C11 79D . . . B 2 10.537 44.393 9.779 1 33.56 ? C11 79D 1000 A 1 HETATM 19 N N14 79D . . . B 2 12.64 44.573 6.863 1 38.77 ? N14 79D 1000 A 1 HETATM 20 C C16 79D . . . B 2 13.175 46.844 7.676 1 35.2 ? C16 79D 1000 A 1 HETATM 21 C C18 79D . . . B 2 15.079 47.999 6.68 1 43.6 ? C18 79D 1000 A 1 HETATM 22 C C19 79D . . . B 2 15.31 46.895 5.84 1 41.04 ? C19 79D 1000 A 1 HETATM 23 O O21 79D . . . B 2 14.646 44.664 5.165 1 45.77 ? O21 79D 1000 A 1 HETATM 24 C C23 79D . . . B 2 15.948 49.204 6.596 1 43.86 ? C23 79D 1000 A 1 HETATM 25 O O24 79D . . . B 2 16.444 49.477 5.527 1 50.26 ? O24 79D 1000 A 1 HETATM 26 N N25 79D . . . B 2 16.185 49.992 7.677 1 52.86 ? N25 79D 1000 A 1 HETATM 27 C C27 79D . . . B 2 16.152 52.371 8.179 1 60.54 ? C27 79D 1000 A 1 HETATM 28 N N29 79D . . . B 2 18.137 53.56 9.046 1 68.93 ? N29 79D 1000 A 1 HETATM 29 C C30 79D . . . B 2 18.895 54.821 9.008 1 67.23 ? C30 79D 1000 A 1 HETATM 30 C C31 79D . . . B 2 18.998 52.419 8.669 1 65.67 ? C31 79D 1000 A 1 HETATM 31 C C32 79D . . . B 2 18.227 51.082 8.595 1 66.04 ? C32 79D 1000 A 1 HETATM 32 N N33 79D . . . B 2 11.125 42.977 7.556 1 34.66 ? N33 79D 1000 A 1 HETATM 33 C C34 79D . . . B 2 10.23 42.458 8.378 1 34.27 ? C34 79D 1000 A 1 HETATM 34 C C35 79D . . . B 2 9.925 43.152 9.52 1 35.66 ? C35 79D 1000 A 1 HETATM 35 N N36 79D . . . B 2 8.947 42.689 10.402 1 36.07 ? N36 79D 1000 A 1 HETATM 36 C C37 79D . . . B 2 8.027 41.707 10.271 1 35.22 ? C37 79D 1000 A 1 HETATM 37 N N38 79D . . . B 2 7.283 41.672 11.34 1 33.43 ? N38 79D 1000 A 1 HETATM 38 C C39 79D . . . B 2 7.706 42.672 12.17 1 34.45 ? C39 79D 1000 A 1 HETATM 39 C C40 79D . . . B 2 7.174 43.001 13.445 1 31.89 ? C40 79D 1000 A 1 HETATM 40 N N41 79D . . . B 2 6.734 43.242 14.451 1 32.49 ? N41 79D 1000 A 1 HETATM 41 C C42 79D . . . B 2 8.723 43.324 11.594 1 32.39 ? C42 79D 1000 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #