data_5TAB # _model_server_result.job_id 0b73RfwTzR0-0W7jki7mZQ _model_server_result.datetime_utc '2025-03-24 06:51:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 5TAB # _exptl.entry_id 5TAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TAB _cell.length_a 46.739 _cell.length_b 46.739 _cell.length_c 50.928 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 10 A CYS 10 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A SG CYS 12 A CYS 12 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A SG CYS 24 A CYS 24 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 A SG CYS 27 A CYS 27 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A ND1 HIS 32 A HIS 32 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 A SG CYS 35 A CYS 35 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A SG CYS 49 A CYS 49 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A SG CYS 52 A CYS 52 1_555 B ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 117 n n C1 C2 GOL sing 118 n n C1 H11 GOL sing 119 n n C1 H12 GOL sing 120 n n O1 HO1 GOL sing 121 n n C2 O2 GOL sing 122 n n C2 C3 GOL sing 123 n n C2 H2 GOL sing 124 n n O2 HO2 GOL sing 125 n n C3 O3 GOL sing 126 n n C3 H31 GOL sing 127 n n C3 H32 GOL sing 128 n n O3 HO3 GOL sing 129 n n # _atom_sites.entry_id 5TAB _atom_sites.fract_transf_matrix[1][1] 0.021395 _atom_sites.fract_transf_matrix[1][2] 0.012353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 2 ZN A 1 102 2 ZN ZN . D 3 GOL A 1 103 1 GOL GOL . E 4 HOH A 1 201 9 HOH HOH . E 4 HOH A 2 202 58 HOH HOH . E 4 HOH A 3 203 52 HOH HOH . E 4 HOH A 4 204 68 HOH HOH . E 4 HOH A 5 205 55 HOH HOH . E 4 HOH A 6 206 36 HOH HOH . E 4 HOH A 7 207 54 HOH HOH . E 4 HOH A 8 208 2 HOH HOH . E 4 HOH A 9 209 65 HOH HOH . E 4 HOH A 10 210 24 HOH HOH . E 4 HOH A 11 211 1 HOH HOH . E 4 HOH A 12 212 46 HOH HOH . E 4 HOH A 13 213 71 HOH HOH . E 4 HOH A 14 214 7 HOH HOH . E 4 HOH A 15 215 31 HOH HOH . E 4 HOH A 16 216 40 HOH HOH . E 4 HOH A 17 217 29 HOH HOH . E 4 HOH A 18 218 30 HOH HOH . E 4 HOH A 19 219 43 HOH HOH . E 4 HOH A 20 220 21 HOH HOH . E 4 HOH A 21 221 32 HOH HOH . E 4 HOH A 22 222 23 HOH HOH . E 4 HOH A 23 223 63 HOH HOH . E 4 HOH A 24 224 3 HOH HOH . E 4 HOH A 25 225 67 HOH HOH . E 4 HOH A 26 226 61 HOH HOH . E 4 HOH A 27 227 18 HOH HOH . E 4 HOH A 28 228 6 HOH HOH . E 4 HOH A 29 229 11 HOH HOH . E 4 HOH A 30 230 41 HOH HOH . E 4 HOH A 31 231 28 HOH HOH . E 4 HOH A 32 232 56 HOH HOH . E 4 HOH A 33 233 5 HOH HOH . E 4 HOH A 34 234 25 HOH HOH . E 4 HOH A 35 235 27 HOH HOH . E 4 HOH A 36 236 8 HOH HOH . E 4 HOH A 37 237 16 HOH HOH . E 4 HOH A 38 238 20 HOH HOH . E 4 HOH A 39 239 35 HOH HOH . E 4 HOH A 40 240 69 HOH HOH . E 4 HOH A 41 241 4 HOH HOH . E 4 HOH A 42 242 48 HOH HOH . E 4 HOH A 43 243 38 HOH HOH . E 4 HOH A 44 244 44 HOH HOH . E 4 HOH A 45 245 33 HOH HOH . E 4 HOH A 46 246 66 HOH HOH . E 4 HOH A 47 247 10 HOH HOH . E 4 HOH A 48 248 60 HOH HOH . E 4 HOH A 49 249 34 HOH HOH . E 4 HOH A 50 250 14 HOH HOH . E 4 HOH A 51 251 26 HOH HOH . E 4 HOH A 52 252 37 HOH HOH . E 4 HOH A 53 253 39 HOH HOH . E 4 HOH A 54 254 70 HOH HOH . E 4 HOH A 55 255 50 HOH HOH . E 4 HOH A 56 256 47 HOH HOH . E 4 HOH A 57 257 15 HOH HOH . E 4 HOH A 58 258 12 HOH HOH . E 4 HOH A 59 259 51 HOH HOH . E 4 HOH A 60 260 22 HOH HOH . E 4 HOH A 61 261 42 HOH HOH . E 4 HOH A 62 262 57 HOH HOH . E 4 HOH A 63 263 17 HOH HOH . E 4 HOH A 64 264 62 HOH HOH . E 4 HOH A 65 265 64 HOH HOH . E 4 HOH A 66 266 49 HOH HOH . E 4 HOH A 67 267 45 HOH HOH . E 4 HOH A 68 268 13 HOH HOH . E 4 HOH A 69 269 19 HOH HOH . E 4 HOH A 70 270 53 HOH HOH . E 4 HOH A 71 271 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . D 3 30.253 18.982 20.227 0.36 40.9 ? C1 GOL 103 A 1 HETATM 2 C C1 GOL . B . D 3 29.759 19.07 20.131 0.64 36.25 ? C1 GOL 103 A 1 HETATM 3 O O1 GOL . A . D 3 29.616 19.311 19.012 0.36 39.88 ? O1 GOL 103 A 1 HETATM 4 O O1 GOL . B . D 3 30.702 18.06 20.385 0.64 35.55 ? O1 GOL 103 A 1 HETATM 5 C C2 GOL . A . D 3 29.725 19.869 21.35 0.36 42.08 ? C2 GOL 103 A 1 HETATM 6 C C2 GOL . B . D 3 29.638 19.987 21.349 0.64 38.29 ? C2 GOL 103 A 1 HETATM 7 O O2 GOL . A . D 3 30.64 19.89 22.425 0.36 42.87 ? O2 GOL 103 A 1 HETATM 8 O O2 GOL . B . D 3 30.863 20.037 22.048 0.64 39.8 ? O2 GOL 103 A 1 HETATM 9 C C3 GOL . A . D 3 29.496 21.283 20.831 0.36 42.24 ? C3 GOL 103 A 1 HETATM 10 C C3 GOL . B . D 3 29.231 21.391 20.923 0.64 38.34 ? C3 GOL 103 A 1 HETATM 11 O O3 GOL . A . D 3 29.564 22.2 21.901 0.36 42.55 ? O3 GOL 103 A 1 HETATM 12 O O3 GOL . B . D 3 29.64 22.326 21.904 0.64 38.74 ? O3 GOL 103 A 1 HETATM 13 H H11 GOL . A . D 3 30.066 17.936 20.468 0.36 49.07 ? H11 GOL 103 A 1 HETATM 14 H H11 GOL . B . D 3 30.069 19.652 19.263 0.64 43.5 ? H11 GOL 103 A 1 HETATM 15 H H12 GOL . A . D 3 31.329 19.119 20.126 0.36 49.07 ? H12 GOL 103 A 1 HETATM 16 H H12 GOL . B . D 3 28.79 18.622 19.911 0.64 43.5 ? H12 GOL 103 A 1 HETATM 17 H HO1 GOL . A . D 3 30.007 18.783 18.285 0.36 47.85 ? HO1 GOL 103 A 1 HETATM 18 H HO1 GOL . B . D 3 30.726 17.438 19.627 0.64 42.67 ? HO1 GOL 103 A 1 HETATM 19 H H2 GOL . A . D 3 28.771 19.466 21.689 0.36 50.49 ? H2 GOL 103 A 1 HETATM 20 H H2 GOL . B . D 3 28.862 19.589 22.002 0.64 45.95 ? H2 GOL 103 A 1 HETATM 21 H HO2 GOL . A . D 3 31.49 20.275 22.124 0.36 51.44 ? HO2 GOL 103 A 1 HETATM 22 H HO2 GOL . B . D 3 31.553 20.424 21.47 0.64 47.75 ? HO2 GOL 103 A 1 HETATM 23 H H31 GOL . A . D 3 30.252 21.529 20.086 0.36 50.69 ? H31 GOL 103 A 1 HETATM 24 H H31 GOL . B . D 3 29.695 21.635 19.967 0.64 46 ? H31 GOL 103 A 1 HETATM 25 H H32 GOL . A . D 3 28.517 21.345 20.355 0.36 50.69 ? H32 GOL 103 A 1 HETATM 26 H H32 GOL . B . D 3 28.149 21.439 20.797 0.64 46 ? H32 GOL 103 A 1 HETATM 27 H HO3 GOL . A . D 3 29.027 21.869 22.65 0.36 51.06 ? HO3 GOL 103 A 1 HETATM 28 H HO3 GOL . B . D 3 29.435 21.973 22.796 0.64 46.49 ? HO3 GOL 103 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #