data_5TAD # _model_server_result.job_id ixbOgo7nIzbx7igaQQVakw _model_server_result.datetime_utc '2025-02-27 01:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5TAD # _exptl.entry_id 5TAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TAD _cell.length_a 93.779 _cell.length_b 93.779 _cell.length_c 131.076 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C VAL . A VAL 1001 1_555 H N LYS . A LYS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 sing metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc7 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc9 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc10 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc12 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc13 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc14 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc15 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc16 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc17 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc19 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc20 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc21 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc22 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc23 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc24 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc25 B CA CA . A CA 401 1_555 J O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc26 C CA CA . A CA 402 1_555 J O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc27 C CA CA . A CA 402 1_555 J O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc28 D CA CA . A CA 403 1_555 J O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc29 D CA CA . A CA 403 1_555 J O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc30 D CA CA . A CA 403 1_555 J O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc31 E CA CA . A CA 404 1_555 J O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc32 E CA CA . A CA 404 1_555 J O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc33 F ZN ZN . A ZN 405 1_555 I O3 PO4 . A PO4 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TAD _atom_sites.fract_transf_matrix[1][1] 0.010663 _atom_sites.fract_transf_matrix[1][2] 0.006156 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 VAL A 1 1001 1001 VAL VAL . H 5 LYS A 1 1002 1002 LYS LYS . I 6 PO4 A 1 408 1 PO4 PO4 . J 7 HOH A 1 501 52 HOH HOH . J 7 HOH A 2 502 1 HOH HOH . J 7 HOH A 3 503 21 HOH HOH . J 7 HOH A 4 504 39 HOH HOH . J 7 HOH A 5 505 5 HOH HOH . J 7 HOH A 6 506 31 HOH HOH . J 7 HOH A 7 507 38 HOH HOH . J 7 HOH A 8 508 26 HOH HOH . J 7 HOH A 9 509 32 HOH HOH . J 7 HOH A 10 510 6 HOH HOH . J 7 HOH A 11 511 50 HOH HOH . J 7 HOH A 12 512 71 HOH HOH . J 7 HOH A 13 513 70 HOH HOH . J 7 HOH A 14 514 42 HOH HOH . J 7 HOH A 15 515 8 HOH HOH . J 7 HOH A 16 516 39 HOH HOH . J 7 HOH A 17 517 51 HOH HOH . J 7 HOH A 18 518 13 HOH HOH . J 7 HOH A 19 519 87 HOH HOH . J 7 HOH A 20 520 47 HOH HOH . J 7 HOH A 21 521 119 HOH HOH . J 7 HOH A 22 522 14 HOH HOH . J 7 HOH A 23 523 12 HOH HOH . J 7 HOH A 24 524 23 HOH HOH . J 7 HOH A 25 525 120 HOH HOH . J 7 HOH A 26 526 118 HOH HOH . J 7 HOH A 27 527 2 HOH HOH . J 7 HOH A 28 528 8 HOH HOH . J 7 HOH A 29 529 86 HOH HOH . J 7 HOH A 30 530 59 HOH HOH . J 7 HOH A 31 531 16 HOH HOH . J 7 HOH A 32 532 48 HOH HOH . J 7 HOH A 33 533 69 HOH HOH . J 7 HOH A 34 534 36 HOH HOH . J 7 HOH A 35 535 14 HOH HOH . J 7 HOH A 36 536 7 HOH HOH . J 7 HOH A 37 537 18 HOH HOH . J 7 HOH A 38 538 85 HOH HOH . J 7 HOH A 39 539 33 HOH HOH . J 7 HOH A 40 540 52 HOH HOH . J 7 HOH A 41 541 15 HOH HOH . J 7 HOH A 42 542 97 HOH HOH . J 7 HOH A 43 543 29 HOH HOH . J 7 HOH A 44 544 28 HOH HOH . J 7 HOH A 45 545 89 HOH HOH . J 7 HOH A 46 546 65 HOH HOH . J 7 HOH A 47 547 45 HOH HOH . J 7 HOH A 48 548 44 HOH HOH . J 7 HOH A 49 549 109 HOH HOH . J 7 HOH A 50 550 19 HOH HOH . J 7 HOH A 51 551 54 HOH HOH . J 7 HOH A 52 552 25 HOH HOH . J 7 HOH A 53 553 95 HOH HOH . J 7 HOH A 54 554 88 HOH HOH . J 7 HOH A 55 555 49 HOH HOH . J 7 HOH A 56 556 24 HOH HOH . J 7 HOH A 57 557 57 HOH HOH . J 7 HOH A 58 558 68 HOH HOH . J 7 HOH A 59 559 34 HOH HOH . J 7 HOH A 60 560 40 HOH HOH . J 7 HOH A 61 561 10 HOH HOH . J 7 HOH A 62 562 74 HOH HOH . J 7 HOH A 63 563 41 HOH HOH . J 7 HOH A 64 564 79 HOH HOH . J 7 HOH A 65 565 9 HOH HOH . J 7 HOH A 66 566 75 HOH HOH . J 7 HOH A 67 567 111 HOH HOH . J 7 HOH A 68 568 17 HOH HOH . J 7 HOH A 69 569 27 HOH HOH . J 7 HOH A 70 570 82 HOH HOH . J 7 HOH A 71 571 58 HOH HOH . J 7 HOH A 72 572 105 HOH HOH . J 7 HOH A 73 573 90 HOH HOH . J 7 HOH A 74 574 104 HOH HOH . J 7 HOH A 75 575 53 HOH HOH . J 7 HOH A 76 576 20 HOH HOH . J 7 HOH A 77 577 6 HOH HOH . J 7 HOH A 78 578 12 HOH HOH . J 7 HOH A 79 579 46 HOH HOH . J 7 HOH A 80 580 3 HOH HOH . J 7 HOH A 81 581 99 HOH HOH . J 7 HOH A 82 582 102 HOH HOH . J 7 HOH A 83 583 60 HOH HOH . J 7 HOH A 84 584 73 HOH HOH . J 7 HOH A 85 585 4 HOH HOH . J 7 HOH A 86 586 106 HOH HOH . J 7 HOH A 87 587 66 HOH HOH . J 7 HOH A 88 588 92 HOH HOH . J 7 HOH A 89 589 81 HOH HOH . J 7 HOH A 90 590 30 HOH HOH . J 7 HOH A 91 591 112 HOH HOH . J 7 HOH A 92 592 18 HOH HOH . J 7 HOH A 93 593 96 HOH HOH . J 7 HOH A 94 594 77 HOH HOH . J 7 HOH A 95 595 22 HOH HOH . J 7 HOH A 96 596 11 HOH HOH . J 7 HOH A 97 597 43 HOH HOH . J 7 HOH A 98 598 84 HOH HOH . J 7 HOH A 99 599 62 HOH HOH . J 7 HOH A 100 600 103 HOH HOH . J 7 HOH A 101 601 28 HOH HOH . J 7 HOH A 102 602 15 HOH HOH . J 7 HOH A 103 603 49 HOH HOH . J 7 HOH A 104 604 107 HOH HOH . J 7 HOH A 105 605 25 HOH HOH . J 7 HOH A 106 606 37 HOH HOH . J 7 HOH A 107 607 55 HOH HOH . J 7 HOH A 108 608 83 HOH HOH . J 7 HOH A 109 609 20 HOH HOH . J 7 HOH A 110 610 93 HOH HOH . J 7 HOH A 111 611 11 HOH HOH . J 7 HOH A 112 612 22 HOH HOH . J 7 HOH A 113 613 32 HOH HOH . J 7 HOH A 114 614 98 HOH HOH . J 7 HOH A 115 615 56 HOH HOH . J 7 HOH A 116 616 5 HOH HOH . J 7 HOH A 117 617 60 HOH HOH . J 7 HOH A 118 618 76 HOH HOH . J 7 HOH A 119 619 91 HOH HOH . J 7 HOH A 120 620 121 HOH HOH . J 7 HOH A 121 621 16 HOH HOH . J 7 HOH A 122 622 35 HOH HOH . J 7 HOH A 123 623 61 HOH HOH . J 7 HOH A 124 624 64 HOH HOH . J 7 HOH A 125 625 46 HOH HOH . J 7 HOH A 126 626 27 HOH HOH . J 7 HOH A 127 627 2 HOH HOH . J 7 HOH A 128 628 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.982 _atom_site.Cartn_y -36.546 _atom_site.Cartn_z -7.188 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #