data_5TAI # _model_server_result.job_id NMOIKCVhcRawRyFXXDA3PQ _model_server_result.datetime_utc '2025-02-27 00:59:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5TAI # _exptl.entry_id 5TAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TAI _cell.length_a 93.539 _cell.length_b 93.539 _cell.length_c 130.741 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C VAL . A VAL 1001 1_555 H N LYS . A LYS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 sing metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc12 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc15 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc16 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc17 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc19 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc20 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc21 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc22 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc24 B CA CA . A CA 401 1_555 I O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc25 C CA CA . A CA 402 1_555 I O HOH . A HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc26 D CA CA . A CA 403 1_555 I O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc27 D CA CA . A CA 403 1_555 I O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc28 D CA CA . A CA 403 1_555 I O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc29 E CA CA . A CA 404 1_555 I O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc30 E CA CA . A CA 404 1_555 I O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc31 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc32 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TAI _atom_sites.fract_transf_matrix[1][1] 0.010691 _atom_sites.fract_transf_matrix[1][2] 0.006172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 VAL A 1 1001 1001 VAL VAL . H 5 LYS A 1 1002 1002 LYS LYS . I 6 HOH A 1 501 56 HOH HOH . I 6 HOH A 2 502 101 HOH HOH . I 6 HOH A 3 503 49 HOH HOH . I 6 HOH A 4 504 1074 HOH HOH . I 6 HOH A 5 505 21 HOH HOH . I 6 HOH A 6 506 1047 HOH HOH . I 6 HOH A 7 507 1025 HOH HOH . I 6 HOH A 8 508 48 HOH HOH . I 6 HOH A 9 509 31 HOH HOH . I 6 HOH A 10 510 102 HOH HOH . I 6 HOH A 11 511 1045 HOH HOH . I 6 HOH A 12 512 1040 HOH HOH . I 6 HOH A 13 513 1067 HOH HOH . I 6 HOH A 14 514 1011 HOH HOH . I 6 HOH A 15 515 1005 HOH HOH . I 6 HOH A 16 516 1018 HOH HOH . I 6 HOH A 17 517 1054 HOH HOH . I 6 HOH A 18 518 6 HOH HOH . I 6 HOH A 19 519 1017 HOH HOH . I 6 HOH A 20 520 1059 HOH HOH . I 6 HOH A 21 521 1075 HOH HOH . I 6 HOH A 22 522 1028 HOH HOH . I 6 HOH A 23 523 1031 HOH HOH . I 6 HOH A 24 524 7 HOH HOH . I 6 HOH A 25 525 1029 HOH HOH . I 6 HOH A 26 526 70 HOH HOH . I 6 HOH A 27 527 1035 HOH HOH . I 6 HOH A 28 528 1003 HOH HOH . I 6 HOH A 29 529 18 HOH HOH . I 6 HOH A 30 530 10 HOH HOH . I 6 HOH A 31 531 1019 HOH HOH . I 6 HOH A 32 532 1006 HOH HOH . I 6 HOH A 33 533 1022 HOH HOH . I 6 HOH A 34 534 53 HOH HOH . I 6 HOH A 35 535 1020 HOH HOH . I 6 HOH A 36 536 88 HOH HOH . I 6 HOH A 37 537 34 HOH HOH . I 6 HOH A 38 538 1030 HOH HOH . I 6 HOH A 39 539 1010 HOH HOH . I 6 HOH A 40 540 1007 HOH HOH . I 6 HOH A 41 541 14 HOH HOH . I 6 HOH A 42 542 1015 HOH HOH . I 6 HOH A 43 543 1008 HOH HOH . I 6 HOH A 44 544 43 HOH HOH . I 6 HOH A 45 545 1014 HOH HOH . I 6 HOH A 46 546 1073 HOH HOH . I 6 HOH A 47 547 85 HOH HOH . I 6 HOH A 48 548 1027 HOH HOH . I 6 HOH A 49 549 1044 HOH HOH . I 6 HOH A 50 550 1024 HOH HOH . I 6 HOH A 51 551 1055 HOH HOH . I 6 HOH A 52 552 1068 HOH HOH . I 6 HOH A 53 553 1037 HOH HOH . I 6 HOH A 54 554 1048 HOH HOH . I 6 HOH A 55 555 29 HOH HOH . I 6 HOH A 56 556 30 HOH HOH . I 6 HOH A 57 557 1077 HOH HOH . I 6 HOH A 58 558 52 HOH HOH . I 6 HOH A 59 559 1032 HOH HOH . I 6 HOH A 60 560 1016 HOH HOH . I 6 HOH A 61 561 1057 HOH HOH . I 6 HOH A 62 562 11 HOH HOH . I 6 HOH A 63 563 51 HOH HOH . I 6 HOH A 64 564 24 HOH HOH . I 6 HOH A 65 565 1043 HOH HOH . I 6 HOH A 66 566 1069 HOH HOH . I 6 HOH A 67 567 1004 HOH HOH . I 6 HOH A 68 568 1064 HOH HOH . I 6 HOH A 69 569 1038 HOH HOH . I 6 HOH A 70 570 87 HOH HOH . I 6 HOH A 71 571 1061 HOH HOH . I 6 HOH A 72 572 27 HOH HOH . I 6 HOH A 73 573 1049 HOH HOH . I 6 HOH A 74 574 1026 HOH HOH . I 6 HOH A 75 575 1056 HOH HOH . I 6 HOH A 76 576 74 HOH HOH . I 6 HOH A 77 577 20 HOH HOH . I 6 HOH A 78 578 1041 HOH HOH . I 6 HOH A 79 579 67 HOH HOH . I 6 HOH A 80 580 1050 HOH HOH . I 6 HOH A 81 581 89 HOH HOH . I 6 HOH A 82 582 1036 HOH HOH . I 6 HOH A 83 583 86 HOH HOH . I 6 HOH A 84 584 22 HOH HOH . I 6 HOH A 85 585 83 HOH HOH . I 6 HOH A 86 586 50 HOH HOH . I 6 HOH A 87 587 1052 HOH HOH . I 6 HOH A 88 588 61 HOH HOH . I 6 HOH A 89 589 1076 HOH HOH . I 6 HOH A 90 590 41 HOH HOH . I 6 HOH A 91 591 69 HOH HOH . I 6 HOH A 92 592 98 HOH HOH . I 6 HOH A 93 593 44 HOH HOH . I 6 HOH A 94 594 81 HOH HOH . I 6 HOH A 95 595 1058 HOH HOH . I 6 HOH A 96 596 66 HOH HOH . I 6 HOH A 97 597 58 HOH HOH . I 6 HOH A 98 598 28 HOH HOH . I 6 HOH A 99 599 1063 HOH HOH . I 6 HOH A 100 600 37 HOH HOH . I 6 HOH A 101 601 40 HOH HOH . I 6 HOH A 102 602 4 HOH HOH . I 6 HOH A 103 603 1062 HOH HOH . I 6 HOH A 104 604 1012 HOH HOH . I 6 HOH A 105 605 23 HOH HOH . I 6 HOH A 106 606 36 HOH HOH . I 6 HOH A 107 607 59 HOH HOH . I 6 HOH A 108 608 38 HOH HOH . I 6 HOH A 109 609 47 HOH HOH . I 6 HOH A 110 610 1065 HOH HOH . I 6 HOH A 111 611 39 HOH HOH . I 6 HOH A 112 612 45 HOH HOH . I 6 HOH A 113 613 46 HOH HOH . I 6 HOH A 114 614 82 HOH HOH . I 6 HOH A 115 615 3 HOH HOH . I 6 HOH A 116 616 1051 HOH HOH . I 6 HOH A 117 617 55 HOH HOH . I 6 HOH A 118 618 1042 HOH HOH . I 6 HOH A 119 619 19 HOH HOH . I 6 HOH A 120 620 1021 HOH HOH . I 6 HOH A 121 621 99 HOH HOH . I 6 HOH A 122 622 95 HOH HOH . I 6 HOH A 123 623 64 HOH HOH . I 6 HOH A 124 624 15 HOH HOH . I 6 HOH A 125 625 12 HOH HOH . I 6 HOH A 126 626 13 HOH HOH . I 6 HOH A 127 627 91 HOH HOH . I 6 HOH A 128 628 100 HOH HOH . I 6 HOH A 129 629 90 HOH HOH . I 6 HOH A 130 630 35 HOH HOH . I 6 HOH A 131 631 57 HOH HOH . I 6 HOH A 132 632 92 HOH HOH . I 6 HOH A 133 633 1033 HOH HOH . I 6 HOH A 134 634 1066 HOH HOH . I 6 HOH A 135 635 93 HOH HOH . I 6 HOH A 136 636 97 HOH HOH . I 6 HOH A 137 637 106 HOH HOH . I 6 HOH A 138 638 1078 HOH HOH . I 6 HOH A 139 639 63 HOH HOH . I 6 HOH A 140 640 105 HOH HOH . I 6 HOH A 141 641 8 HOH HOH . I 6 HOH A 142 642 103 HOH HOH . I 6 HOH A 143 643 104 HOH HOH . I 6 HOH A 144 644 96 HOH HOH . I 6 HOH A 145 645 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -31.93 _atom_site.Cartn_y -35.084 _atom_site.Cartn_z 15.864 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #