data_5TAP # _model_server_result.job_id fa_RxdteyLvYYjOSsRzZmw _model_server_result.datetime_utc '2024-11-14 06:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":5101}' # _entry.id 5TAP # _exptl.entry_id 5TAP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TAP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N ? 3 O N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E SG CYS 4337 B CYS 4958 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc2 E SG CYS 4340 B CYS 4961 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc3 E NE2 HIS 4357 B HIS 4978 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 E NE2 HIS 4362 B HIS 4983 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 F SG CYS 4337 E CYS 4958 1_555 N ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc6 F SG CYS 4340 E CYS 4961 1_555 N ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc7 F NE2 HIS 4357 E HIS 4978 1_555 N ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 F NE2 HIS 4362 E HIS 4983 1_555 N ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc9 G SG CYS 4337 I CYS 4958 1_555 Q ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc10 G SG CYS 4340 I CYS 4961 1_555 Q ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc11 G NE2 HIS 4357 I HIS 4978 1_555 Q ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc12 G NE2 HIS 4362 I HIS 4983 1_555 Q ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 H SG CYS 4337 G CYS 4958 1_555 T ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc14 H SG CYS 4340 G CYS 4961 1_555 T ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc15 H NE2 HIS 4357 G HIS 4978 1_555 T ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc16 H NE2 HIS 4362 G HIS 4983 1_555 T ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5TAP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP B 1 5101 5300 ATP ATP . J 4 CFF B 1 5102 5400 CFF CFF . K 5 ZN B 1 5103 6000 ZN ZN . L 3 ATP E 1 5101 5300 ATP ATP . M 4 CFF E 1 5102 5400 CFF CFF . N 5 ZN E 1 5103 6000 ZN ZN . O 3 ATP I 1 5101 5300 ATP ATP . P 4 CFF I 1 5102 5400 CFF CFF . Q 5 ZN I 1 5103 6000 ZN ZN . R 3 ATP G 1 5101 5300 ATP ATP . S 4 CFF G 1 5102 5400 CFF CFF . T 5 ZN G 1 5103 6000 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . L 3 258.659 277.895 217.969 1 153.51 ? PG ATP 5101 E 1 HETATM 2 O O1G ATP . . . L 3 259.348 278.404 216.727 1 153.51 ? O1G ATP 5101 E 1 HETATM 3 O O2G ATP . . . L 3 257.383 277.135 217.7 1 153.51 ? O2G ATP 5101 E 1 HETATM 4 O O3G ATP . . . L 3 258.574 278.915 219.078 1 153.51 ? O3G ATP 5101 E 1 HETATM 5 P PB ATP . . . L 3 259.298 275.818 219.778 1 153.51 ? PB ATP 5101 E 1 HETATM 6 O O1B ATP . . . L 3 260.591 275.254 220.309 1 153.51 ? O1B ATP 5101 E 1 HETATM 7 O O2B ATP . . . L 3 258.39 276.561 220.725 1 153.51 ? O2B ATP 5101 E 1 HETATM 8 O O3B ATP . . . L 3 259.654 276.757 218.52 1 153.51 ? O3B ATP 5101 E 1 HETATM 9 P PA ATP . . . L 3 259.057 273.487 218.17 1 153.51 ? PA ATP 5101 E 1 HETATM 10 O O1A ATP . . . L 3 259.941 274.097 217.114 1 153.51 ? O1A ATP 5101 E 1 HETATM 11 O O2A ATP . . . L 3 257.905 272.611 217.752 1 153.51 ? O2A ATP 5101 E 1 HETATM 12 O O3A ATP . . . L 3 258.429 274.653 219.084 1 153.51 ? O3A ATP 5101 E 1 HETATM 13 O O5' ATP . . . L 3 259.96 272.702 219.237 1 153.51 ? O5' ATP 5101 E 1 HETATM 14 C C5' ATP . . . L 3 260.029 271.283 219.235 1 153.51 ? C5' ATP 5101 E 1 HETATM 15 C C4' ATP . . . L 3 259.23 270.774 220.431 1 153.51 ? C4' ATP 5101 E 1 HETATM 16 O O4' ATP . . . L 3 259.925 269.74 221.119 1 153.51 ? O4' ATP 5101 E 1 HETATM 17 C C3' ATP . . . L 3 258.973 271.857 221.47 1 153.51 ? C3' ATP 5101 E 1 HETATM 18 O O3' ATP . . . L 3 257.665 272.396 221.267 1 153.51 ? O3' ATP 5101 E 1 HETATM 19 C C2' ATP . . . L 3 259.069 271.16 222.808 1 153.51 ? C2' ATP 5101 E 1 HETATM 20 O O2' ATP . . . L 3 257.797 271.147 223.467 1 153.51 ? O2' ATP 5101 E 1 HETATM 21 C C1' ATP . . . L 3 259.469 269.738 222.47 1 153.51 ? C1' ATP 5101 E 1 HETATM 22 N N9 ATP . . . L 3 260.508 269.263 223.405 1 153.51 ? N9 ATP 5101 E 1 HETATM 23 C C8 ATP . . . L 3 261.812 269.111 223.128 1 153.51 ? C8 ATP 5101 E 1 HETATM 24 N N7 ATP . . . L 3 262.472 268.646 224.213 1 153.51 ? N7 ATP 5101 E 1 HETATM 25 C C5 ATP . . . L 3 261.581 268.504 225.197 1 153.51 ? C5 ATP 5101 E 1 HETATM 26 C C6 ATP . . . L 3 261.631 268.062 226.594 1 153.51 ? C6 ATP 5101 E 1 HETATM 27 N N6 ATP . . . L 3 262.796 267.677 227.149 1 153.51 ? N6 ATP 5101 E 1 HETATM 28 N N1 ATP . . . L 3 260.488 268.046 227.3 1 153.51 ? N1 ATP 5101 E 1 HETATM 29 C C2 ATP . . . L 3 259.323 268.429 226.745 1 153.51 ? C2 ATP 5101 E 1 HETATM 30 N N3 ATP . . . L 3 259.208 268.855 225.476 1 153.51 ? N3 ATP 5101 E 1 HETATM 31 C C4 ATP . . . L 3 260.283 268.903 224.662 1 153.51 ? C4 ATP 5101 E 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 143 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #