data_5TAQ # _model_server_result.job_id P_nqBt62EgOzjwe4zbOSaA _model_server_result.datetime_utc '2024-11-04 20:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5taq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":5102}' # _entry.id 5TAQ # _exptl.entry_id 5TAQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.191 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TAQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N ? 4 R N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OE1 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 E OE2 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 E OE1 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 E OE2 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 E SG CYS 4337 B CYS 4958 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc6 E SG CYS 4340 B CYS 4961 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 E NE2 HIS 4357 B HIS 4978 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 E NE2 HIS 4362 B HIS 4983 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc9 E O THR 4380 B THR 5001 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc10 F OE1 GLU 3532 E GLU 3893 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 F OE2 GLU 3532 E GLU 3893 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc12 F OE1 GLU 3606 E GLU 3967 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc13 F OE2 GLU 3606 E GLU 3967 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc14 F SG CYS 4337 E CYS 4958 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc15 F SG CYS 4340 E CYS 4961 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 F NE2 HIS 4357 E HIS 4978 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc17 F NE2 HIS 4362 E HIS 4983 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc18 F O THR 4380 E THR 5001 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc19 G OE1 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc20 G OE2 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc21 G OE1 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc22 G OE2 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc23 G SG CYS 4337 I CYS 4958 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc24 G SG CYS 4340 I CYS 4961 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc25 G NE2 HIS 4357 I HIS 4978 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc26 G NE2 HIS 4362 I HIS 4983 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc27 G O THR 4380 I THR 5001 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc28 H OE1 GLU 3532 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc29 H OE2 GLU 3532 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc30 H OE1 GLU 3606 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc31 H OE2 GLU 3606 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc32 H SG CYS 4337 G CYS 4958 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc33 H SG CYS 4340 G CYS 4961 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc34 H NE2 HIS 4357 G HIS 4978 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc35 H NE2 HIS 4362 G HIS 4983 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc36 H O THR 4380 G THR 5001 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 119 n y N1 C10 CFF sing 120 n n N1 C6 CFF sing 121 n y C2 N3 CFF sing 122 n y C2 O11 CFF doub 123 n n C10 H101 CFF sing 124 n n C10 H102 CFF sing 125 n n C10 H103 CFF sing 126 n n C6 C5 CFF sing 127 n y C6 O13 CFF doub 128 n n N3 C12 CFF sing 129 n n N3 C4 CFF sing 130 n y C12 H121 CFF sing 131 n n C12 H122 CFF sing 132 n n C12 H123 CFF sing 133 n n C4 C5 CFF doub 134 n y C4 N9 CFF sing 135 n y C5 N7 CFF sing 136 n y N9 C8 CFF doub 137 n y N7 C8 CFF sing 138 n y N7 C14 CFF sing 139 n n C8 H81 CFF sing 140 n n C14 H141 CFF sing 141 n n C14 H142 CFF sing 142 n n C14 H143 CFF sing 143 n n # _atom_sites.entry_id 5TAQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP B 1 5101 5300 ATP ATP . J 4 CFF B 1 5102 5400 CFF CFF . K 5 ZN B 1 5103 6000 ZN ZN . L 6 CA B 1 5104 7000 CA CA . M 3 ATP E 1 5101 5300 ATP ATP . N 4 CFF E 1 5102 5400 CFF CFF . O 5 ZN E 1 5103 6000 ZN ZN . P 6 CA E 1 5104 7000 CA CA . Q 3 ATP I 1 5101 5300 ATP ATP . R 4 CFF I 1 5102 5400 CFF CFF . S 5 ZN I 1 5103 6000 ZN ZN . T 6 CA I 1 5104 7000 CA CA . U 3 ATP G 1 5101 5300 ATP ATP . V 4 CFF G 1 5102 5400 CFF CFF . W 5 ZN G 1 5103 6000 ZN ZN . X 6 CA G 1 5104 7000 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . R 4 216.865 227.457 227.173 1 79.78 ? N1 CFF 5102 I 1 HETATM 2 C C2 CFF . . . R 4 216.69 226.129 227.312 1 79.78 ? C2 CFF 5102 I 1 HETATM 3 C C10 CFF . . . R 4 216.709 228.324 228.319 1 79.78 ? C10 CFF 5102 I 1 HETATM 4 C C6 CFF . . . R 4 217.194 227.963 226.006 1 79.78 ? C6 CFF 5102 I 1 HETATM 5 N N3 CFF . . . R 4 216.818 225.311 226.251 1 79.78 ? N3 CFF 5102 I 1 HETATM 6 O O11 CFF . . . R 4 216.378 225.681 228.36 1 79.78 ? O11 CFF 5102 I 1 HETATM 7 C C12 CFF . . . R 4 216.6 223.882 226.361 1 79.78 ? C12 CFF 5102 I 1 HETATM 8 C C4 CFF . . . R 4 217.147 225.817 225.066 1 79.78 ? C4 CFF 5102 I 1 HETATM 9 C C5 CFF . . . R 4 217.337 227.127 224.923 1 79.78 ? C5 CFF 5102 I 1 HETATM 10 N N9 CFF . . . R 4 217.341 225.223 223.889 1 79.78 ? N9 CFF 5102 I 1 HETATM 11 O O13 CFF . . . R 4 217.357 229.131 225.905 1 79.78 ? O13 CFF 5102 I 1 HETATM 12 N N7 CFF . . . R 4 217.654 227.344 223.644 1 79.78 ? N7 CFF 5102 I 1 HETATM 13 C C8 CFF . . . R 4 217.657 226.171 223.012 1 79.78 ? C8 CFF 5102 I 1 HETATM 14 C C14 CFF . . . R 4 217.989 228.438 222.756 1 79.78 ? C14 CFF 5102 I 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 469 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #