data_5TAQ # _model_server_result.job_id Wo3-3KN0F8dANtUl2b4IgQ _model_server_result.datetime_utc '2024-11-04 20:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5taq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":5104}' # _entry.id 5TAQ # _exptl.entry_id 5TAQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TAQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 P N N ? 6 T N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OE1 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 E OE2 GLU 3532 B GLU 3893 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 E OE1 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 E OE2 GLU 3606 B GLU 3967 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 E SG CYS 4337 B CYS 4958 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc6 E SG CYS 4340 B CYS 4961 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 E NE2 HIS 4357 B HIS 4978 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 E NE2 HIS 4362 B HIS 4983 1_555 K ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc9 E O THR 4380 B THR 5001 1_555 L CA CA . B CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc10 F OE1 GLU 3532 E GLU 3893 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 F OE2 GLU 3532 E GLU 3893 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc12 F OE1 GLU 3606 E GLU 3967 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc13 F OE2 GLU 3606 E GLU 3967 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc14 F SG CYS 4337 E CYS 4958 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc15 F SG CYS 4340 E CYS 4961 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 F NE2 HIS 4357 E HIS 4978 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc17 F NE2 HIS 4362 E HIS 4983 1_555 O ZN ZN . E ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc18 F O THR 4380 E THR 5001 1_555 P CA CA . E CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc19 G OE1 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc20 G OE2 GLU 3532 I GLU 3893 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc21 G OE1 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc22 G OE2 GLU 3606 I GLU 3967 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc23 G SG CYS 4337 I CYS 4958 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc24 G SG CYS 4340 I CYS 4961 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc25 G NE2 HIS 4357 I HIS 4978 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc26 G NE2 HIS 4362 I HIS 4983 1_555 S ZN ZN . I ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc27 G O THR 4380 I THR 5001 1_555 T CA CA . I CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc28 H OE1 GLU 3532 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc29 H OE2 GLU 3532 G GLU 3893 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc30 H OE1 GLU 3606 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc31 H OE2 GLU 3606 G GLU 3967 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc32 H SG CYS 4337 G CYS 4958 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc33 H SG CYS 4340 G CYS 4961 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc34 H NE2 HIS 4357 G HIS 4978 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc35 H NE2 HIS 4362 G HIS 4983 1_555 W ZN ZN . G ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc36 H O THR 4380 G THR 5001 1_555 X CA CA . G CA 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TAQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP B 1 5101 5300 ATP ATP . J 4 CFF B 1 5102 5400 CFF CFF . K 5 ZN B 1 5103 6000 ZN ZN . L 6 CA B 1 5104 7000 CA CA . M 3 ATP E 1 5101 5300 ATP ATP . N 4 CFF E 1 5102 5400 CFF CFF . O 5 ZN E 1 5103 6000 ZN ZN . P 6 CA E 1 5104 7000 CA CA . Q 3 ATP I 1 5101 5300 ATP ATP . R 4 CFF I 1 5102 5400 CFF CFF . S 5 ZN I 1 5103 6000 ZN ZN . T 6 CA I 1 5104 7000 CA CA . U 3 ATP G 1 5101 5300 ATP ATP . V 4 CFF G 1 5102 5400 CFF CFF . W 5 ZN G 1 5103 6000 ZN ZN . X 6 CA G 1 5104 7000 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 6 _atom_site.Cartn_x 280.792 _atom_site.Cartn_y 217.231 _atom_site.Cartn_z 245.336 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5104 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 420 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #