data_5TBM # _model_server_result.job_id dwDp6C2Yfbqt1fk7nm8Dpg _model_server_result.datetime_utc '2024-12-14 03:41:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5TBM # _exptl.entry_id 5TBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[(1S)-2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.24 _cell.angle_gamma 90 _cell.entry_id 5TBM _cell.length_a 73.4 _cell.length_b 84.097 _cell.length_c 41.401 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D 2 1 B,E 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_544 -x+1/2,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 48.278264 -42.0485 -39.749045 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H12 F3 N O4 S' _chem_comp.formula_weight 383.342 _chem_comp.id 79A _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[(1S)-2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PT2385 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C11 79A sing 1 n n F2 C11 79A sing 2 n n C11 C15 79A sing 3 n n C11 C12 79A sing 4 n n C15 C14 79A sing 5 n n O1 C8 79A sing 6 n n O1 C1 79A sing 7 n n C12 O4 79A sing 8 n n C12 C13 79A sing 9 n n C9 C8 79A doub 10 n y C9 C10 79A sing 11 n y C14 C1 79A doub 12 n y C14 C13 79A sing 13 n y C8 C7 79A sing 14 n y F1 C10 79A sing 15 n n C10 C5 79A doub 16 n y C1 C2 79A sing 17 n y C13 C4 79A doub 18 n y C7 C6 79A doub 19 n y C5 C6 79A sing 20 n y C6 C17 79A sing 21 n n C2 C3 79A doub 22 n y O2 S1 79A doub 23 n n C4 C3 79A sing 24 n y C4 S1 79A sing 25 n n C17 N1 79A trip 26 n n S1 C16 79A sing 27 n n S1 O3 79A doub 28 n n C7 H1 79A sing 29 n n C9 H2 79A sing 30 n n C5 H3 79A sing 31 n n C15 H4 79A sing 32 n n C15 H5 79A sing 33 n n C12 H6 79A sing 34 n n O4 H7 79A sing 35 n n C16 H8 79A sing 36 n n C16 H9 79A sing 37 n n C16 H10 79A sing 38 n n C3 H11 79A sing 39 n n C2 H12 79A sing 40 n n # _atom_sites.entry_id 5TBM _atom_sites.fract_transf_matrix[1][1] 0.013624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003967 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 79A A 1 401 1 79A UNK . D 4 HOH A 1 501 17 HOH HOH . D 4 HOH A 2 502 16 HOH HOH . D 4 HOH A 3 503 15 HOH HOH . D 4 HOH A 4 504 2 HOH HOH . E 4 HOH B 1 501 5 HOH HOH . E 4 HOH B 2 502 8 HOH HOH . E 4 HOH B 3 503 6 HOH HOH . E 4 HOH B 4 504 1 HOH HOH . E 4 HOH B 5 505 7 HOH HOH . E 4 HOH B 6 506 12 HOH HOH . E 4 HOH B 7 507 10 HOH HOH . E 4 HOH B 8 508 3 HOH HOH . E 4 HOH B 9 509 11 HOH HOH . E 4 HOH B 10 510 4 HOH HOH . E 4 HOH B 11 511 13 HOH HOH . E 4 HOH B 12 512 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 79A . . . C 3 18.441 1.963 -8.638 1 36.38 ? N1 79A 401 A 1 HETATM 2 C C17 79A . . . C 3 18.993 1.124 -9.264 1 37.58 ? C17 79A 401 A 1 HETATM 3 C C6 79A . . . C 3 19.66 0.223 -9.932 1 32.39 ? C6 79A 401 A 1 HETATM 4 C C7 79A . . . C 3 20.931 0.481 -10.449 1 32.25 ? C7 79A 401 A 1 HETATM 5 C C8 79A . . . C 3 21.577 -0.506 -11.164 1 28.63 ? C8 79A 401 A 1 HETATM 6 C C9 79A . . . C 3 20.974 -1.739 -11.43 1 28.91 ? C9 79A 401 A 1 HETATM 7 C C10 79A . . . C 3 19.707 -1.996 -10.899 1 32.3 ? C10 79A 401 A 1 HETATM 8 F F1 79A . . . C 3 19.08 -3.186 -11.078 1 33.88 ? F1 79A 401 A 1 HETATM 9 C C5 79A . . . C 3 19.08 -1.006 -10.167 1 35.19 ? C5 79A 401 A 1 HETATM 10 O O1 79A . . . C 3 22.789 -0.124 -11.649 1 27.71 ? O1 79A 401 A 1 HETATM 11 C C1 79A . . . C 3 23.852 -0.285 -10.804 1 28.26 ? C1 79A 401 A 1 HETATM 12 C C14 79A . . . C 3 25.014 0.103 -11.392 1 28.69 ? C14 79A 401 A 1 HETATM 13 C C15 79A . . . C 3 25.215 0.646 -12.798 1 30.75 ? C15 79A 401 A 1 HETATM 14 C C11 79A . . . C 3 26.709 0.396 -12.998 1 39.57 ? C11 79A 401 A 1 HETATM 15 F F3 79A . . . C 3 27.186 1.299 -13.846 1 39.31 ? F3 79A 401 A 1 HETATM 16 F F2 79A . . . C 3 26.866 -0.788 -13.547 1 36.91 ? F2 79A 401 A 1 HETATM 17 C C13 79A . . . C 3 26.191 -0.063 -10.69 1 32.12 ? C13 79A 401 A 1 HETATM 18 C C12 79A . . . C 3 27.304 0.394 -11.565 1 31.93 ? C12 79A 401 A 1 HETATM 19 O O4 79A . . . C 3 27.634 1.726 -11.186 1 37.62 ? O4 79A 401 A 1 HETATM 20 C C4 79A . . . C 3 26.172 -0.585 -9.39 1 33.6 ? C4 79A 401 A 1 HETATM 21 S S1 79A . . . C 3 27.588 -0.747 -8.548 1 39.55 ? S1 79A 401 A 1 HETATM 22 C C16 79A . . . C 3 27.906 0.824 -8.226 1 33.31 ? C16 79A 401 A 1 HETATM 23 O O3 79A . . . C 3 27.223 -1.585 -7.442 1 35.97 ? O3 79A 401 A 1 HETATM 24 O O2 79A . . . C 3 28.463 -1.39 -9.478 1 35.9 ? O2 79A 401 A 1 HETATM 25 C C3 79A . . . C 3 24.994 -0.935 -8.757 1 30.98 ? C3 79A 401 A 1 HETATM 26 C C2 79A . . . C 3 23.769 -0.779 -9.506 1 24.58 ? C2 79A 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #