data_5TBO # _model_server_result.job_id Yd0PAwiuL4nZtx91mbzlMQ _model_server_result.datetime_utc '2024-10-12 15:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5TBO # _exptl.entry_id 5TBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TBO _cell.length_a 86.38 _cell.length_b 86.38 _cell.length_c 138.608 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 121 n n N1 C10 FMN doub 122 n n C2 O2 FMN doub 123 n n C2 N3 FMN sing 124 n n N3 C4 FMN sing 125 n n N3 HN3 FMN sing 126 n n C4 O4 FMN doub 127 n n C4 C4A FMN sing 128 n n C4A N5 FMN doub 129 n n C4A C10 FMN sing 130 n n N5 C5A FMN sing 131 n n C5A C6 FMN doub 132 n y C5A C9A FMN sing 133 n y C6 C7 FMN sing 134 n y C6 H6 FMN sing 135 n n C7 C7M FMN sing 136 n n C7 C8 FMN doub 137 n y C7M HM71 FMN sing 138 n n C7M HM72 FMN sing 139 n n C7M HM73 FMN sing 140 n n C8 C8M FMN sing 141 n n C8 C9 FMN sing 142 n y C8M HM81 FMN sing 143 n n C8M HM82 FMN sing 144 n n C8M HM83 FMN sing 145 n n C9 C9A FMN doub 146 n y C9 H9 FMN sing 147 n n C9A N10 FMN sing 148 n n N10 C10 FMN sing 149 n n N10 C1' FMN sing 150 n n C1' C2' FMN sing 151 n n C1' "H1'1" FMN sing 152 n n C1' "H1'2" FMN sing 153 n n C2' O2' FMN sing 154 n n C2' C3' FMN sing 155 n n C2' H2' FMN sing 156 n n O2' HO2' FMN sing 157 n n C3' O3' FMN sing 158 n n C3' C4' FMN sing 159 n n C3' H3' FMN sing 160 n n O3' HO3' FMN sing 161 n n C4' O4' FMN sing 162 n n C4' C5' FMN sing 163 n n C4' H4' FMN sing 164 n n O4' HO4' FMN sing 165 n n C5' O5' FMN sing 166 n n C5' "H5'1" FMN sing 167 n n C5' "H5'2" FMN sing 168 n n O5' P FMN sing 169 n n P O1P FMN doub 170 n n P O2P FMN sing 171 n n P O3P FMN sing 172 n n O2P HOP2 FMN sing 173 n n O3P HOP3 FMN sing 174 n n # _atom_sites.entry_id 5TBO _atom_sites.fract_transf_matrix[1][1] 0.011577 _atom_sites.fract_transf_matrix[1][2] 0.006684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78Z A 1 1001 1001 78Z D21 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 1004 LDA LDA . F 6 GOL A 1 1005 1005 GOL GOL . G 6 GOL A 1 1006 1006 GOL GOL . H 7 HOH A 1 1101 35 HOH HOH . H 7 HOH A 2 1102 120 HOH HOH . H 7 HOH A 3 1103 108 HOH HOH . H 7 HOH A 4 1104 3 HOH HOH . H 7 HOH A 5 1105 16 HOH HOH . H 7 HOH A 6 1106 10 HOH HOH . H 7 HOH A 7 1107 124 HOH HOH . H 7 HOH A 8 1108 86 HOH HOH . H 7 HOH A 9 1109 17 HOH HOH . H 7 HOH A 10 1110 99 HOH HOH . H 7 HOH A 11 1111 89 HOH HOH . H 7 HOH A 12 1112 97 HOH HOH . H 7 HOH A 13 1113 27 HOH HOH . H 7 HOH A 14 1114 49 HOH HOH . H 7 HOH A 15 1115 7 HOH HOH . H 7 HOH A 16 1116 22 HOH HOH . H 7 HOH A 17 1117 28 HOH HOH . H 7 HOH A 18 1118 102 HOH HOH . H 7 HOH A 19 1119 2 HOH HOH . H 7 HOH A 20 1120 61 HOH HOH . H 7 HOH A 21 1121 54 HOH HOH . H 7 HOH A 22 1122 101 HOH HOH . H 7 HOH A 23 1123 5 HOH HOH . H 7 HOH A 24 1124 62 HOH HOH . H 7 HOH A 25 1125 12 HOH HOH . H 7 HOH A 26 1126 38 HOH HOH . H 7 HOH A 27 1127 58 HOH HOH . H 7 HOH A 28 1128 74 HOH HOH . H 7 HOH A 29 1129 24 HOH HOH . H 7 HOH A 30 1130 32 HOH HOH . H 7 HOH A 31 1131 100 HOH HOH . H 7 HOH A 32 1132 60 HOH HOH . H 7 HOH A 33 1133 114 HOH HOH . H 7 HOH A 34 1134 34 HOH HOH . H 7 HOH A 35 1135 33 HOH HOH . H 7 HOH A 36 1136 110 HOH HOH . H 7 HOH A 37 1137 36 HOH HOH . H 7 HOH A 38 1138 1 HOH HOH . H 7 HOH A 39 1139 13 HOH HOH . H 7 HOH A 40 1140 79 HOH HOH . H 7 HOH A 41 1141 14 HOH HOH . H 7 HOH A 42 1142 40 HOH HOH . H 7 HOH A 43 1143 39 HOH HOH . H 7 HOH A 44 1144 45 HOH HOH . H 7 HOH A 45 1145 90 HOH HOH . H 7 HOH A 46 1146 4 HOH HOH . H 7 HOH A 47 1147 8 HOH HOH . H 7 HOH A 48 1148 6 HOH HOH . H 7 HOH A 49 1149 83 HOH HOH . H 7 HOH A 50 1150 75 HOH HOH . H 7 HOH A 51 1151 111 HOH HOH . H 7 HOH A 52 1152 118 HOH HOH . H 7 HOH A 53 1153 26 HOH HOH . H 7 HOH A 54 1154 56 HOH HOH . H 7 HOH A 55 1155 11 HOH HOH . H 7 HOH A 56 1156 20 HOH HOH . H 7 HOH A 57 1157 25 HOH HOH . H 7 HOH A 58 1158 30 HOH HOH . H 7 HOH A 59 1159 73 HOH HOH . H 7 HOH A 60 1160 41 HOH HOH . H 7 HOH A 61 1161 117 HOH HOH . H 7 HOH A 62 1162 18 HOH HOH . H 7 HOH A 63 1163 96 HOH HOH . H 7 HOH A 64 1164 81 HOH HOH . H 7 HOH A 65 1165 64 HOH HOH . H 7 HOH A 66 1166 78 HOH HOH . H 7 HOH A 67 1167 105 HOH HOH . H 7 HOH A 68 1168 15 HOH HOH . H 7 HOH A 69 1169 104 HOH HOH . H 7 HOH A 70 1170 113 HOH HOH . H 7 HOH A 71 1171 76 HOH HOH . H 7 HOH A 72 1172 93 HOH HOH . H 7 HOH A 73 1173 72 HOH HOH . H 7 HOH A 74 1174 82 HOH HOH . H 7 HOH A 75 1175 95 HOH HOH . H 7 HOH A 76 1176 98 HOH HOH . H 7 HOH A 77 1177 92 HOH HOH . H 7 HOH A 78 1178 9 HOH HOH . H 7 HOH A 79 1179 46 HOH HOH . H 7 HOH A 80 1180 91 HOH HOH . H 7 HOH A 81 1181 50 HOH HOH . H 7 HOH A 82 1182 109 HOH HOH . H 7 HOH A 83 1183 63 HOH HOH . H 7 HOH A 84 1184 23 HOH HOH . H 7 HOH A 85 1185 52 HOH HOH . H 7 HOH A 86 1186 66 HOH HOH . H 7 HOH A 87 1187 88 HOH HOH . H 7 HOH A 88 1188 85 HOH HOH . H 7 HOH A 89 1189 31 HOH HOH . H 7 HOH A 90 1190 59 HOH HOH . H 7 HOH A 91 1191 65 HOH HOH . H 7 HOH A 92 1192 119 HOH HOH . H 7 HOH A 93 1193 19 HOH HOH . H 7 HOH A 94 1194 29 HOH HOH . H 7 HOH A 95 1195 71 HOH HOH . H 7 HOH A 96 1196 42 HOH HOH . H 7 HOH A 97 1197 106 HOH HOH . H 7 HOH A 98 1198 94 HOH HOH . H 7 HOH A 99 1199 122 HOH HOH . H 7 HOH A 100 1200 48 HOH HOH . H 7 HOH A 101 1201 37 HOH HOH . H 7 HOH A 102 1202 126 HOH HOH . H 7 HOH A 103 1203 116 HOH HOH . H 7 HOH A 104 1204 44 HOH HOH . H 7 HOH A 105 1205 77 HOH HOH . H 7 HOH A 106 1206 53 HOH HOH . H 7 HOH A 107 1207 103 HOH HOH . H 7 HOH A 108 1208 51 HOH HOH . H 7 HOH A 109 1209 67 HOH HOH . H 7 HOH A 110 1210 70 HOH HOH . H 7 HOH A 111 1211 125 HOH HOH . H 7 HOH A 112 1212 47 HOH HOH . H 7 HOH A 113 1213 68 HOH HOH . H 7 HOH A 114 1214 55 HOH HOH . H 7 HOH A 115 1215 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 19.997 -8.244 -3.745 1 10.63 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 18.877 -8.204 -2.949 1 14.22 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 19.009 -8.021 -1.737 1 15.51 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 17.628 -8.367 -3.516 1 16.87 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 17.502 -8.569 -4.876 1 12.85 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 16.383 -8.716 -5.375 1 14.21 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 18.638 -8.613 -5.678 1 14.51 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 18.529 -8.813 -7.039 1 21.09 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 19.662 -8.862 -7.826 1 15.57 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 19.543 -9.071 -9.196 1 20.11 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 20.672 -9.123 -10.007 1 16.89 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 20.492 -9.35 -11.487 1 24.72 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 21.928 -8.962 -9.426 1 21.8 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 23.188 -9.001 -10.237 1 32.84 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 22.043 -8.753 -8.059 1 19.57 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 20.915 -8.703 -7.249 1 21.74 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 21.029 -8.495 -5.882 1 8.85 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 19.889 -8.453 -5.102 1 16.2 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 22.375 -8.315 -5.227 1 17.7 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 22.991 -9.677 -4.934 1 17.11 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 22.16 -10.341 -4.011 1 21.73 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 24.399 -9.564 -4.349 1 20.08 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 24.339 -8.89 -3.112 1 19.58 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 25.343 -8.823 -5.295 1 14.5 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 25.171 -9.305 -6.613 1 18.39 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 26.81 -8.974 -4.904 1 18.45 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 27.191 -10.331 -4.963 1 27.46 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 28.208 -10.857 -6.097 1 26.74 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 27.454 -10.908 -7.402 1 17.81 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 28.705 -12.237 -5.732 1 24.03 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 29.37 -9.901 -6.241 1 26.76 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 16.779 -8.338 -2.916 1 20.25 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 18.554 -9.196 -9.639 1 24.13 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 21.467 -9.363 -11.973 1 29.67 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 19.887 -8.547 -11.907 1 29.67 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 19.992 -10.305 -11.649 1 29.67 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 24.046 -8.849 -9.583 1 39.41 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 23.273 -9.969 -10.73 1 39.41 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 23.16 -8.212 -10.989 1 39.41 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 23.031 -8.627 -7.615 1 23.49 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 23.031 -7.748 -5.887 1 21.24 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 22.26 -7.755 -4.299 1 21.24 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 23.042 -10.246 -5.862 1 20.53 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 22.679 -10.574 -3.213 1 26.08 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 24.788 -10.57 -4.196 1 24.1 ? H3' FMN 1002 A 1 HETATM 46 H H4' FMN . . . C 3 25.091 -7.763 -5.264 1 17.4 ? H4' FMN 1002 A 1 HETATM 47 H HO4' FMN . . . C 3 26.032 -9.62 -6.96 1 22.07 ? HO4' FMN 1002 A 1 HETATM 48 H "H5'1" FMN . . . C 3 26.96 -8.595 -3.893 1 22.14 ? "H5'1" FMN 1002 A 1 HETATM 49 H "H5'2" FMN . . . C 3 27.432 -8.388 -5.58 1 22.14 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 49 #