data_5TBO # _model_server_result.job_id y1pn1GD6rCNDKQLrdBLNlA _model_server_result.datetime_utc '2024-10-12 15:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 5TBO # _exptl.entry_id 5TBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TBO _cell.length_a 86.38 _cell.length_b 86.38 _cell.length_c 138.608 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 278 n n N1 CM1 LDA sing 279 n n N1 CM2 LDA sing 280 n n N1 C1 LDA sing 281 n n CM1 HM11 LDA sing 282 n n CM1 HM12 LDA sing 283 n n CM1 HM13 LDA sing 284 n n CM2 HM21 LDA sing 285 n n CM2 HM22 LDA sing 286 n n CM2 HM23 LDA sing 287 n n C1 C2 LDA sing 288 n n C1 H11 LDA sing 289 n n C1 H12 LDA sing 290 n n C2 C3 LDA sing 291 n n C2 H21 LDA sing 292 n n C2 H22 LDA sing 293 n n C3 C4 LDA sing 294 n n C3 H31 LDA sing 295 n n C3 H32 LDA sing 296 n n C4 C5 LDA sing 297 n n C4 H41 LDA sing 298 n n C4 H42 LDA sing 299 n n C5 C6 LDA sing 300 n n C5 H51 LDA sing 301 n n C5 H52 LDA sing 302 n n C6 C7 LDA sing 303 n n C6 H61 LDA sing 304 n n C6 H62 LDA sing 305 n n C7 C8 LDA sing 306 n n C7 H71 LDA sing 307 n n C7 H72 LDA sing 308 n n C8 C9 LDA sing 309 n n C8 H81 LDA sing 310 n n C8 H82 LDA sing 311 n n C9 C10 LDA sing 312 n n C9 H91 LDA sing 313 n n C9 H92 LDA sing 314 n n C10 C11 LDA sing 315 n n C10 H101 LDA sing 316 n n C10 H102 LDA sing 317 n n C11 C12 LDA sing 318 n n C11 H111 LDA sing 319 n n C11 H112 LDA sing 320 n n C12 H121 LDA sing 321 n n C12 H122 LDA sing 322 n n C12 H123 LDA sing 323 n n # _atom_sites.entry_id 5TBO _atom_sites.fract_transf_matrix[1][1] 0.011577 _atom_sites.fract_transf_matrix[1][2] 0.006684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78Z A 1 1001 1001 78Z D21 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 1004 LDA LDA . F 6 GOL A 1 1005 1005 GOL GOL . G 6 GOL A 1 1006 1006 GOL GOL . H 7 HOH A 1 1101 35 HOH HOH . H 7 HOH A 2 1102 120 HOH HOH . H 7 HOH A 3 1103 108 HOH HOH . H 7 HOH A 4 1104 3 HOH HOH . H 7 HOH A 5 1105 16 HOH HOH . H 7 HOH A 6 1106 10 HOH HOH . H 7 HOH A 7 1107 124 HOH HOH . H 7 HOH A 8 1108 86 HOH HOH . H 7 HOH A 9 1109 17 HOH HOH . H 7 HOH A 10 1110 99 HOH HOH . H 7 HOH A 11 1111 89 HOH HOH . H 7 HOH A 12 1112 97 HOH HOH . H 7 HOH A 13 1113 27 HOH HOH . H 7 HOH A 14 1114 49 HOH HOH . H 7 HOH A 15 1115 7 HOH HOH . H 7 HOH A 16 1116 22 HOH HOH . H 7 HOH A 17 1117 28 HOH HOH . H 7 HOH A 18 1118 102 HOH HOH . H 7 HOH A 19 1119 2 HOH HOH . H 7 HOH A 20 1120 61 HOH HOH . H 7 HOH A 21 1121 54 HOH HOH . H 7 HOH A 22 1122 101 HOH HOH . H 7 HOH A 23 1123 5 HOH HOH . H 7 HOH A 24 1124 62 HOH HOH . H 7 HOH A 25 1125 12 HOH HOH . H 7 HOH A 26 1126 38 HOH HOH . H 7 HOH A 27 1127 58 HOH HOH . H 7 HOH A 28 1128 74 HOH HOH . H 7 HOH A 29 1129 24 HOH HOH . H 7 HOH A 30 1130 32 HOH HOH . H 7 HOH A 31 1131 100 HOH HOH . H 7 HOH A 32 1132 60 HOH HOH . H 7 HOH A 33 1133 114 HOH HOH . H 7 HOH A 34 1134 34 HOH HOH . H 7 HOH A 35 1135 33 HOH HOH . H 7 HOH A 36 1136 110 HOH HOH . H 7 HOH A 37 1137 36 HOH HOH . H 7 HOH A 38 1138 1 HOH HOH . H 7 HOH A 39 1139 13 HOH HOH . H 7 HOH A 40 1140 79 HOH HOH . H 7 HOH A 41 1141 14 HOH HOH . H 7 HOH A 42 1142 40 HOH HOH . H 7 HOH A 43 1143 39 HOH HOH . H 7 HOH A 44 1144 45 HOH HOH . H 7 HOH A 45 1145 90 HOH HOH . H 7 HOH A 46 1146 4 HOH HOH . H 7 HOH A 47 1147 8 HOH HOH . H 7 HOH A 48 1148 6 HOH HOH . H 7 HOH A 49 1149 83 HOH HOH . H 7 HOH A 50 1150 75 HOH HOH . H 7 HOH A 51 1151 111 HOH HOH . H 7 HOH A 52 1152 118 HOH HOH . H 7 HOH A 53 1153 26 HOH HOH . H 7 HOH A 54 1154 56 HOH HOH . H 7 HOH A 55 1155 11 HOH HOH . H 7 HOH A 56 1156 20 HOH HOH . H 7 HOH A 57 1157 25 HOH HOH . H 7 HOH A 58 1158 30 HOH HOH . H 7 HOH A 59 1159 73 HOH HOH . H 7 HOH A 60 1160 41 HOH HOH . H 7 HOH A 61 1161 117 HOH HOH . H 7 HOH A 62 1162 18 HOH HOH . H 7 HOH A 63 1163 96 HOH HOH . H 7 HOH A 64 1164 81 HOH HOH . H 7 HOH A 65 1165 64 HOH HOH . H 7 HOH A 66 1166 78 HOH HOH . H 7 HOH A 67 1167 105 HOH HOH . H 7 HOH A 68 1168 15 HOH HOH . H 7 HOH A 69 1169 104 HOH HOH . H 7 HOH A 70 1170 113 HOH HOH . H 7 HOH A 71 1171 76 HOH HOH . H 7 HOH A 72 1172 93 HOH HOH . H 7 HOH A 73 1173 72 HOH HOH . H 7 HOH A 74 1174 82 HOH HOH . H 7 HOH A 75 1175 95 HOH HOH . H 7 HOH A 76 1176 98 HOH HOH . H 7 HOH A 77 1177 92 HOH HOH . H 7 HOH A 78 1178 9 HOH HOH . H 7 HOH A 79 1179 46 HOH HOH . H 7 HOH A 80 1180 91 HOH HOH . H 7 HOH A 81 1181 50 HOH HOH . H 7 HOH A 82 1182 109 HOH HOH . H 7 HOH A 83 1183 63 HOH HOH . H 7 HOH A 84 1184 23 HOH HOH . H 7 HOH A 85 1185 52 HOH HOH . H 7 HOH A 86 1186 66 HOH HOH . H 7 HOH A 87 1187 88 HOH HOH . H 7 HOH A 88 1188 85 HOH HOH . H 7 HOH A 89 1189 31 HOH HOH . H 7 HOH A 90 1190 59 HOH HOH . H 7 HOH A 91 1191 65 HOH HOH . H 7 HOH A 92 1192 119 HOH HOH . H 7 HOH A 93 1193 19 HOH HOH . H 7 HOH A 94 1194 29 HOH HOH . H 7 HOH A 95 1195 71 HOH HOH . H 7 HOH A 96 1196 42 HOH HOH . H 7 HOH A 97 1197 106 HOH HOH . H 7 HOH A 98 1198 94 HOH HOH . H 7 HOH A 99 1199 122 HOH HOH . H 7 HOH A 100 1200 48 HOH HOH . H 7 HOH A 101 1201 37 HOH HOH . H 7 HOH A 102 1202 126 HOH HOH . H 7 HOH A 103 1203 116 HOH HOH . H 7 HOH A 104 1204 44 HOH HOH . H 7 HOH A 105 1205 77 HOH HOH . H 7 HOH A 106 1206 53 HOH HOH . H 7 HOH A 107 1207 103 HOH HOH . H 7 HOH A 108 1208 51 HOH HOH . H 7 HOH A 109 1209 67 HOH HOH . H 7 HOH A 110 1210 70 HOH HOH . H 7 HOH A 111 1211 125 HOH HOH . H 7 HOH A 112 1212 47 HOH HOH . H 7 HOH A 113 1213 68 HOH HOH . H 7 HOH A 114 1214 55 HOH HOH . H 7 HOH A 115 1215 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . E 5 20.22 -35.594 -11.874 1 49.52 ? N1 LDA 1004 A 1 HETATM 2 O O1 LDA . . . E 5 19.252 -34.871 -11.84 1 49.52 ? O1 LDA 1004 A 1 HETATM 3 C CM1 LDA . . . E 5 19.808 -36.898 -11.469 1 49.52 ? CM1 LDA 1004 A 1 HETATM 4 C CM2 LDA . . . E 5 21.269 -35.096 -11.04 1 49.52 ? CM2 LDA 1004 A 1 HETATM 5 C C1 LDA . . . E 5 20.643 -35.797 -13.22 1 49.52 ? C1 LDA 1004 A 1 HETATM 6 C C2 LDA . . . E 5 21.144 -34.612 -13.919 1 49.52 ? C2 LDA 1004 A 1 HETATM 7 C C3 LDA . . . E 5 21.479 -35.192 -15.264 1 49.52 ? C3 LDA 1004 A 1 HETATM 8 C C4 LDA . . . E 5 21.849 -34.114 -16.217 1 49.52 ? C4 LDA 1004 A 1 HETATM 9 C C5 LDA . . . E 5 23.036 -34.52 -17.03 1 49.52 ? C5 LDA 1004 A 1 HETATM 10 C C6 LDA . . . E 5 22.852 -34.074 -18.459 1 49.52 ? C6 LDA 1004 A 1 HETATM 11 C C7 LDA . . . E 5 24.188 -33.942 -19.137 1 49.52 ? C7 LDA 1004 A 1 HETATM 12 C C8 LDA . . . E 5 24.493 -32.499 -19.424 1 49.52 ? C8 LDA 1004 A 1 HETATM 13 C C9 LDA . . . E 5 24.154 -32.148 -20.856 1 49.52 ? C9 LDA 1004 A 1 HETATM 14 C C10 LDA . . . E 5 24.718 -30.787 -21.172 1 49.52 ? C10 LDA 1004 A 1 HETATM 15 C C11 LDA . . . E 5 24.059 -30.206 -22.403 1 49.52 ? C11 LDA 1004 A 1 HETATM 16 C C12 LDA . . . E 5 25.013 -29.324 -23.139 1 49.52 ? C12 LDA 1004 A 1 HETATM 17 H HM11 LDA . . . E 5 19.529 -36.873 -10.454 1 59.42 ? HM11 LDA 1004 A 1 HETATM 18 H HM12 LDA . . . E 5 19.007 -37.202 -12.086 1 59.42 ? HM12 LDA 1004 A 1 HETATM 19 H HM13 LDA . . . E 5 20.601 -37.583 -11.572 1 59.42 ? HM13 LDA 1004 A 1 HETATM 20 H HM21 LDA . . . E 5 21.267 -34.046 -11.077 1 59.42 ? HM21 LDA 1004 A 1 HETATM 21 H HM22 LDA . . . E 5 21.122 -35.423 -10.051 1 59.42 ? HM22 LDA 1004 A 1 HETATM 22 H HM23 LDA . . . E 5 22.198 -35.447 -11.384 1 59.42 ? HM23 LDA 1004 A 1 HETATM 23 H H11 LDA . . . E 5 21.441 -36.531 -13.232 1 59.42 ? H11 LDA 1004 A 1 HETATM 24 H H12 LDA . . . E 5 19.816 -36.204 -13.801 1 59.42 ? H12 LDA 1004 A 1 HETATM 25 H H21 LDA . . . E 5 22.026 -34.217 -13.427 1 59.42 ? H21 LDA 1004 A 1 HETATM 26 H H22 LDA . . . E 5 20.368 -33.856 -13.985 1 59.42 ? H22 LDA 1004 A 1 HETATM 27 H H31 LDA . . . E 5 20.621 -35.735 -15.653 1 59.42 ? H31 LDA 1004 A 1 HETATM 28 H H32 LDA . . . E 5 22.299 -35.895 -15.163 1 59.42 ? H32 LDA 1004 A 1 HETATM 29 H H41 LDA . . . E 5 21.009 -33.9 -16.876 1 59.42 ? H41 LDA 1004 A 1 HETATM 30 H H42 LDA . . . E 5 22.092 -33.206 -15.663 1 59.42 ? H42 LDA 1004 A 1 HETATM 31 H H51 LDA . . . E 5 23.936 -34.062 -16.621 1 59.42 ? H51 LDA 1004 A 1 HETATM 32 H H52 LDA . . . E 5 23.15 -35.603 -16.987 1 59.42 ? H52 LDA 1004 A 1 HETATM 33 H H61 LDA . . . E 5 22.336 -33.117 -18.477 1 59.42 ? H61 LDA 1004 A 1 HETATM 34 H H62 LDA . . . E 5 22.234 -34.802 -18.985 1 59.42 ? H62 LDA 1004 A 1 HETATM 35 H H71 LDA . . . E 5 24.966 -34.365 -18.504 1 59.42 ? H71 LDA 1004 A 1 HETATM 36 H H72 LDA . . . E 5 24.174 -34.494 -20.076 1 59.42 ? H72 LDA 1004 A 1 HETATM 37 H H81 LDA . . . E 5 25.549 -32.304 -19.245 1 59.42 ? H81 LDA 1004 A 1 HETATM 38 H H82 LDA . . . E 5 23.914 -31.871 -18.753 1 59.42 ? H82 LDA 1004 A 1 HETATM 39 H H91 LDA . . . E 5 24.577 -32.893 -21.529 1 59.42 ? H91 LDA 1004 A 1 HETATM 40 H H92 LDA . . . E 5 23.073 -32.142 -20.993 1 59.42 ? H92 LDA 1004 A 1 HETATM 41 H H101 LDA . . . E 5 25.794 -30.867 -21.322 1 59.42 ? H101 LDA 1004 A 1 HETATM 42 H H102 LDA . . . E 5 24.542 -30.124 -20.327 1 59.42 ? H102 LDA 1004 A 1 HETATM 43 H H111 LDA . . . E 5 23.729 -31.009 -23.06 1 59.42 ? H111 LDA 1004 A 1 HETATM 44 H H112 LDA . . . E 5 23.185 -29.63 -22.106 1 59.42 ? H112 LDA 1004 A 1 HETATM 45 H H121 LDA . . . E 5 25.248 -28.493 -22.534 1 59.42 ? H121 LDA 1004 A 1 HETATM 46 H H122 LDA . . . E 5 25.893 -29.865 -23.356 1 59.42 ? H122 LDA 1004 A 1 HETATM 47 H H123 LDA . . . E 5 24.571 -28.995 -24.042 1 59.42 ? H123 LDA 1004 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #