data_5TBO # _model_server_result.job_id eQN2xmnyJjcSdgBTylh-6w _model_server_result.datetime_utc '2024-10-12 15:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1006}' # _entry.id 5TBO # _exptl.entry_id 5TBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TBO _cell.length_a 86.38 _cell.length_b 86.38 _cell.length_c 138.608 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 221 n n C1 C2 GOL sing 222 n n C1 H11 GOL sing 223 n n C1 H12 GOL sing 224 n n O1 HO1 GOL sing 225 n n C2 O2 GOL sing 226 n n C2 C3 GOL sing 227 n n C2 H2 GOL sing 228 n n O2 HO2 GOL sing 229 n n C3 O3 GOL sing 230 n n C3 H31 GOL sing 231 n n C3 H32 GOL sing 232 n n O3 HO3 GOL sing 233 n n # _atom_sites.entry_id 5TBO _atom_sites.fract_transf_matrix[1][1] 0.011577 _atom_sites.fract_transf_matrix[1][2] 0.006684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78Z A 1 1001 1001 78Z D21 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 1004 LDA LDA . F 6 GOL A 1 1005 1005 GOL GOL . G 6 GOL A 1 1006 1006 GOL GOL . H 7 HOH A 1 1101 35 HOH HOH . H 7 HOH A 2 1102 120 HOH HOH . H 7 HOH A 3 1103 108 HOH HOH . H 7 HOH A 4 1104 3 HOH HOH . H 7 HOH A 5 1105 16 HOH HOH . H 7 HOH A 6 1106 10 HOH HOH . H 7 HOH A 7 1107 124 HOH HOH . H 7 HOH A 8 1108 86 HOH HOH . H 7 HOH A 9 1109 17 HOH HOH . H 7 HOH A 10 1110 99 HOH HOH . H 7 HOH A 11 1111 89 HOH HOH . H 7 HOH A 12 1112 97 HOH HOH . H 7 HOH A 13 1113 27 HOH HOH . H 7 HOH A 14 1114 49 HOH HOH . H 7 HOH A 15 1115 7 HOH HOH . H 7 HOH A 16 1116 22 HOH HOH . H 7 HOH A 17 1117 28 HOH HOH . H 7 HOH A 18 1118 102 HOH HOH . H 7 HOH A 19 1119 2 HOH HOH . H 7 HOH A 20 1120 61 HOH HOH . H 7 HOH A 21 1121 54 HOH HOH . H 7 HOH A 22 1122 101 HOH HOH . H 7 HOH A 23 1123 5 HOH HOH . H 7 HOH A 24 1124 62 HOH HOH . H 7 HOH A 25 1125 12 HOH HOH . H 7 HOH A 26 1126 38 HOH HOH . H 7 HOH A 27 1127 58 HOH HOH . H 7 HOH A 28 1128 74 HOH HOH . H 7 HOH A 29 1129 24 HOH HOH . H 7 HOH A 30 1130 32 HOH HOH . H 7 HOH A 31 1131 100 HOH HOH . H 7 HOH A 32 1132 60 HOH HOH . H 7 HOH A 33 1133 114 HOH HOH . H 7 HOH A 34 1134 34 HOH HOH . H 7 HOH A 35 1135 33 HOH HOH . H 7 HOH A 36 1136 110 HOH HOH . H 7 HOH A 37 1137 36 HOH HOH . H 7 HOH A 38 1138 1 HOH HOH . H 7 HOH A 39 1139 13 HOH HOH . H 7 HOH A 40 1140 79 HOH HOH . H 7 HOH A 41 1141 14 HOH HOH . H 7 HOH A 42 1142 40 HOH HOH . H 7 HOH A 43 1143 39 HOH HOH . H 7 HOH A 44 1144 45 HOH HOH . H 7 HOH A 45 1145 90 HOH HOH . H 7 HOH A 46 1146 4 HOH HOH . H 7 HOH A 47 1147 8 HOH HOH . H 7 HOH A 48 1148 6 HOH HOH . H 7 HOH A 49 1149 83 HOH HOH . H 7 HOH A 50 1150 75 HOH HOH . H 7 HOH A 51 1151 111 HOH HOH . H 7 HOH A 52 1152 118 HOH HOH . H 7 HOH A 53 1153 26 HOH HOH . H 7 HOH A 54 1154 56 HOH HOH . H 7 HOH A 55 1155 11 HOH HOH . H 7 HOH A 56 1156 20 HOH HOH . H 7 HOH A 57 1157 25 HOH HOH . H 7 HOH A 58 1158 30 HOH HOH . H 7 HOH A 59 1159 73 HOH HOH . H 7 HOH A 60 1160 41 HOH HOH . H 7 HOH A 61 1161 117 HOH HOH . H 7 HOH A 62 1162 18 HOH HOH . H 7 HOH A 63 1163 96 HOH HOH . H 7 HOH A 64 1164 81 HOH HOH . H 7 HOH A 65 1165 64 HOH HOH . H 7 HOH A 66 1166 78 HOH HOH . H 7 HOH A 67 1167 105 HOH HOH . H 7 HOH A 68 1168 15 HOH HOH . H 7 HOH A 69 1169 104 HOH HOH . H 7 HOH A 70 1170 113 HOH HOH . H 7 HOH A 71 1171 76 HOH HOH . H 7 HOH A 72 1172 93 HOH HOH . H 7 HOH A 73 1173 72 HOH HOH . H 7 HOH A 74 1174 82 HOH HOH . H 7 HOH A 75 1175 95 HOH HOH . H 7 HOH A 76 1176 98 HOH HOH . H 7 HOH A 77 1177 92 HOH HOH . H 7 HOH A 78 1178 9 HOH HOH . H 7 HOH A 79 1179 46 HOH HOH . H 7 HOH A 80 1180 91 HOH HOH . H 7 HOH A 81 1181 50 HOH HOH . H 7 HOH A 82 1182 109 HOH HOH . H 7 HOH A 83 1183 63 HOH HOH . H 7 HOH A 84 1184 23 HOH HOH . H 7 HOH A 85 1185 52 HOH HOH . H 7 HOH A 86 1186 66 HOH HOH . H 7 HOH A 87 1187 88 HOH HOH . H 7 HOH A 88 1188 85 HOH HOH . H 7 HOH A 89 1189 31 HOH HOH . H 7 HOH A 90 1190 59 HOH HOH . H 7 HOH A 91 1191 65 HOH HOH . H 7 HOH A 92 1192 119 HOH HOH . H 7 HOH A 93 1193 19 HOH HOH . H 7 HOH A 94 1194 29 HOH HOH . H 7 HOH A 95 1195 71 HOH HOH . H 7 HOH A 96 1196 42 HOH HOH . H 7 HOH A 97 1197 106 HOH HOH . H 7 HOH A 98 1198 94 HOH HOH . H 7 HOH A 99 1199 122 HOH HOH . H 7 HOH A 100 1200 48 HOH HOH . H 7 HOH A 101 1201 37 HOH HOH . H 7 HOH A 102 1202 126 HOH HOH . H 7 HOH A 103 1203 116 HOH HOH . H 7 HOH A 104 1204 44 HOH HOH . H 7 HOH A 105 1205 77 HOH HOH . H 7 HOH A 106 1206 53 HOH HOH . H 7 HOH A 107 1207 103 HOH HOH . H 7 HOH A 108 1208 51 HOH HOH . H 7 HOH A 109 1209 67 HOH HOH . H 7 HOH A 110 1210 70 HOH HOH . H 7 HOH A 111 1211 125 HOH HOH . H 7 HOH A 112 1212 47 HOH HOH . H 7 HOH A 113 1213 68 HOH HOH . H 7 HOH A 114 1214 55 HOH HOH . H 7 HOH A 115 1215 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 25.152 -36.356 -9.607 1 53.06 ? C1 GOL 1006 A 1 HETATM 2 O O1 GOL . . . G 6 25.182 -35.306 -10.517 1 45.19 ? O1 GOL 1006 A 1 HETATM 3 C C2 GOL . . . G 6 26.54 -36.951 -9.324 1 54.92 ? C2 GOL 1006 A 1 HETATM 4 O O2 GOL . . . G 6 27.559 -36.161 -9.892 1 55.27 ? O2 GOL 1006 A 1 HETATM 5 C C3 GOL . . . G 6 26.793 -37.171 -7.835 1 58.35 ? C3 GOL 1006 A 1 HETATM 6 O O3 GOL . . . G 6 27.632 -36.169 -7.231 1 56.9 ? O3 GOL 1006 A 1 HETATM 7 H H11 GOL . . . G 6 24.703 -36.015 -8.681 1 63.67 ? H11 GOL 1006 A 1 HETATM 8 H H12 GOL . . . G 6 24.5 -37.123 -10.011 1 63.67 ? H12 GOL 1006 A 1 HETATM 9 H H2 GOL . . . G 6 26.569 -37.936 -9.8 1 65.9 ? H2 GOL 1006 A 1 HETATM 10 H HO2 GOL . . . G 6 27.651 -35.349 -9.386 1 66.32 ? HO2 GOL 1006 A 1 HETATM 11 H H31 GOL . . . G 6 27.259 -38.146 -7.698 1 70.01 ? H31 GOL 1006 A 1 HETATM 12 H H32 GOL . . . G 6 25.84 -37.191 -7.31 1 70.01 ? H32 GOL 1006 A 1 HETATM 13 H HO3 GOL . . . G 6 27.678 -36.294 -6.276 1 68.27 ? HO3 GOL 1006 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #