data_5TBP # _model_server_result.job_id 7Id63rvNGd1WCGhwdat2sQ _model_server_result.datetime_utc '2025-01-25 08:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":502}' # _entry.id 5TBP # _exptl.entry_id 5TBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1Z)-5-fluoro-2-methyl-1-{[4-(propan-2-yl)phenyl]methylidene}-1H-inden-3-yl]acetic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.15 _cell.angle_gamma 90 _cell.entry_id 5TBP _cell.length_a 46.64 _cell.length_b 99.38 _cell.length_c 109.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 A,C,E,F,G,H,I,J,K,L,Q,U,W 2 1 B,D,M,N,O,P,R,S,T,V,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 M N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 269 1_555 C SG CYS 51 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 51 B CYS 269 1_555 D SG CYS 51 D CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C22 H21 F O2' _chem_comp.formula_weight 336.399 _chem_comp.id 7A4 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1Z)-5-fluoro-2-methyl-1-{[4-(propan-2-yl)phenyl]methylidene}-1H-inden-3-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 7A4 sing 1 n n C22 C03 7A4 sing 2 n n C22 C23 7A4 sing 3 n n C02 C03 7A4 doub 4 n n C02 C06 7A4 sing 5 n n C03 C04 7A4 sing 6 n n O25 C23 7A4 doub 7 n n C07 C06 7A4 doub 8 z n C07 C08 7A4 sing 9 n n C06 C05 7A4 sing 10 n n C23 O24 7A4 sing 11 n n C09 C08 7A4 doub 12 n y C09 C10 7A4 sing 13 n y C04 C05 7A4 doub 14 n y C04 C20 7A4 sing 15 n y C08 C13 7A4 sing 16 n y C05 C17 7A4 sing 17 n y C10 C11 7A4 doub 18 n y C20 C19 7A4 doub 19 n y C17 C18 7A4 doub 20 n y C13 C12 7A4 doub 21 n y C19 C18 7A4 sing 22 n y C19 F21 7A4 sing 23 n n C11 C12 7A4 sing 24 n y C11 C14 7A4 sing 25 n n C14 C16 7A4 sing 26 n n C14 C15 7A4 sing 27 n n C13 H1 7A4 sing 28 n n C16 H2 7A4 sing 29 n n C16 H3 7A4 sing 30 n n C16 H4 7A4 sing 31 n n C15 H5 7A4 sing 32 n n C15 H6 7A4 sing 33 n n C15 H7 7A4 sing 34 n n C14 H8 7A4 sing 35 n n C22 H9 7A4 sing 36 n n C22 H10 7A4 sing 37 n n C20 H11 7A4 sing 38 n n C01 H12 7A4 sing 39 n n C01 H13 7A4 sing 40 n n C01 H14 7A4 sing 41 n n C07 H15 7A4 sing 42 n n C09 H16 7A4 sing 43 n n C10 H17 7A4 sing 44 n n C12 H18 7A4 sing 45 n n C17 H19 7A4 sing 46 n n C18 H20 7A4 sing 47 n n O24 H21 7A4 sing 48 n n # _atom_sites.entry_id 5TBP _atom_sites.fract_transf_matrix[1][1] 0.021441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003453 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 7A4 A 1 501 501 7A4 7A4 . F 2 7A4 A 1 502 502 7A4 7A4 . G 2 7A4 A 1 503 503 7A4 7A4 . H 3 ACT A 1 504 504 ACT ACT . I 3 ACT A 1 505 505 ACT ACT . J 4 DMS A 1 506 506 DMS DMS . K 3 ACT A 1 507 507 ACT ACT . L 3 ACT A 1 508 508 ACT ACT . M 2 7A4 B 1 501 501 7A4 7A4 . N 5 GOL B 1 502 502 GOL GOL . O 3 ACT B 1 503 503 ACT ACT . P 3 ACT B 1 504 504 ACT ACT . Q 5 GOL C 1 501 501 GOL GOL . R 2 7A4 D 1 501 501 7A4 7A4 . S 2 7A4 D 1 502 502 7A4 7A4 . T 3 ACT D 1 503 503 ACT ACT . U 6 HOH A 1 601 601 HOH HOH . U 6 HOH A 2 602 602 HOH HOH . U 6 HOH A 3 603 603 HOH HOH . U 6 HOH A 4 604 604 HOH HOH . U 6 HOH A 5 605 605 HOH HOH . U 6 HOH A 6 606 606 HOH HOH . U 6 HOH A 7 607 607 HOH HOH . U 6 HOH A 8 608 608 HOH HOH . U 6 HOH A 9 609 609 HOH HOH . U 6 HOH A 10 610 610 HOH HOH . U 6 HOH A 11 611 611 HOH HOH . U 6 HOH A 12 612 612 HOH HOH . U 6 HOH A 13 613 613 HOH HOH . U 6 HOH A 14 614 614 HOH HOH . U 6 HOH A 15 615 615 HOH HOH . U 6 HOH A 16 616 616 HOH HOH . U 6 HOH A 17 617 617 HOH HOH . U 6 HOH A 18 618 618 HOH HOH . U 6 HOH A 19 619 619 HOH HOH . U 6 HOH A 20 620 620 HOH HOH . U 6 HOH A 21 621 621 HOH HOH . U 6 HOH A 22 622 622 HOH HOH . U 6 HOH A 23 623 623 HOH HOH . U 6 HOH A 24 624 624 HOH HOH . U 6 HOH A 25 625 625 HOH HOH . U 6 HOH A 26 626 626 HOH HOH . U 6 HOH A 27 627 627 HOH HOH . U 6 HOH A 28 628 628 HOH HOH . U 6 HOH A 29 629 629 HOH HOH . U 6 HOH A 30 630 630 HOH HOH . U 6 HOH A 31 631 631 HOH HOH . U 6 HOH A 32 632 632 HOH HOH . U 6 HOH A 33 633 633 HOH HOH . U 6 HOH A 34 634 634 HOH HOH . U 6 HOH A 35 635 635 HOH HOH . U 6 HOH A 36 636 636 HOH HOH . U 6 HOH A 37 637 637 HOH HOH . U 6 HOH A 38 638 638 HOH HOH . U 6 HOH A 39 639 639 HOH HOH . U 6 HOH A 40 640 640 HOH HOH . U 6 HOH A 41 641 641 HOH HOH . U 6 HOH A 42 642 642 HOH HOH . U 6 HOH A 43 643 643 HOH HOH . U 6 HOH A 44 644 644 HOH HOH . U 6 HOH A 45 645 645 HOH HOH . U 6 HOH A 46 646 646 HOH HOH . U 6 HOH A 47 647 647 HOH HOH . U 6 HOH A 48 648 648 HOH HOH . U 6 HOH A 49 649 649 HOH HOH . U 6 HOH A 50 650 650 HOH HOH . V 6 HOH B 1 601 601 HOH HOH . V 6 HOH B 2 602 602 HOH HOH . V 6 HOH B 3 603 603 HOH HOH . V 6 HOH B 4 604 604 HOH HOH . V 6 HOH B 5 605 605 HOH HOH . V 6 HOH B 6 606 606 HOH HOH . V 6 HOH B 7 607 607 HOH HOH . V 6 HOH B 8 608 608 HOH HOH . V 6 HOH B 9 609 609 HOH HOH . V 6 HOH B 10 610 610 HOH HOH . V 6 HOH B 11 611 611 HOH HOH . V 6 HOH B 12 612 612 HOH HOH . V 6 HOH B 13 613 613 HOH HOH . V 6 HOH B 14 614 614 HOH HOH . V 6 HOH B 15 615 615 HOH HOH . V 6 HOH B 16 616 616 HOH HOH . V 6 HOH B 17 617 617 HOH HOH . V 6 HOH B 18 618 618 HOH HOH . V 6 HOH B 19 619 619 HOH HOH . V 6 HOH B 20 620 620 HOH HOH . V 6 HOH B 21 621 621 HOH HOH . V 6 HOH B 22 622 622 HOH HOH . V 6 HOH B 23 623 623 HOH HOH . V 6 HOH B 24 624 624 HOH HOH . V 6 HOH B 25 625 625 HOH HOH . V 6 HOH B 26 626 626 HOH HOH . V 6 HOH B 27 627 627 HOH HOH . V 6 HOH B 28 628 628 HOH HOH . V 6 HOH B 29 629 629 HOH HOH . V 6 HOH B 30 630 630 HOH HOH . V 6 HOH B 31 631 631 HOH HOH . V 6 HOH B 32 632 632 HOH HOH . V 6 HOH B 33 633 633 HOH HOH . V 6 HOH B 34 634 634 HOH HOH . V 6 HOH B 35 635 635 HOH HOH . V 6 HOH B 36 636 636 HOH HOH . V 6 HOH B 37 637 637 HOH HOH . V 6 HOH B 38 638 638 HOH HOH . V 6 HOH B 39 639 639 HOH HOH . W 6 HOH C 1 601 601 HOH HOH . W 6 HOH C 2 602 602 HOH HOH . W 6 HOH C 3 603 603 HOH HOH . W 6 HOH C 4 604 604 HOH HOH . W 6 HOH C 5 605 605 HOH HOH . W 6 HOH C 6 606 606 HOH HOH . W 6 HOH C 7 607 607 HOH HOH . W 6 HOH C 8 608 608 HOH HOH . W 6 HOH C 9 609 609 HOH HOH . W 6 HOH C 10 610 610 HOH HOH . W 6 HOH C 11 611 611 HOH HOH . W 6 HOH C 12 612 612 HOH HOH . W 6 HOH C 13 613 613 HOH HOH . W 6 HOH C 14 614 614 HOH HOH . W 6 HOH C 15 615 615 HOH HOH . W 6 HOH C 16 616 616 HOH HOH . W 6 HOH C 17 617 617 HOH HOH . W 6 HOH C 18 618 618 HOH HOH . W 6 HOH C 19 619 619 HOH HOH . W 6 HOH C 20 620 620 HOH HOH . W 6 HOH C 21 621 621 HOH HOH . X 6 HOH D 1 601 601 HOH HOH . X 6 HOH D 2 602 602 HOH HOH . X 6 HOH D 3 603 603 HOH HOH . X 6 HOH D 4 604 604 HOH HOH . X 6 HOH D 5 605 605 HOH HOH . X 6 HOH D 6 606 606 HOH HOH . X 6 HOH D 7 607 607 HOH HOH . X 6 HOH D 8 608 608 HOH HOH . X 6 HOH D 9 609 609 HOH HOH . X 6 HOH D 10 610 610 HOH HOH . X 6 HOH D 11 611 611 HOH HOH . X 6 HOH D 12 612 612 HOH HOH . X 6 HOH D 13 613 613 HOH HOH . X 6 HOH D 14 614 614 HOH HOH . X 6 HOH D 15 615 615 HOH HOH . X 6 HOH D 16 616 616 HOH HOH . X 6 HOH D 17 617 617 HOH HOH . X 6 HOH D 18 618 618 HOH HOH . X 6 HOH D 19 619 619 HOH HOH . X 6 HOH D 20 620 620 HOH HOH . X 6 HOH D 21 621 621 HOH HOH . X 6 HOH D 22 622 622 HOH HOH . X 6 HOH D 23 623 623 HOH HOH . X 6 HOH D 24 624 624 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 7A4 . . . S 2 9.459 -25.726 33.054 0.94 119.92 ? C11 7A4 502 D 1 HETATM 2 C C13 7A4 . . . S 2 9.474 -26.472 30.767 0.94 107.28 ? C13 7A4 502 D 1 HETATM 3 C C16 7A4 . . . S 2 9.968 -24.032 34.829 0.94 103.56 ? C16 7A4 502 D 1 HETATM 4 C C15 7A4 . . . S 2 9.851 -26.451 35.42 0.94 113.66 ? C15 7A4 502 D 1 HETATM 5 C C14 7A4 . . . S 2 10.201 -25.448 34.344 0.94 121.92 ? C14 7A4 502 D 1 HETATM 6 C C19 7A4 . . . S 2 8.122 -31.728 29.071 0.94 82.49 ? C19 7A4 502 D 1 HETATM 7 C C22 7A4 . . . S 2 5.026 -29.415 26.075 0.94 82.67 ? C22 7A4 502 D 1 HETATM 8 C C23 7A4 . . . S 2 5.793 -30.098 24.964 0.94 83.11 ? C23 7A4 502 D 1 HETATM 9 C C20 7A4 . . . S 2 7.204 -31.23 28.139 0.94 85.87 ? C20 7A4 502 D 1 HETATM 10 C C01 7A4 . . . S 2 5.371 -26.355 27.169 0.94 92.9 ? C01 7A4 502 D 1 HETATM 11 C C02 7A4 . . . S 2 6.078 -27.573 27.707 0.94 92.88 ? C02 7A4 502 D 1 HETATM 12 C C03 7A4 . . . S 2 5.923 -28.959 27.199 0.94 88.36 ? C03 7A4 502 D 1 HETATM 13 C C04 7A4 . . . S 2 6.912 -29.881 28.117 0.94 83.64 ? C04 7A4 502 D 1 HETATM 14 C C05 7A4 . . . S 2 7.54 -28.97 29.045 0.94 87.61 ? C05 7A4 502 D 1 HETATM 15 C C06 7A4 . . . S 2 7.004 -27.636 28.743 0.94 92.23 ? C06 7A4 502 D 1 HETATM 16 C C07 7A4 . . . S 2 7.352 -26.498 29.389 0.94 96.73 ? C07 7A4 502 D 1 HETATM 17 C C08 7A4 . . . S 2 8.106 -26.248 30.683 0.94 104.26 ? C08 7A4 502 D 1 HETATM 18 C C09 7A4 . . . S 2 7.424 -25.741 31.778 0.94 108.25 ? C09 7A4 502 D 1 HETATM 19 C C10 7A4 . . . S 2 8.096 -25.485 32.964 0.94 114.42 ? C10 7A4 502 D 1 HETATM 20 C C12 7A4 . . . S 2 10.147 -26.222 31.956 0.94 113.61 ? C12 7A4 502 D 1 HETATM 21 C C17 7A4 . . . S 2 8.45 -29.476 29.964 0.94 87.75 ? C17 7A4 502 D 1 HETATM 22 C C18 7A4 . . . S 2 8.746 -30.846 29.986 0.94 83.49 ? C18 7A4 502 D 1 HETATM 23 O O24 7A4 . . . S 2 7.007 -29.823 24.78 0.94 87.82 ? O24 7A4 502 D 1 HETATM 24 O O25 7A4 . . . S 2 5.215 -30.937 24.223 0.94 77.79 ? O25 7A4 502 D 1 HETATM 25 F F21 7A4 . . . S 2 8.404 -33.038 29.088 0.94 79.97 ? F21 7A4 502 D 1 HETATM 26 H H1 7A4 . . . S 2 9.959 -26.822 29.997 0.94 128.74 ? H1 7A4 502 D 1 HETATM 27 H H2 7A4 . . . S 2 10.407 -23.907 35.697 0.94 124.27 ? H2 7A4 502 D 1 HETATM 28 H H3 7A4 . . . S 2 10.341 -23.399 34.18 0.94 124.27 ? H3 7A4 502 D 1 HETATM 29 H H4 7A4 . . . S 2 9.005 -23.874 34.923 0.94 124.27 ? H4 7A4 502 D 1 HETATM 30 H H5 7A4 . . . S 2 8.908 -26.348 35.669 0.94 136.39 ? H5 7A4 502 D 1 HETATM 31 H H6 7A4 . . . S 2 10.002 -27.357 35.083 0.94 136.39 ? H6 7A4 502 D 1 HETATM 32 H H7 7A4 . . . S 2 10.415 -26.296 36.207 0.94 136.39 ? H7 7A4 502 D 1 HETATM 33 H H8 7A4 . . . S 2 11.155 -25.537 34.158 0.94 146.3 ? H8 7A4 502 D 1 HETATM 34 H H9 7A4 . . . S 2 4.358 -30.036 26.431 0.94 99.2 ? H9 7A4 502 D 1 HETATM 35 H H10 7A4 . . . S 2 4.57 -28.634 25.702 0.94 99.2 ? H10 7A4 502 D 1 HETATM 36 H H11 7A4 . . . S 2 6.771 -31.836 27.507 0.94 103.04 ? H11 7A4 502 D 1 HETATM 37 H H12 7A4 . . . S 2 5.986 -25.843 26.602 0.94 111.48 ? H12 7A4 502 D 1 HETATM 38 H H13 7A4 . . . S 2 4.595 -26.634 26.641 0.94 111.48 ? H13 7A4 502 D 1 HETATM 39 H H14 7A4 . . . S 2 5.072 -25.794 27.916 0.94 111.48 ? H14 7A4 502 D 1 HETATM 40 H H15 7A4 . . . S 2 7.027 -25.685 28.96 0.94 116.08 ? H15 7A4 502 D 1 HETATM 41 H H16 7A4 . . . S 2 6.465 -25.572 31.718 0.94 129.9 ? H16 7A4 502 D 1 HETATM 42 H H17 7A4 . . . S 2 7.61 -25.138 33.737 0.94 137.3 ? H17 7A4 502 D 1 HETATM 43 H H18 7A4 . . . S 2 11.107 -26.389 32.017 0.94 136.33 ? H18 7A4 502 D 1 HETATM 44 H H19 7A4 . . . S 2 8.886 -28.874 30.599 0.94 105.3 ? H19 7A4 502 D 1 HETATM 45 H H20 7A4 . . . S 2 9.387 -31.195 30.635 0.94 100.19 ? H20 7A4 502 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #