data_5TBS # _model_server_result.job_id 5eRn1xkrkJE4KrI6-F0kDw _model_server_result.datetime_utc '2024-11-22 12:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5TBS # _exptl.entry_id 5TBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TBS _cell.length_a 100.827 _cell.length_b 100.827 _cell.length_c 100.827 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_656 -z+3/2,-x,y+3/2 0 0 -1 -1 0 0 0 1 0 151.2405 0 151.2405 3 'crystal symmetry operation' 10_536 -y,z-3/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 0 -151.2405 151.2405 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 99 n n S C1 DMS sing 100 n n S C2 DMS sing 101 n n C1 H11 DMS sing 102 n n C1 H12 DMS sing 103 n n C1 H13 DMS sing 104 n n C2 H21 DMS sing 105 n n C2 H22 DMS sing 106 n n C2 H23 DMS sing 107 n n # _atom_sites.entry_id 5TBS _atom_sites.fract_transf_matrix[1][1] 0.009918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE A 1 301 442 ADE ADE . C 3 DMS A 1 302 1 DMS DMS . D 3 DMS A 1 303 2 DMS DMS . E 3 DMS A 1 304 3 DMS DMS . F 4 HOH A 1 401 189 HOH HOH . F 4 HOH A 2 402 124 HOH HOH . F 4 HOH A 3 403 73 HOH HOH . F 4 HOH A 4 404 220 HOH HOH . F 4 HOH A 5 405 152 HOH HOH . F 4 HOH A 6 406 123 HOH HOH . F 4 HOH A 7 407 49 HOH HOH . F 4 HOH A 8 408 146 HOH HOH . F 4 HOH A 9 409 119 HOH HOH . F 4 HOH A 10 410 64 HOH HOH . F 4 HOH A 11 411 16 HOH HOH . F 4 HOH A 12 412 225 HOH HOH . F 4 HOH A 13 413 125 HOH HOH . F 4 HOH A 14 414 56 HOH HOH . F 4 HOH A 15 415 214 HOH HOH . F 4 HOH A 16 416 128 HOH HOH . F 4 HOH A 17 417 156 HOH HOH . F 4 HOH A 18 418 22 HOH HOH . F 4 HOH A 19 419 63 HOH HOH . F 4 HOH A 20 420 176 HOH HOH . F 4 HOH A 21 421 43 HOH HOH . F 4 HOH A 22 422 109 HOH HOH . F 4 HOH A 23 423 215 HOH HOH . F 4 HOH A 24 424 9 HOH HOH . F 4 HOH A 25 425 60 HOH HOH . F 4 HOH A 26 426 132 HOH HOH . F 4 HOH A 27 427 164 HOH HOH . F 4 HOH A 28 428 96 HOH HOH . F 4 HOH A 29 429 137 HOH HOH . F 4 HOH A 30 430 95 HOH HOH . F 4 HOH A 31 431 183 HOH HOH . F 4 HOH A 32 432 127 HOH HOH . F 4 HOH A 33 433 192 HOH HOH . F 4 HOH A 34 434 23 HOH HOH . F 4 HOH A 35 435 194 HOH HOH . F 4 HOH A 36 436 52 HOH HOH . F 4 HOH A 37 437 44 HOH HOH . F 4 HOH A 38 438 20 HOH HOH . F 4 HOH A 39 439 8 HOH HOH . F 4 HOH A 40 440 210 HOH HOH . F 4 HOH A 41 441 55 HOH HOH . F 4 HOH A 42 442 38 HOH HOH . F 4 HOH A 43 443 147 HOH HOH . F 4 HOH A 44 444 166 HOH HOH . F 4 HOH A 45 445 216 HOH HOH . F 4 HOH A 46 446 222 HOH HOH . F 4 HOH A 47 447 58 HOH HOH . F 4 HOH A 48 448 50 HOH HOH . F 4 HOH A 49 449 71 HOH HOH . F 4 HOH A 50 450 198 HOH HOH . F 4 HOH A 51 451 75 HOH HOH . F 4 HOH A 52 452 94 HOH HOH . F 4 HOH A 53 453 68 HOH HOH . F 4 HOH A 54 454 13 HOH HOH . F 4 HOH A 55 455 51 HOH HOH . F 4 HOH A 56 456 37 HOH HOH . F 4 HOH A 57 457 29 HOH HOH . F 4 HOH A 58 458 28 HOH HOH . F 4 HOH A 59 459 134 HOH HOH . F 4 HOH A 60 460 42 HOH HOH . F 4 HOH A 61 461 11 HOH HOH . F 4 HOH A 62 462 36 HOH HOH . F 4 HOH A 63 463 230 HOH HOH . F 4 HOH A 64 464 211 HOH HOH . F 4 HOH A 65 465 185 HOH HOH . F 4 HOH A 66 466 234 HOH HOH . F 4 HOH A 67 467 30 HOH HOH . F 4 HOH A 68 468 1 HOH HOH . F 4 HOH A 69 469 31 HOH HOH . F 4 HOH A 70 470 74 HOH HOH . F 4 HOH A 71 471 160 HOH HOH . F 4 HOH A 72 472 91 HOH HOH . F 4 HOH A 73 473 17 HOH HOH . F 4 HOH A 74 474 5 HOH HOH . F 4 HOH A 75 475 14 HOH HOH . F 4 HOH A 76 476 78 HOH HOH . F 4 HOH A 77 477 85 HOH HOH . F 4 HOH A 78 478 2 HOH HOH . F 4 HOH A 79 479 200 HOH HOH . F 4 HOH A 80 480 131 HOH HOH . F 4 HOH A 81 481 48 HOH HOH . F 4 HOH A 82 482 239 HOH HOH . F 4 HOH A 83 483 3 HOH HOH . F 4 HOH A 84 484 163 HOH HOH . F 4 HOH A 85 485 158 HOH HOH . F 4 HOH A 86 486 165 HOH HOH . F 4 HOH A 87 487 98 HOH HOH . F 4 HOH A 88 488 41 HOH HOH . F 4 HOH A 89 489 118 HOH HOH . F 4 HOH A 90 490 237 HOH HOH . F 4 HOH A 91 491 111 HOH HOH . F 4 HOH A 92 492 62 HOH HOH . F 4 HOH A 93 493 219 HOH HOH . F 4 HOH A 94 494 39 HOH HOH . F 4 HOH A 95 495 81 HOH HOH . F 4 HOH A 96 496 34 HOH HOH . F 4 HOH A 97 497 126 HOH HOH . F 4 HOH A 98 498 206 HOH HOH . F 4 HOH A 99 499 4 HOH HOH . F 4 HOH A 100 500 100 HOH HOH . F 4 HOH A 101 501 89 HOH HOH . F 4 HOH A 102 502 105 HOH HOH . F 4 HOH A 103 503 113 HOH HOH . F 4 HOH A 104 504 57 HOH HOH . F 4 HOH A 105 505 99 HOH HOH . F 4 HOH A 106 506 7 HOH HOH . F 4 HOH A 107 507 87 HOH HOH . F 4 HOH A 108 508 140 HOH HOH . F 4 HOH A 109 509 110 HOH HOH . F 4 HOH A 110 510 26 HOH HOH . F 4 HOH A 111 511 65 HOH HOH . F 4 HOH A 112 512 121 HOH HOH . F 4 HOH A 113 513 67 HOH HOH . F 4 HOH A 114 514 103 HOH HOH . F 4 HOH A 115 515 80 HOH HOH . F 4 HOH A 116 516 153 HOH HOH . F 4 HOH A 117 517 40 HOH HOH . F 4 HOH A 118 518 33 HOH HOH . F 4 HOH A 119 519 115 HOH HOH . F 4 HOH A 120 520 18 HOH HOH . F 4 HOH A 121 521 174 HOH HOH . F 4 HOH A 122 522 213 HOH HOH . F 4 HOH A 123 523 182 HOH HOH . F 4 HOH A 124 524 92 HOH HOH . F 4 HOH A 125 525 24 HOH HOH . F 4 HOH A 126 526 25 HOH HOH . F 4 HOH A 127 527 142 HOH HOH . F 4 HOH A 128 528 6 HOH HOH . F 4 HOH A 129 529 84 HOH HOH . F 4 HOH A 130 530 76 HOH HOH . F 4 HOH A 131 531 12 HOH HOH . F 4 HOH A 132 532 102 HOH HOH . F 4 HOH A 133 533 223 HOH HOH . F 4 HOH A 134 534 93 HOH HOH . F 4 HOH A 135 535 207 HOH HOH . F 4 HOH A 136 536 45 HOH HOH . F 4 HOH A 137 537 136 HOH HOH . F 4 HOH A 138 538 191 HOH HOH . F 4 HOH A 139 539 77 HOH HOH . F 4 HOH A 140 540 69 HOH HOH . F 4 HOH A 141 541 170 HOH HOH . F 4 HOH A 142 542 171 HOH HOH . F 4 HOH A 143 543 21 HOH HOH . F 4 HOH A 144 544 54 HOH HOH . F 4 HOH A 145 545 232 HOH HOH . F 4 HOH A 146 546 116 HOH HOH . F 4 HOH A 147 547 66 HOH HOH . F 4 HOH A 148 548 47 HOH HOH . F 4 HOH A 149 549 157 HOH HOH . F 4 HOH A 150 550 196 HOH HOH . F 4 HOH A 151 551 144 HOH HOH . F 4 HOH A 152 552 229 HOH HOH . F 4 HOH A 153 553 231 HOH HOH . F 4 HOH A 154 554 114 HOH HOH . F 4 HOH A 155 555 70 HOH HOH . F 4 HOH A 156 556 135 HOH HOH . F 4 HOH A 157 557 208 HOH HOH . F 4 HOH A 158 558 112 HOH HOH . F 4 HOH A 159 559 159 HOH HOH . F 4 HOH A 160 560 149 HOH HOH . F 4 HOH A 161 561 197 HOH HOH . F 4 HOH A 162 562 101 HOH HOH . F 4 HOH A 163 563 228 HOH HOH . F 4 HOH A 164 564 97 HOH HOH . F 4 HOH A 165 565 15 HOH HOH . F 4 HOH A 166 566 168 HOH HOH . F 4 HOH A 167 567 53 HOH HOH . F 4 HOH A 168 568 179 HOH HOH . F 4 HOH A 169 569 117 HOH HOH . F 4 HOH A 170 570 180 HOH HOH . F 4 HOH A 171 571 138 HOH HOH . F 4 HOH A 172 572 61 HOH HOH . F 4 HOH A 173 573 154 HOH HOH . F 4 HOH A 174 574 129 HOH HOH . F 4 HOH A 175 575 35 HOH HOH . F 4 HOH A 176 576 184 HOH HOH . F 4 HOH A 177 577 104 HOH HOH . F 4 HOH A 178 578 19 HOH HOH . F 4 HOH A 179 579 190 HOH HOH . F 4 HOH A 180 580 209 HOH HOH . F 4 HOH A 181 581 169 HOH HOH . F 4 HOH A 182 582 226 HOH HOH . F 4 HOH A 183 583 217 HOH HOH . F 4 HOH A 184 584 233 HOH HOH . F 4 HOH A 185 585 59 HOH HOH . F 4 HOH A 186 586 218 HOH HOH . F 4 HOH A 187 587 86 HOH HOH . F 4 HOH A 188 588 82 HOH HOH . F 4 HOH A 189 589 172 HOH HOH . F 4 HOH A 190 590 27 HOH HOH . F 4 HOH A 191 591 204 HOH HOH . F 4 HOH A 192 592 212 HOH HOH . F 4 HOH A 193 593 193 HOH HOH . F 4 HOH A 194 594 224 HOH HOH . F 4 HOH A 195 595 177 HOH HOH . F 4 HOH A 196 596 90 HOH HOH . F 4 HOH A 197 597 186 HOH HOH . F 4 HOH A 198 598 106 HOH HOH . F 4 HOH A 199 599 202 HOH HOH . F 4 HOH A 200 600 161 HOH HOH . F 4 HOH A 201 601 145 HOH HOH . F 4 HOH A 202 602 188 HOH HOH . F 4 HOH A 203 603 199 HOH HOH . F 4 HOH A 204 604 141 HOH HOH . F 4 HOH A 205 605 108 HOH HOH . F 4 HOH A 206 606 227 HOH HOH . F 4 HOH A 207 607 122 HOH HOH . F 4 HOH A 208 608 139 HOH HOH . F 4 HOH A 209 609 175 HOH HOH . F 4 HOH A 210 610 88 HOH HOH . F 4 HOH A 211 611 187 HOH HOH . F 4 HOH A 212 612 195 HOH HOH . F 4 HOH A 213 613 148 HOH HOH . F 4 HOH A 214 614 72 HOH HOH . F 4 HOH A 215 615 143 HOH HOH . F 4 HOH A 216 616 155 HOH HOH . F 4 HOH A 217 617 181 HOH HOH . F 4 HOH A 218 618 173 HOH HOH . F 4 HOH A 219 619 151 HOH HOH . F 4 HOH A 220 620 162 HOH HOH . F 4 HOH A 221 621 130 HOH HOH . F 4 HOH A 222 622 167 HOH HOH . F 4 HOH A 223 623 83 HOH HOH . F 4 HOH A 224 624 205 HOH HOH . F 4 HOH A 225 625 46 HOH HOH . F 4 HOH A 226 626 221 HOH HOH . F 4 HOH A 227 627 133 HOH HOH . F 4 HOH A 228 628 150 HOH HOH . F 4 HOH A 229 629 236 HOH HOH . F 4 HOH A 230 630 203 HOH HOH . F 4 HOH A 231 631 79 HOH HOH . F 4 HOH A 232 632 201 HOH HOH . F 4 HOH A 233 633 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 93.657 -98.165 83.255 1 36.59 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 93.559 -97.685 84.698 1 52.11 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 94.944 -99.432 83.145 1 29.34 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 92.148 -99.016 82.988 1 22.86 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #