data_5TBU # _model_server_result.job_id QCs3v0gfEWejwXA1p2-eTg _model_server_result.datetime_utc '2024-11-08 10:39:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5TBU # _exptl.entry_id 5TBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TBU _cell.length_a 99.708 _cell.length_b 99.708 _cell.length_c 99.708 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -49.854 -49.854 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 49.854 -49.854 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 161 n y N1 C6 HPA sing 162 n y N1 HN1 HPA sing 163 n n C2 N3 HPA doub 164 n y C2 H2 HPA sing 165 n n N3 C4 HPA sing 166 n y C4 C5 HPA doub 167 n y C4 N9 HPA sing 168 n y C5 C6 HPA sing 169 n y C5 N7 HPA sing 170 n y C6 O6 HPA doub 171 n n N7 C8 HPA sing 172 n y N7 HN7 HPA sing 173 n n C8 N9 HPA doub 174 n y C8 H8 HPA sing 175 n n # _atom_sites.entry_id 5TBU _atom_sites.fract_transf_matrix[1][1] 0.010029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HPA A 1 301 4274 HPA HPA . C 3 DMS A 1 302 1 DMS DMS . D 3 DMS A 1 303 2 DMS DMS . E 3 DMS A 1 304 3 DMS DMS . F 4 HOH A 1 401 144 HOH HOH . F 4 HOH A 2 402 24 HOH HOH . F 4 HOH A 3 403 71 HOH HOH . F 4 HOH A 4 404 70 HOH HOH . F 4 HOH A 5 405 167 HOH HOH . F 4 HOH A 6 406 58 HOH HOH . F 4 HOH A 7 407 100 HOH HOH . F 4 HOH A 8 408 201 HOH HOH . F 4 HOH A 9 409 193 HOH HOH . F 4 HOH A 10 410 37 HOH HOH . F 4 HOH A 11 411 56 HOH HOH . F 4 HOH A 12 412 1 HOH HOH . F 4 HOH A 13 413 91 HOH HOH . F 4 HOH A 14 414 197 HOH HOH . F 4 HOH A 15 415 32 HOH HOH . F 4 HOH A 16 416 93 HOH HOH . F 4 HOH A 17 417 204 HOH HOH . F 4 HOH A 18 418 118 HOH HOH . F 4 HOH A 19 419 139 HOH HOH . F 4 HOH A 20 420 43 HOH HOH . F 4 HOH A 21 421 117 HOH HOH . F 4 HOH A 22 422 160 HOH HOH . F 4 HOH A 23 423 8 HOH HOH . F 4 HOH A 24 424 39 HOH HOH . F 4 HOH A 25 425 13 HOH HOH . F 4 HOH A 26 426 20 HOH HOH . F 4 HOH A 27 427 16 HOH HOH . F 4 HOH A 28 428 196 HOH HOH . F 4 HOH A 29 429 38 HOH HOH . F 4 HOH A 30 430 106 HOH HOH . F 4 HOH A 31 431 31 HOH HOH . F 4 HOH A 32 432 200 HOH HOH . F 4 HOH A 33 433 194 HOH HOH . F 4 HOH A 34 434 113 HOH HOH . F 4 HOH A 35 435 124 HOH HOH . F 4 HOH A 36 436 132 HOH HOH . F 4 HOH A 37 437 97 HOH HOH . F 4 HOH A 38 438 142 HOH HOH . F 4 HOH A 39 439 131 HOH HOH . F 4 HOH A 40 440 59 HOH HOH . F 4 HOH A 41 441 17 HOH HOH . F 4 HOH A 42 442 77 HOH HOH . F 4 HOH A 43 443 5 HOH HOH . F 4 HOH A 44 444 57 HOH HOH . F 4 HOH A 45 445 7 HOH HOH . F 4 HOH A 46 446 3 HOH HOH . F 4 HOH A 47 447 87 HOH HOH . F 4 HOH A 48 448 150 HOH HOH . F 4 HOH A 49 449 30 HOH HOH . F 4 HOH A 50 450 62 HOH HOH . F 4 HOH A 51 451 202 HOH HOH . F 4 HOH A 52 452 50 HOH HOH . F 4 HOH A 53 453 98 HOH HOH . F 4 HOH A 54 454 75 HOH HOH . F 4 HOH A 55 455 72 HOH HOH . F 4 HOH A 56 456 112 HOH HOH . F 4 HOH A 57 457 14 HOH HOH . F 4 HOH A 58 458 25 HOH HOH . F 4 HOH A 59 459 125 HOH HOH . F 4 HOH A 60 460 47 HOH HOH . F 4 HOH A 61 461 162 HOH HOH . F 4 HOH A 62 462 15 HOH HOH . F 4 HOH A 63 463 79 HOH HOH . F 4 HOH A 64 464 27 HOH HOH . F 4 HOH A 65 465 95 HOH HOH . F 4 HOH A 66 466 11 HOH HOH . F 4 HOH A 67 467 12 HOH HOH . F 4 HOH A 68 468 161 HOH HOH . F 4 HOH A 69 469 51 HOH HOH . F 4 HOH A 70 470 34 HOH HOH . F 4 HOH A 71 471 156 HOH HOH . F 4 HOH A 72 472 88 HOH HOH . F 4 HOH A 73 473 129 HOH HOH . F 4 HOH A 74 474 78 HOH HOH . F 4 HOH A 75 475 182 HOH HOH . F 4 HOH A 76 476 4 HOH HOH . F 4 HOH A 77 477 183 HOH HOH . F 4 HOH A 78 478 6 HOH HOH . F 4 HOH A 79 479 9 HOH HOH . F 4 HOH A 80 480 18 HOH HOH . F 4 HOH A 81 481 23 HOH HOH . F 4 HOH A 82 482 154 HOH HOH . F 4 HOH A 83 483 190 HOH HOH . F 4 HOH A 84 484 173 HOH HOH . F 4 HOH A 85 485 92 HOH HOH . F 4 HOH A 86 486 146 HOH HOH . F 4 HOH A 87 487 76 HOH HOH . F 4 HOH A 88 488 22 HOH HOH . F 4 HOH A 89 489 48 HOH HOH . F 4 HOH A 90 490 60 HOH HOH . F 4 HOH A 91 491 28 HOH HOH . F 4 HOH A 92 492 81 HOH HOH . F 4 HOH A 93 493 157 HOH HOH . F 4 HOH A 94 494 46 HOH HOH . F 4 HOH A 95 495 2 HOH HOH . F 4 HOH A 96 496 109 HOH HOH . F 4 HOH A 97 497 191 HOH HOH . F 4 HOH A 98 498 73 HOH HOH . F 4 HOH A 99 499 42 HOH HOH . F 4 HOH A 100 500 164 HOH HOH . F 4 HOH A 101 501 115 HOH HOH . F 4 HOH A 102 502 133 HOH HOH . F 4 HOH A 103 503 89 HOH HOH . F 4 HOH A 104 504 66 HOH HOH . F 4 HOH A 105 505 148 HOH HOH . F 4 HOH A 106 506 67 HOH HOH . F 4 HOH A 107 507 65 HOH HOH . F 4 HOH A 108 508 152 HOH HOH . F 4 HOH A 109 509 184 HOH HOH . F 4 HOH A 110 510 136 HOH HOH . F 4 HOH A 111 511 61 HOH HOH . F 4 HOH A 112 512 155 HOH HOH . F 4 HOH A 113 513 10 HOH HOH . F 4 HOH A 114 514 94 HOH HOH . F 4 HOH A 115 515 127 HOH HOH . F 4 HOH A 116 516 134 HOH HOH . F 4 HOH A 117 517 216 HOH HOH . F 4 HOH A 118 518 21 HOH HOH . F 4 HOH A 119 519 99 HOH HOH . F 4 HOH A 120 520 189 HOH HOH . F 4 HOH A 121 521 140 HOH HOH . F 4 HOH A 122 522 55 HOH HOH . F 4 HOH A 123 523 186 HOH HOH . F 4 HOH A 124 524 107 HOH HOH . F 4 HOH A 125 525 143 HOH HOH . F 4 HOH A 126 526 29 HOH HOH . F 4 HOH A 127 527 180 HOH HOH . F 4 HOH A 128 528 138 HOH HOH . F 4 HOH A 129 529 114 HOH HOH . F 4 HOH A 130 530 80 HOH HOH . F 4 HOH A 131 531 101 HOH HOH . F 4 HOH A 132 532 19 HOH HOH . F 4 HOH A 133 533 153 HOH HOH . F 4 HOH A 134 534 69 HOH HOH . F 4 HOH A 135 535 41 HOH HOH . F 4 HOH A 136 536 85 HOH HOH . F 4 HOH A 137 537 40 HOH HOH . F 4 HOH A 138 538 126 HOH HOH . F 4 HOH A 139 539 123 HOH HOH . F 4 HOH A 140 540 53 HOH HOH . F 4 HOH A 141 541 116 HOH HOH . F 4 HOH A 142 542 35 HOH HOH . F 4 HOH A 143 543 176 HOH HOH . F 4 HOH A 144 544 26 HOH HOH . F 4 HOH A 145 545 54 HOH HOH . F 4 HOH A 146 546 214 HOH HOH . F 4 HOH A 147 547 82 HOH HOH . F 4 HOH A 148 548 63 HOH HOH . F 4 HOH A 149 549 215 HOH HOH . F 4 HOH A 150 550 172 HOH HOH . F 4 HOH A 151 551 166 HOH HOH . F 4 HOH A 152 552 36 HOH HOH . F 4 HOH A 153 553 145 HOH HOH . F 4 HOH A 154 554 221 HOH HOH . F 4 HOH A 155 555 128 HOH HOH . F 4 HOH A 156 556 208 HOH HOH . F 4 HOH A 157 557 158 HOH HOH . F 4 HOH A 158 558 169 HOH HOH . F 4 HOH A 159 559 210 HOH HOH . F 4 HOH A 160 560 199 HOH HOH . F 4 HOH A 161 561 122 HOH HOH . F 4 HOH A 162 562 111 HOH HOH . F 4 HOH A 163 563 185 HOH HOH . F 4 HOH A 164 564 149 HOH HOH . F 4 HOH A 165 565 120 HOH HOH . F 4 HOH A 166 566 220 HOH HOH . F 4 HOH A 167 567 121 HOH HOH . F 4 HOH A 168 568 225 HOH HOH . F 4 HOH A 169 569 33 HOH HOH . F 4 HOH A 170 570 168 HOH HOH . F 4 HOH A 171 571 211 HOH HOH . F 4 HOH A 172 572 104 HOH HOH . F 4 HOH A 173 573 163 HOH HOH . F 4 HOH A 174 574 49 HOH HOH . F 4 HOH A 175 575 90 HOH HOH . F 4 HOH A 176 576 177 HOH HOH . F 4 HOH A 177 577 151 HOH HOH . F 4 HOH A 178 578 159 HOH HOH . F 4 HOH A 179 579 45 HOH HOH . F 4 HOH A 180 580 84 HOH HOH . F 4 HOH A 181 581 74 HOH HOH . F 4 HOH A 182 582 110 HOH HOH . F 4 HOH A 183 583 119 HOH HOH . F 4 HOH A 184 584 130 HOH HOH . F 4 HOH A 185 585 103 HOH HOH . F 4 HOH A 186 586 83 HOH HOH . F 4 HOH A 187 587 44 HOH HOH . F 4 HOH A 188 588 170 HOH HOH . F 4 HOH A 189 589 203 HOH HOH . F 4 HOH A 190 590 137 HOH HOH . F 4 HOH A 191 591 174 HOH HOH . F 4 HOH A 192 592 68 HOH HOH . F 4 HOH A 193 593 171 HOH HOH . F 4 HOH A 194 594 205 HOH HOH . F 4 HOH A 195 595 165 HOH HOH . F 4 HOH A 196 596 192 HOH HOH . F 4 HOH A 197 597 188 HOH HOH . F 4 HOH A 198 598 219 HOH HOH . F 4 HOH A 199 599 108 HOH HOH . F 4 HOH A 200 600 96 HOH HOH . F 4 HOH A 201 601 209 HOH HOH . F 4 HOH A 202 602 223 HOH HOH . F 4 HOH A 203 603 217 HOH HOH . F 4 HOH A 204 604 178 HOH HOH . F 4 HOH A 205 605 222 HOH HOH . F 4 HOH A 206 606 102 HOH HOH . F 4 HOH A 207 607 213 HOH HOH . F 4 HOH A 208 608 207 HOH HOH . F 4 HOH A 209 609 175 HOH HOH . F 4 HOH A 210 610 64 HOH HOH . F 4 HOH A 211 611 105 HOH HOH . F 4 HOH A 212 612 181 HOH HOH . F 4 HOH A 213 613 187 HOH HOH . F 4 HOH A 214 614 86 HOH HOH . F 4 HOH A 215 615 195 HOH HOH . F 4 HOH A 216 616 179 HOH HOH . F 4 HOH A 217 617 141 HOH HOH . F 4 HOH A 218 618 198 HOH HOH . F 4 HOH A 219 619 147 HOH HOH . F 4 HOH A 220 620 52 HOH HOH . F 4 HOH A 221 621 226 HOH HOH . F 4 HOH A 222 622 212 HOH HOH . F 4 HOH A 223 623 135 HOH HOH . F 4 HOH A 224 624 206 HOH HOH . F 4 HOH A 225 625 224 HOH HOH . F 4 HOH A 226 626 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . B 2 -5.018 -27.449 -4.063 1 17.17 ? N1 HPA 301 A 1 HETATM 2 C C2 HPA . . . B 2 -4.199 -26.365 -3.819 1 17.17 ? C2 HPA 301 A 1 HETATM 3 N N3 HPA . . . B 2 -2.839 -26.454 -4.037 1 14.37 ? N3 HPA 301 A 1 HETATM 4 C C4 HPA . . . B 2 -2.296 -27.61 -4.493 1 15.47 ? C4 HPA 301 A 1 HETATM 5 C C5 HPA . . . B 2 -3.105 -28.711 -4.743 1 17.05 ? C5 HPA 301 A 1 HETATM 6 C C6 HPA . . . B 2 -4.474 -28.628 -4.526 1 16.94 ? C6 HPA 301 A 1 HETATM 7 O O6 HPA . . . B 2 -5.19 -29.618 -4.669 1 17.2 ? O6 HPA 301 A 1 HETATM 8 N N7 HPA . . . B 2 -2.308 -29.709 -5.181 1 17.79 ? N7 HPA 301 A 1 HETATM 9 C C8 HPA . . . B 2 -1.037 -29.248 -5.206 1 16.6 ? C8 HPA 301 A 1 HETATM 10 N N9 HPA . . . B 2 -1.028 -27.964 -4.784 1 13.68 ? N9 HPA 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #